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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065694 ID=TCONS_00065694|Name=TCONS_00065694|organism=Clytia hemisphaerica|type=transcript|length=1188bp
NCACCTTTCAACTTCTCTTCAACAACAAATCATTGGAGAACGAGAAACAA
TCGTGCAATGGATATGGTGTCAATAATATTTCAaaAACCAACAACTCTTT
GTTGAAAACATTAGATTTCATTGATTCCAACATCAACGAATATCCATCAG
TGAAATCAGAAACCTACACTCTGGATGATCTACTAGATCTGGAAAATGAA
GAGCTGGCACAAGTCCCTTATTACTATGACAACGCATCTTTTGATGACGA
ATCATTATTTGTACCATCAACTGAGATTCTAATGGATACTGCCTTAGCTT
CGCCTTTGTCATCAAGCAGCGATGAATCTTGCGATTTAAATGATCTCTTA
TTTATGTGCGATCAAGCTGCAGAAACCCGGACCCAAGAGCAGCCAGCTTC
TGTTCAGGAAGTTACCGACCACCAATACGCTCTTTTGGAAGATGCTCCAA
AAGCAGACCAGGAAATCTCATTAGAGGATATGCTTGCTGGTAATACAACA
GATTTAAGTGCACTTTGTTCGCTTTTGTTTCAAGCAAAAGGAATTGAAGC
ACCTGAATTTTCTGCACTTGAAGAACAACCGACGACTGTTCTCGAAGAAC
CAACAGTCAGTGCTCCATTGTCTCCAGCTTCTTCAGTTACGTCTTCAGAA
TCCGAATCTGAATCACGTCCAGCCCGTTACAAGCCATACAGAAAGCAAAA
GACCCCCGAACAGAAATTACGTAAGAAAGCTCAGAACCGTACCGCAGCTA
CTCGATACCGAGTCAAGAAGAAGGATGAGTTAAAAATTATGACGGATGAA
GCAGACAAACTGGAAGAAACCAACAAGGATTTGAAAGGGAAAGTTGATGG
ATTACGTAATGAGATAGATTATTTGAAGAATTTGATGTTGGATGTAATTA
AAGCTCGATTAGCGAAAGGAGCAACCCCTGATGCTCTTCTCTCTGCAGCA
GCTTTAatgttaaaatgaaaatgaagttttcaaTTAAAGAGACAATGTTG
tcattttatgaaatatttttttgaaccaTAGACATTGTGAtttgtttctt
agtttttgtaTATAGTTTGTTTGTTGAATAATGGGTTATCTTGCTCCTTC
ACATTTAAAAACTCCGTCTCAGAATTTCCTATCCTATCCTAAGACAAAta
aagacaaatcactatctcagaaataagcccaaagccga Run BLAST on NCBI transcript from alignment at scaffold_443:177629..179882+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065694 ID=TCONS_00065694|Name=TCONS_00065694|organism=Clytia hemisphaerica|type=transcript|length=2254bp|location=Sequence derived from alignment at scaffold_443:177629..179882+ (Clytia hemisphaerica)
NCACCTTTCAACTTCTCTTCAACAACAAATCATTGGAGAACGAGAAACAA
TCGTGCAATGGATATGGTGTCAATAATATTTCAagtaaatatctttgttt
caattttatttagtcCACCTTATTATCTTTAATGAGCAACCCTAACTTTA
TTCCTAGCCAAGGTTGCTTAGTATATATCAGTAAATGTGAGAAATTGGCT
ATGATCATTCCTGACGTTATATTATTTTATGTCTATAGGGTCAAAGGGCT
TTAACTTTGTCATAGTTAGATAAATCTTCTAAAAGTTTTCTTTATGGAAT
AATAAAAAAGGATCTTGCTGGCAGGGCTCAAGCCTATATTAAAATTAAGA
TGAATTCAGAtgaattcacaaaaaaattctacATAAGCAGCTGTTTTAAA
ATTAATGTATACTCTATTATAGGTGCTCTACTATCCTTTAAGAGATAAGC
GATGAAACTGCATCAGTCCTCTGATTCAAAAGTCACTAAGATATAGACAT
CGAAAGAGAATTTTGTGATCATTTATTTTGCATTGAAGATGACAAACAGA
AATTAAGATAAATTTTGTAATAATtaagtgaaagtttgaagaagaGCACA
TGACTGACTTCCTTCGacttttgattggttgattttctCTGATTAAGGAA
AAGGAAGTTACTGGTTTTGTAGTAATTATAGAAATTGTTGTCCTAACAGT
TTTCGATAAGAAGAGCTAtccattttaatttctttatatCTCGTTATATA
AACTTCCTTTGGTAATTTAGAATCCTGTGattcaaaaaatagaaataagc
tAATTAAAGATTTGGACCTTGTTTTGTTATAACCCATAACCATCAATCAA
