TCONS_00065696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065696
Unique NameTCONS_00065696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1650

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065696 ID=TCONS_00065696|Name=TCONS_00065696|organism=Clytia hemisphaerica|type=transcript|length=1650bp
CCTGGTGAATATATTCCTACTGTATTTGATAATTACTCAGCCAATGTTAT
GGTAGATGGTAAACCAATCAATCTTGGATTGTGGGATACAGCAGGTCAAG
AAGATTACGACAGATTGAGACCCCTTTCATACCCACAAACAGATGTATTC
TTGATCTGCTTCTCACTGACCAGTCCTGCATCTTTTGAAAACGTCCGTGC
AAAATGGTTTCCAGAAGTTAATCATCACTGTCCTAACGCACCAGTCGTTC
TTGTTGGTACAAAGCTTGATTTACGAGAGGATAAAGaaacaattgaaaaa
ttaaaggaaAAGAAATTAGTGCCTATTACTGCTACTACCGCTTTACAAAT
GTCAAAAGAAATCGGAGCTGTCAAATACCTAGAGTGCTCTGCTCTCACAC
AAAAAGGACTTAAACAAGTTTTCGATGAAGCTATTCGTGCTGTACTTTGT
CCTAAGAAACCAACTAAAGCAAAGAAAGGATGTACGCTGTTATAGAATCG
GTTTCAAAGAAGCACAACATACCCTTCGCACTGTTATTATATGTTGACCC
CAAAGTAAATTAATATACATCGCAATCGACTCCGAAAGCTGGCCATAGTT
TTGCTGGGTTTAACTGGATCAATCTACACTAAGCCAACAAAGTGATTTAC
ACCTGACGTGATTTTATCGGTATACAAATTTAATGaagatacacattttt
tatactGATGTACgtaaaaaaactgaaactttATGGTTTTCAGtatttga
tattgttgtgaCAAGGACTGTCTCAAAAAAGAGTGATAAAATTATTGGAA
ATTGAAACAAAAGATTCAAAgacaaattttcctttttcatcttcaagtgt
acattttgcaattttcttcatattttgttacatttttgtccatgtttttt
tttgccttttattttttttggggggCGCGAATCTATCTTTCAATACATCT
TAATTTTGACGATTTCTTGGAATTTTGTTGTCTTAGTTTTTAAAATCTAG
CTCTCACGACATAAATTTTGATACTTCTCTTCAAAGTAATAATCAGTAAC
AACTTGAAGTTGTctgtaaaatttttatttatcaaggaaaaaagtcttga
aattcTTAGGCTTTTTTTTGATAGATACCATATATAtagtaataaaataa
taaattgtattctagaaaatttttttgctctCTGTGTAATTCTAGTCTAA
CACGtgattttttatagaaaaaatgtgtttttattTGTTCCAGAATAATT
GCCCAATTTTGATTTGGAATTTCACCTGGTGAATTTCTATATTGTTTAGC
GATACTGAATGATCTATAAaatgagatgccttggagtttttacaagatac
ttcactaattggtcatctaaagtgatagagatgacgcgttctttagaaaa
agtaataagattcttttattacatcttaacgaccaaccaaatcaaataag
agcttgtaaaaactccagcttgtccctatAAAATACACCTTCTAAAAGCA
ATTTTAGTctggaaattacaaattacatTACGCATTGTTGTAACCTCATT
TCCGTAGcacaattcttttgaaattgtaGCAAACTTGTTTCGAAATCAAA
TTGACATTTCTTATTGTCGAGGAATATCAAATTTCCATATTGGTTAATAT
Run BLAST on NCBI

transcript from alignment at scaffold_443:236744..239786+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065696 ID=TCONS_00065696|Name=TCONS_00065696|organism=Clytia hemisphaerica|type=transcript|length=3043bp|location=Sequence derived from alignment at scaffold_443:236744..239786+ (Clytia hemisphaerica)
CCTGGTGAATATATTCCTACTGTGTAAGTAACTTCCTTGTCAAATAAACC
AAACCATTCTAATAAGGCTGGACATTGTctgttggtggccaaaaagggca
actTGTTTAGTAATTTCCACTAAGAAGGCTTACAAGTATGTGCTGCCCTT
AAGGATGCCTTATTTTGAGTCCTTGTAATCATAaaggttgaaaaataaga
aaatgttaacTTTTTGCTCATTGTGTATGATCATAATTTGGTCAGACTAG
TCTGTATTAGcccatattttccttttttccatCCTTTTCAGTCACAAAAA
GGGTCAGAGGGTTGAAAGTTGAGCAGTACAACCGTCAGCTAGCAACCCTT
GTACCAACCACCTCCCCCTGGAGCAGATTCTTTATAGCTTTCTATCAATT
CTCTCATTATCTCATTTAAAATACTTCTTACAGATTTGATAATTACTCAG
CCAATGTTATGGTAGATGGTAAACCAATCAATCTTGGATTGTGGGATACA
GCAGGTTGGTTTTTaatcttttacaaaaatgatttaaatgTCTAACAGTT
