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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065743 ID=TCONS_00065743|Name=TCONS_00065743|organism=Clytia hemisphaerica|type=transcript|length=1175bp
TGATTTGGTTGGTGCTAACTAGGCTAGTTGGTGCTataagaatcataaaa
aagagaacaaaaggAGTACGTTCGGATTTGAATcgtcattaaaaaaatga
gaaaatcaaaatgtgatagctgcattctttttcaccattTATCGTACATC
TATCTTACAATATATTGATCCAAATTTACAGTGATGCCACTtgctttttc
tcaaaataataAACTATgtaattatatatatttttttacaaaattgtaGA
AATCTCTGTATCATCTTTAGGAATAGCCAAAAGGTGGTGTTGATGGGCAT
TTTCAGGTGGTGTAATTGTCACTGTTGTATTAGCATGATTCAAAACGTAA
GAACTTACACTTCCAAGTAATGTTCTACGAAATAAGTTCAATCCTCTTGA
CCCCATGACATACAATACCATCTGCATTTTTTGTTGCAGCAACATCACAA
ATAGTATGCCCTGCACCATGTTGATTTAACTTTACgatggtttcgctttc
gattccAGCACTCGTAGCTTTCTGCTCGTATTTTTGCACAAGTGATTTTG
AATCATTCATACTCTTCTGGAGCGCTTTTTGaaattcatctttttcataa
aatttaccCAAAACACCAAACGCTTCATGATTTAAAACAGGAGGCTCGTG
AATGTGCACTATTCCAATACGATCACCAGGTCTATGTATGTGTTTAAGAT
ACCAATCGAAGGCTCTCTCGCTATGTTTTGACGAATCTACCGGTAAAACA
AACATTCGTTCTTTGTTTTCTtccatttttaatttcaaaaatattatatc
aaagtttttgaaaaaggtcTCTCAGTATGTAAGCTGTGTACTACTGAAGT
CTTTCTATTCCAATTTGGAAAAGTTGTAAAGGATTTCAAATttatactgt
tttttttttcgtgtgTGTGAAACCAAGGACGTCAAACGTCCTCTCCCTCC
ACCTCCTTGGTGAAACGTTCTGAAAATCATgtacactttcactttcattc
atTGTTTACATGCTGTTCCATGTCCGTCCGCACGATTTTCGAATGTGACT
GCGTCACAGCCAAtgaaatttcgcaaaaattgtaaacaagTTACCCCCGT
AATAATCCAGTTTGATGGATACGGTTTTGAAGCCTATTCAGTCGGTATAA
TTAGACTTGTATTATTGATCAATAT Run BLAST on NCBI protein sequence of TCONS_00065743-protein >TCONS_00065743-protein ID=TCONS_00065743-protein|Name=TCONS_00065743-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MEENKERMFVLPVDSSKHSERAFDWYLKHIHRPGDRIGIVHIHEPPVLNH
EAFGVLGKFYEKDEFQKALQKSMNDSKSLVQKYEQKATSAGIESETIVKL
NQHGAGHTICDVAATKNADGIVCHGVKRIELIS Run BLAST on NCBI transcript from alignment at scaffold_443:223117..224291 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065743 ID=TCONS_00065743|Name=TCONS_00065743|organism=Clytia hemisphaerica|type=transcript|length=1175bp|location=Sequence derived from alignment at scaffold_443:223117..224291 (Clytia hemisphaerica)
ATATTGATCAATAATACAAGTCTAATTATACCGACTGAATAGGCTTCAAA
ACCGTATCCATCAAACTGGATTATTACGGGGGTAActtgtttacaatttt
tgcgaaatttcaTTGGCTGTGACGCAGTCACATTCGAAAATCGTGCGGAC
GGACATGGAACAGCATGTAAACAatgaatgaaagtgaaagtgtacATGAT
TTTCAGAACGTTTCACCAAGGAGGTGGAGGGAGAGGACGTTTGACGTCCT
TGGTTTCACAcacacgaaaaaaaaaacagtataaATTTGAAATCCTTTAC
AACTTTTCCAAATTGGAATAGAAAGACTTCAGTAGTACACAGCTTACATA
CTGAGAgacctttttcaaaaactttgatataatatttttgaaattaaaaa
tggaAGAAAACAAAGAACGAATGTTTGTTTTACCGGTAGATTCGTCAAAA
CATAGCGAGAGAGCCTTCGATTGGTATCTTAAACACATACATAGACCTGG
TGATCGTATTGGAATAGTGCACATTCACGAGCCTCCTGTTTTAAATCATG
AAGCGTTTGGTGTTTTGggtaaattttatgaaaaagatgaatttCAAAAA
GCGCTCCAGAAGAGTATGAATGATTCAAAATCACTTGTGCAAAAATACGA
GCAGAAAGCTACGAGTGCTggaatcgaaagcgaaaccatcGTAAAGTTAA
ATCAACATGGTGCAGGGCATACTATTTGTGATGTTGCTGCAACAAAAAAT
GCAGATGGTATTGTATGTCATGGGGTCAAGAGGATTGAACTTATTTCGTA
GAACATTACTTGGAAGTGTAAGTTCTTACGTTTTGAATCATGCTAATACA
ACAGTGACAATTACACCACCTGAAAATGCCCATCAACACCACCTTTTGGC
TATTCCTAAAGATGATACAGAGATTTCtacaattttgtaaaaaaatatat
ataattacATAGTTtattattttgagaaaaagcaAGTGGCATCACTGTAA
ATTTGGATCAATATATTGTAAGATAGATGTACGATAaatggtgaaaaaga
atgcagctatcacattttgattttctcatttttttaatgacgATTCAAAT
CCGAACGTACTccttttgttctcttttttatgattcttatAGCACCAACT
AGCCTAGTTAGCACCAACCAAATCA Coding sequence (CDS) from alignment at scaffold_443:223117..224291 >TCONS_00065743 ID=TCONS_00065743|Name=TCONS_00065743|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at scaffold_443:223117..224291 (Clytia hemisphaerica)
atggaAGAAAACAAAGAACGAATGTTTGTTTTACCGGTAGATTCGTCAAA
ACATAGCGAGAGAGCCTTCGATTGGTATCTTAAACACATACATAGACCTG
GTGATCGTATTGGAATAGTGCACATTCACGAGCCTCCTGTTTTAAATCAT
GAAGCGTTTGGTGTTTTGggtaaattttatgaaaaagatgaatttCAAAA
AGCGCTCCAGAAGAGTATGAATGATTCAAAATCACTTGTGCAAAAATACG
AGCAGAAAGCTACGAGTGCTggaatcgaaagcgaaaccatcGTAAAGTTA
AATCAACATGGTGCAGGGCATACTATTTGTGATGTTGCTGCAACAAAAAA
TGCAGATGGTATTGTATGTCATGGGGTCAAGAGGATTGAACTTATTTCGT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065743-exon-scaffold_443-1491911889:223117..224291 | TCONS_00065743-exon-scaffold_443-1491911889:223117..224291 | Clytia hemisphaerica | exon |
| TCONS_00065743-exon-scaffold_443-1510915933:223117..224291 | TCONS_00065743-exon-scaffold_443-1510915933:223117..224291 | Clytia hemisphaerica | exon |
| TCONS_00065743-exon-scaffold_443-1575043694:223117..224291 | TCONS_00065743-exon-scaffold_443-1575043694:223117..224291 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_443 | supercontig | scaffold_443:223117..224291 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006950 | response to stress |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006950 |
response to stress |
Blast
The following BLAST results are available for this feature:
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