TCTGTAAAATCGTTATTGACAAATAGATTGCAGTTATTGCCCTGCTATCT
TTCTAGCTTATTAACCATGTAACAATTATCTCCCTGGCTGGCTATTCAAA
TATATCTAGAATTCTTTGAATAAGaaaatcctttcaattaaaggAAAGAG
GCTCATCTGTTAGAATGGCAGAATAGTTTGGATATAAAATAAGTTACACT
AAAGGTACACTGTTGCCTCATATCGCTCTTTCTTGCCAACTTGATAATCT
GTTGCACCCAATTATTACTTAACAGTgctctctttctttcttttcttcag
aAACCAACAACTCTTTGTTGAAAACATTAGATTTCATTGATTCCAACATC
AACGAATATCCATCAGTGAAATCAGAAACCTACACTCTGGATGATCTACT
AGATCTGGAAAATGAAGAGCTGGCACAAGTCCCTTATTACTATGACAACG
CATCTTTTGATGACGAATCATTATTTGTACCATCAACTGAGATTCTAATG
GATACTGCCTTAGCTTCGCCTTTGTCATCAAGCAGCGATGAATCTTGCGA
TTTAAATGATCTCTTATTTATGTGCGATCAAGCTGCAGAAACCCGGACCC
AAGAGCAGCCAGCTTCTGTTCAGGAAGTTACCGACCACCAATACGCTCTT
TTGGAAGATGCTCCAAAAGCAGACCAGGAAATCTCATTAGAGGATATGCT
TGCTGGTAATACAACAGATTTAAGTGCACTTTGTTCGCTTTTGTTTCAAG
CAAAAGGAATTGAAGCACCTGAATTTTCTGCACTTGAAGAACAACCGACG
ACTGTTCTCGAAGAACCAACAGTCAGTGCTCCATTGTCTCCAGCTTCTTC
AGTTACGTCTTCAGAATCCGAATCTGAATCACGTCCAGCCCGTTACAAGC
CATACAGAAAGCAAAAGACCCCCGAACAGAAATTACGTAAGAAAGCTCAG
AACCGTACCGCAGCTACTCGATACCGAGTCAAGAAGAAGGATGAGTTAAA
AATTATGACGGATGAAGCAGACAAACTGGAAGAAACCAACAAGGATTTGA
AAGGGAAAGTTGATGGATTACGTAATGAGATAGATTATTTGAAGAATTTG
ATGTTGGATGTAATTAAAGCTCGATTAGCGAAAGGAGCAACCCCTGATGC
TCTTCTCTCTGCAGCAGCTTTAatgttaaaatgaaaatgaagttttcaaT
TAAAGAGACAATGTTGtcattttatgaaatatttttttgaaccaTAGACA
TTGTGAtttgtttcttagtttttgtaTATAGTTTGTTTGTTGAATAATGG
GTTATCTTGCTCCTTCACATTTAAAAACTCCGTCTCAGAATTTCCTATCC
TATCCTAAGACAAAtaaagacaaatcactatctcagaaataagcccaaag
ccga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065694-exon-scaffold_443-1491911889:177629..177712 | TCONS_00065694-exon-scaffold_443-1491911889:177629..177712 | Clytia hemisphaerica | exon |
| TCONS_00065694-exon-scaffold_443-1510915933:177629..177712 | TCONS_00065694-exon-scaffold_443-1510915933:177629..177712 | Clytia hemisphaerica | exon |
| TCONS_00065694-exon-scaffold_443-1575043694:177629..177712 | TCONS_00065694-exon-scaffold_443-1575043694:177629..177712 | Clytia hemisphaerica | exon |
| TCONS_00065694-exon-scaffold_443-1491911889:178779..179882 | TCONS_00065694-exon-scaffold_443-1491911889:178779..179882 | Clytia hemisphaerica | exon |
| TCONS_00065694-exon-scaffold_443-1510915933:178779..179882 | TCONS_00065694-exon-scaffold_443-1510915933:178779..179882 | Clytia hemisphaerica | exon |
| TCONS_00065694-exon-scaffold_443-1575043694:178779..179882 | TCONS_00065694-exon-scaffold_443-1575043694:178779..179882 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_443 | supercontig | scaffold_443:177629..179882 + |
Blast
The following BLAST results are available for this feature:
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