TTAGGACAACTAAACGATTAATACAATGTGTCAATTTTGGGATCTTAGAT
CTTACAGAGCTTTATTGTGACTCTGTTTTTATATGTGATCATAACATAAT
CTGTGATAATTAGTCAcaacttcaaaatttcatatttgaaAAGCCTACTG
AAAATCTTCTTTACATTTTCTGATTAGCAATCAGGTAGTTCGAAACCTTC
GCTTTTCTCAACCAATCAGAATGtcttattcattattttttcaagaagtc
tAAAAATAATATGAAACCTGTTTTTACTGGAGAGAATTTATGTAGAATGA
TTTCATGAATTACATACTAAGGTATAAATTTAATTTCTAGGTCAAGAAGA
TTACGACAGATTGAGACCCCTTTCATACCCACAAACAGTAAGTGCCTTTT
GAAGtcaattttactactttatactAAGGGAACTAATTAAGAATAgagaa
tgaaaaattgaatcatgaaatattttgctaGCACTCATTTTGGCAtgcat
tattttttttaatttggcaaGCAACAGGGTGAATTTTCTCTCTAAAGACG
TGTTTAAAACGGAAATGAAGGGCTATTTTGGAAAACTCACCAAATCTACC
AAGATTAATTCtagccaaaattagttcccttaaggtatgttGTTTCTTGT
GTCGCGTATTTAGTTTTTACAGCTTTTCCAGAAGACCCAAATTCATTTAG
GTTCATTATTTCCAACATGAACAAACTCACTGAGTTCTGTGGTTGCTTTA
GCTTTAAAAGCTAAAACCATTGAacttttacatagttataatgtatgttg
attcagcatattgaaataaatagaatcttttgtaatgaataaagaaaaat
gtgaagcaagattttcttcttctttttatttacaaatttgaaaggactct
tttattaaaattttgctgacatcagtttcagacgagtcgggtgtatatat
aacaccgtataattcctttaaTTTGCTTCCTTAGGATGTATTCTTGATCT
GCTTCTCACTGACCAGTCCTGCATCTTTTGAAAACGTCCGTGCAAAATGG
TTTCCAGAAGTTAATCATCACTGTCCTAACGCACCAGTCGTTCTTGTTGG
TACAAAGCTTGATTTACGAGAGGATAAAGaaacaattgaaaaattaaagg
aaAAGAAATTAGTGCCTATTACTGCTACTACCGCTTTACAAATGTCAAAA
GAAATCGGAGCTGTCAAATACCTAGAGTGCTCTGCTCTCACACAAAAAGG
ACTTAAACAAGTTTTCGATGAAGCTATTCGTGCTGTACTTTGTCCTAAGA
AACCAACTAAAGCAAAGAAAGGATGTACGCTGTTATAGAATCGGTTTCAA
AGAAGCACAACATACCCTTCGCACTGTTATTATATGTTGACCCCAAAGTA
AATTAATATACATCGCAATCGACTCCGAAAGCTGGCCATAGTTTTGCTGG
GTTTAACTGGATCAATCTACACTAAGCCAACAAAGTGATTTACACCTGAC
GTGATTTTATCGGTATACAAATTTAATGaagatacacattttttatactG
ATGTACgtaaaaaaactgaaactttATGGTTTTCAGtatttgatattgtt
gtgaCAAGGACTGTCTCAAAAAAGAGTGATAAAATTATTGGAAATTGAAA
CAAAAGATTCAAAgacaaattttcctttttcatcttcaagtgtacatttt
gcaattttcttcatattttgttacatttttgtccatgtttttttttgcct
tttattttttttggggggCGCGAATCTATCTTTCAATACATCTTAATTTT
GACGATTTCTTGGAATTTTGTTGTCTTAGTTTTTAAAATCTAGCTCTCAC
GACATAAATTTTGATACTTCTCTTCAAAGTAATAATCAGTAACAACTTGA
AGTTGTctgtaaaatttttatttatcaaggaaaaaagtcttgaaattcTT
AGGCTTTTTTTTGATAGATACCATATATAtagtaataaaataataaattg
tattctagaaaatttttttgctctCTGTGTAATTCTAGTCTAACACGtga
ttttttatagaaaaaatgtgtttttattTGTTCCAGAATAATTGCCCAAT
TTTGATTTGGAATTTCACCTGGTGAATTTCTATATTGTTTAGCGATACTG
AATGATCTATAAaatgagatgccttggagtttttacaagatacttcacta
attggtcatctaaagtgatagagatgacgcgttctttagaaaaagtaata
agattcttttattacatcttaacgaccaaccaaatcaaataagagcttgt
aaaaactccagcttgtccctatAAAATACACCTTCTAAAAGCAATTTTAG
TctggaaattacaaattacatTACGCATTGTTGTAACCTCATTTCCGTAG
cacaattcttttgaaattgtaGCAAACTTGTTTCGAAATCAAATTGACAT
TTCTTATTGTCGAGGAATATCAAATTTCCATATTGGTTAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041160XLOC_041160Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065696-exon-scaffold_443-1491911889:236744..236766TCONS_00065696-exon-scaffold_443-1491911889:236744..236766Clytia hemisphaericaexon
