TCONS_00065745 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065745
Unique NameTCONS_00065745
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065745 ID=TCONS_00065745|Name=TCONS_00065745|organism=Clytia hemisphaerica|type=transcript|length=351bp
aactttggacttcttagtgaataataatccttTGTATCATGATATAGATA
TTGATATGTCAATCATCGACCAAGTAACTAATGATGAATATGTTGAAAGG
GTTTCATCAAATAATAATTCCATATCAAGCGCTTCTTCGAATGATATAAG
ATTTGTTGATGATACAACAGTTACTTTAATTAAGCCTTTTGAAGAGCAAT
TAGAGAATGAATTTGATTCTGATGATCCACTCAGTGCGTATCGAACACCA
ACATGTGAAACAGTTATTGTATCAGAAGTGCCAAACATTATTTTagatga
tgaaaatgcaattttagctcCAGGTGAAGGTCAAACCCCCAATTCATTAA
C
Run BLAST on NCBI

protein sequence of TCONS_00065745-protein

>TCONS_00065745-protein ID=TCONS_00065745-protein|Name=TCONS_00065745-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
TLDFLVNNNPLYHDIDIDMSIIDQVTNDEYVERVSSNNNSISSASSNDIR
FVDDTTVTLIKPFEEQLENEFDSDDPLSAYRTPTCETVIVSEVPNIILDD
ENAILAPGEGQTPNSL
Run BLAST on NCBI

transcript from alignment at scaffold_443:259642..259992

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065745 ID=TCONS_00065745|Name=TCONS_00065745|organism=Clytia hemisphaerica|type=transcript|length=351bp|location=Sequence derived from alignment at scaffold_443:259642..259992 (Clytia hemisphaerica)
GTTAATGAATTGGGGGTTTGACCTTCACCTGgagctaaaattgcattttc
atcatctAAAATAATGTTTGGCACTTCTGATACAATAACTGTTTCACATG
TTGGTGTTCGATACGCACTGAGTGGATCATCAGAATCAAATTCATTCTCT
AATTGCTCTTCAAAAGGCTTAATTAAAGTAACTGTTGTATCATCAACAAA
TCTTATATCATTCGAAGAAGCGCTTGATATGGAATTATTATTTGATGAAA
CCCTTTCAACATATTCATCATTAGTTACTTGGTCGATGATTGACATATCA
ATATCTATATCATGATACAaaggattattattcactaagaagtccaaagt
t

Coding sequence (CDS) from alignment at scaffold_443:259642..259992

>TCONS_00065745 ID=TCONS_00065745|Name=TCONS_00065745|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_443:259642..259992 (Clytia hemisphaerica)
TAATGAATTGGGGGTTTGACCTTCACCTGgagctaaaattgcattttcat
catctAAAATAATGTTTGGCACTTCTGATACAATAACTGTTTCACATGTT
GGTGTTCGATACGCACTGAGTGGATCATCAGAATCAAATTCATTCTCTAA
TTGCTCTTCAAAAGGCTTAATTAAAGTAACTGTTGTATCATCAACAAATC
TTATATCATTCGAAGAAGCGCTTGATATGGAATTATTATTTGATGAAACC
CTTTCAACATATTCATCATTAGTTACTTGGTCGATGATTGACATATCAAT
ATCTATATCATGATACAaaggattattattcactaagaagtccaaagt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041185XLOC_041185Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065745-proteinTCONS_00065745-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065745-exon-scaffold_443-1491911889:259642..259992TCONS_00065745-exon-scaffold_443-1491911889:259642..259992Clytia hemisphaericaexon
TCONS_00065745-exon-scaffold_443-1510915933:259642..259992TCONS_00065745-exon-scaffold_443-1510915933:259642..259992Clytia hemisphaericaexon
TCONS_00065745-exon-scaffold_443-1575043694:259642..259992TCONS_00065745-exon-scaffold_443-1575043694:259642..259992Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_443supercontigscaffold_443:259642..259992 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.41651	1.46554	1.80751	4.94208	2.23977	4.15015	1.93825	2.08135	0	0.980233	1.77187	0.432439	0.797059	0.734278	0.42362	0.945462	0	0.976548	2.55927	0.70223	0.721163	2.3073	1.04624	0.397879	3.12497	2.67933	3.32303	2.82085	0.726525	2.31465
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065745 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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