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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065744 ID=TCONS_00065744|Name=TCONS_00065744|organism=Clytia hemisphaerica|type=transcript|length=1540bp
AGACAGTATTTGCGGTATTTAGATTCTAATTAGCTCCGTAGTAGTTAGCG
TACTTGTTTAGTGAAATCTAaataacggagataattaaAAGCCTCGTGAA
AGTTGTCGAAAGTTCTGTCTACTACAAGTGCAAGCAGCAGATAATTCCTG
ATGTAGATTTTAAATCTACAACTACAATAATGattcttcaaaattgaaat
tgaaatttatggTTCTTAAGTttattattgtttcaattacCCGAAATCTA
TGATAACAGTTGATATCATGTCCCAACCAAGATCACTCAATGCATTTAGA
TGAAGTGAAGCAAAAGAACATCACCTAAACGCTAAAGCAAGATTTGATCG
ATGATTCACCATTCCAAGACGAGTAATTTTGTGTAACCATTGCGAGTATT
GACTTAAAATTTCTTCAACAAACATACAACTGTCGGCTGTCCAGTTGTCA
ATTGCAATTATTGGAGTCTATGCCCGGCTGAACAACTGTCTCTATGTAGG
TTACTACTGGCATCTAGTCAAAAAGGAGAGTGACGTTATGTATTCTTTCT
CTGGAATGGCCCTTTtgattattgttgttgtttccgTTGCATCCATTTAA
ACATGGatttatcaaaagatatttgCTGGACTTTTAATTACACAACGTGA
CATTGCAGGGGCATTGCAGCTAcataaagaagaaattttggcgggaattt
aatttggcggatggccgaaaaagttttttcagagggaatttgatcagtga
aagttatcgtggcATGTTATGACAGAGAGTGtggttgataaacttggtgg
cgtggaattatcaaaacaaatttgttgtcacaAAGAGATTCAGGACGCGc
cctttttaccttttttattttcattcaaaatgaccggacgccgattggag
aattagagaacgcccgccgccgcctaaccgcccatcacccaatgggatta
acaattaacgagtgtgtaacttgcagcgcgagtgacgtcaaacgctccat
cgtttggCCACTGAcatggtcttcttcgttccagacattcgcacgtgttc
cactacagattttttcatatttcaattaaaaggctactcggtgcaaaaga
gaaatcatgtattttttaatatgtcattcattaactcaaatcaaatgact
ttggaggttcggtgaaatgatggcggaattgccgtcccatgttttgtcag
atagtcccaagttagagcagttgatggtaaatttagcgggaatttaattt
ggtggattggACCAAAATCATCCAAATTTAACTTTTACTGCCATCCACCG
CCAAATTTAGATTATTGTTTTCTTCCCCATGTTATCTATTTTAAGGCAAA
TAAATTCcagtcaaatttaatttttcaagccagCAGCCACATTAAATTCC
CtccaaaatttttacttttgttcAAGATTACTTCAACTGTATTATTATAT
AGATTTACTATAATAATTTATTGATTCTTTCTAGCAGCAATTTTTTATTG
TACACAAACAAGAAGCATTCATTGATAAAAGTTAAACACG Run BLAST on NCBI transcript from alignment at scaffold_443:240791..242330 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065744 ID=TCONS_00065744|Name=TCONS_00065744|organism=Clytia hemisphaerica|type=transcript|length=1540bp|location=Sequence derived from alignment at scaffold_443:240791..242330 (Clytia hemisphaerica)
CGTGTTTAACTTTTATCAATGAATGCTTCTTGTTTGTGTACAATAAAAAA
TTGCTGCTAGAAAGAATCAATAAATTATTATAGTAAATCTATATAATAAT
ACAGTTGAAGTAATCTTgaacaaaagtaaaaattttggaGGGAATTTAAT
GTGGCTGctggcttgaaaaattaaatttgactgGAATTTATTTGCCTTAA
AATAGATAACATGGGGAAGAAAACAATAATCTAAATTTGGCGGTGGATGG
CAGTAAAAGTTAAATTTGGATGATTTTGGTccaatccaccaaattaaatt
cccgctaaatttaccatcaactgctctaacttgggactatctgacaaaac
atgggacggcaattccgccatcatttcaccgaacctccaaagtcatttga
tttgagttaatgaatgacatattaaaaaatacatgatttctcttttgcac
cgagtagccttttaattgaaatatgaaaaaatctgtagtggaacacgtgc
gaatgtctggaacgaagaagaccatgTCAGTGGccaaacgatggagcgtt
tgacgtcactcgcgctgcaagttacacactcgttaattgttaatcccatt
gggtgatgggcggttaggcggcggcgggcgttctctaattctccaatcgg
cgtccggtcattttgaatgaaaataaaaaaggtaaaaagggCGCGTCCTG
AATCTCTTtgtgacaacaaatttgttttgataattccacgccaccaagtt
tatcaaccaCACTCTCTGTCATAACATgccacgataactttcactgatca
aattccctctgaaaaaactttttcggccatccgccaaattaaattcccgc
caaaatttcttctttatgTAGCTGCAATGCCCCTGCAATGTCACGTTGTG
TAATTAAAAGTCCAGcaaatatcttttgataaatCCATGTTTAAATGGAT
GCAAcggaaacaacaacaataatcaAAAGGGCCATTCCAGAGAAAGAATA
CATAACGTCACTCTCCTTTTTGACTAGATGCCAGTAGTAACCTACATAGA
GACAGTTGTTCAGCCGGGCATAGACTCCAATAATTGCAATTGACAACTGG
ACAGCCGACAGTTGTATGTTTGTTGAAGAAATTTTAAGTCAATACTCGCA
ATGGTTACACAAAATTACTCGTCTTGGAATGGTGAATCATCGATCAAATC
TTGCTTTAGCGTTTAGGTGATGTTCTTTTGCTTCACTTCATCTAAATGCA
TTGAGTGATCTTGGTTGGGACATGATATCAACTGTTATCATAGATTTCGG
gtaattgaaacaataataaACTTAAGAAccataaatttcaatttcaattt
tgaagaatCATTATTGTAGTTGTAGATTTAAAATCTACATCAGGAATTAT
CTGCTGCTTGCACTTGTAGTAGACAGAACTTTCGACAACTTTCACGAGGC
TTttaattatctccgttattTAGATTTCACTAAACAAGTACGCTAACTAC
TACGGAGCTAATTAGAATCTAAATACCGCAAATACTGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065744-exon-scaffold_443-1491911889:240791..242330 | TCONS_00065744-exon-scaffold_443-1491911889:240791..242330 | Clytia hemisphaerica | exon |
| TCONS_00065744-exon-scaffold_443-1510915933:240791..242330 | TCONS_00065744-exon-scaffold_443-1510915933:240791..242330 | Clytia hemisphaerica | exon |
| TCONS_00065744-exon-scaffold_443-1575043694:240791..242330 | TCONS_00065744-exon-scaffold_443-1575043694:240791..242330 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_443 | supercontig | scaffold_443:240791..242330 . |
Blast
The following BLAST results are available for this feature:
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