TCONS_00065696-exon-scaffold_443-1510915933:236744..236766TCONS_00065696-exon-scaffold_443-1510915933:236744..236766Clytia hemisphaericaexon
TCONS_00065696-exon-scaffold_443-1575043694:236744..236766TCONS_00065696-exon-scaffold_443-1575043694:236744..236766Clytia hemisphaericaexon
TCONS_00065696-exon-scaffold_443-1491911889:237177..237247TCONS_00065696-exon-scaffold_443-1491911889:237177..237247Clytia hemisphaericaexon
TCONS_00065696-exon-scaffold_443-1510915933:237177..237247TCONS_00065696-exon-scaffold_443-1510915933:237177..237247Clytia hemisphaericaexon
TCONS_00065696-exon-scaffold_443-1575043694:237177..237247TCONS_00065696-exon-scaffold_443-1575043694:237177..237247Clytia hemisphaericaexon
TCONS_00065696-exon-scaffold_443-1491911889:237634..237680TCONS_00065696-exon-scaffold_443-1491911889:237634..237680Clytia hemisphaericaexon
TCONS_00065696-exon-scaffold_443-1510915933:237634..237680TCONS_00065696-exon-scaffold_443-1510915933:237634..237680Clytia hemisphaericaexon
TCONS_00065696-exon-scaffold_443-1575043694:237634..237680TCONS_00065696-exon-scaffold_443-1575043694:237634..237680Clytia hemisphaericaexon
TCONS_00065696-exon-scaffold_443-1491911889:238278..239786TCONS_00065696-exon-scaffold_443-1491911889:238278..239786Clytia hemisphaericaexon
TCONS_00065696-exon-scaffold_443-1510915933:238278..239786TCONS_00065696-exon-scaffold_443-1510915933:238278..239786Clytia hemisphaericaexon
TCONS_00065696-exon-scaffold_443-1575043694:238278..239786TCONS_00065696-exon-scaffold_443-1575043694:238278..239786Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_443supercontigscaffold_443:236744..239786 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
331.276	325.527	409.044	410.339	229.171	175.902	219.516	220.622	238.783	242.15	277.413	175.7	212.082	186.37	182.152	163.51	190.8	217.889	274.651	254.806	308.385	293.026	244.887	288.894	105.379	115.447	234.761	231.176	257.163	245.12
Blast
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BLAST of TCONS_00065696 vs. Swiss-Prot (Human)
Match: RAC1 (Ras-related C3 botulinum toxin substrate 1 OS=Homo sapiens GN=RAC1 PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 3.022e-85
Identity = 138/164 (84.15%), Postives = 147/164 (89.63%), Query Frame = 1 
Query:    1 PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLTSPASFENVRAKWFPEVNHHCPNAPVVLVGTKLDLRXXXXXXXXXXXXXLVPITATTALQMSKEIGAVKYLECSALTQKGLKQVFDEAIRAVLCPKKPTKAKKGCTLL 492
            PGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSL SPASFENVRAKW+PEV HHCPN P++LVGTKLDLR+DK+TIEKLKEKKL PIT    L M+KEIGAVKYLECSALTQ+GLK VFDEAIRAVLCP    K K+ C LL
Sbjct:   29 PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
The following BLAST results are available for this feature:
BLAST of TCONS_00065696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAC13.022e-8584.15Ras-related C3 botulinum toxin substrate 1 OS=Homo... [more]
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