|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065750 ID=TCONS_00065750|Name=TCONS_00065750|organism=Clytia hemisphaerica|type=transcript|length=1787bp
GGGAATCTTTGAACGTTCATGAAAAGTATAAAAGGGGTATGAAAGTAAAG
CCGAAATCAAAGCAAATTATTTACCGAGTTGTATATGGTGGCGACATACT
GAAAGAAAACACTTCAAGAAACTAAATAAAAGCTTTACGGAGGTTAGAAG
TACCTATCTTAACCAACTACCTGGTATATCACAAATCAAAGTTTCTTAGC
TTCTGAGGAGGATGAAGGGCTGTTTGGCAGCTTTTGCTTTTTGCTTGATT
TCGGCCATTTTATCAGGAATATTTCACGATGTTTTGAAATCAAAAATTGA
AGAATTTTTCGATCAAGGATCATCTATTCCGAACATTAACCGAGGCCAAT
CAGATGCTTTCGATTGGAAGAAAGCACTTGACGGTTTACGCGTGCTTGGA
GGGTTGAGGGACAATGGGGAGTTTGATCGAGGAGGTGGTAAAATGGTAAC
CTTTTCGTATAAAGAAACGATGCGTTTCGAGAAATATCTCCCACGTTTGA
AGTATCATGGTATCTGTTTTGATAAAACTACTGGCATCTTTGCTCAATCT
TTGACCAATGGGAGAACTGGCAACGTCGACAAATGCTTGGAAGAGCTGTT
TCAAAAGTTAGCTCGCAAAGGGGAATTGTGAGCTGGCACTTTCATTTTTC
GAGATTTTCCATTTTTTTTGTAGTTTTATTGAAGTTCTCTGTATTGTAGT
GTCTTATTGAAGTTCTTTGCAAGAAAACTAAAGTGTGGCAGTAGCAGCAA
ATTGATCGAGTAgacggaaaattcttattcgccttaaaaaacggattttc
gtatattggggaaattttctttaaccaaataagaaaatatagcttttctc
aatgttgactctttatttttttctgatttttagcacaatgatgcaaaatg
acaatgcctaaaatgtgacagagcctcaattttcgaaaaaaagtatattt
tgacaaatttgggccaaaaactgcttaaaaatagggttttttgccgactt
tttttctttttttgttgactttttttcttttttgtcaactttttttcttt
ttttgagaactttttttctttttttctttttttcaaaaaaaaggtttttt
ttttaatttaacttttcttTTCGAGACTGCTTTCTTTTAGTTGATgatgg
caaatttttgatattatgctcctaataaagtgtagaactgacaaaaaaga
attgacaagaaaaaaaaaaaattacggcTACGAACGGATTCAatgtgaaa
agtagataaagaaaatgggcttatttgttaagtttcgaccatcTGGTCCC
GAGAAATGGTATTTTGAAGGCGAAAATGGACATTTTTGGCGTTTTCCGAT
GACGTGAGCATTTTTCTAGGAGCATATTTTAAAAGGAAAAATCTTTCTCA
CAGCTGGCGGCTGGATAGCTCTAATTTATTAGTATCCATAGTTGGTATTG
TTTGTTAACTTTCGACATGAACTTAGATCTCGACAGATATTTTAGTTTAA
GTATTGAAAATTATCGATATTTTCCGCTGAGTCAGCAGTTTTTCAGTATA
TATACACCTTAGatatgaattatctcgagatctagacactAAAACATACC
ATTTTTAAACCTAGgggtttttcgaaaaaaagaaaaaaaagtccgcaaaa
aaaagaaaaaaagttttcaaaaaaataaaaaaagttgttaaccctatttt
tatcagggggggtgttttccaccaggctggcactcttttgctaatagctc
actgaaaattttttttaacactctgaaagtttttgac Run BLAST on NCBI protein sequence of TCONS_00065750-protein >TCONS_00065750-protein ID=TCONS_00065750-protein|Name=TCONS_00065750-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MKGCLAAFAFCLISAILSGIFHDVLKSKIEEFFDQGSSIPNINRGQSDAF
DWKKALDGLRVLGGLRDNGEFDRGGGKMVTFSYKETMRFEKYLPRLKYHG
ICFDKTTGIFAQSLTNGRTGNVDKCLEELFQKLARKGEL Run BLAST on NCBI transcript from alignment at scaffold_444:340..4250+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065750 ID=TCONS_00065750|Name=TCONS_00065750|organism=Clytia hemisphaerica|type=transcript|length=3911bp|location=Sequence derived from alignment at scaffold_444:340..4250+ (Clytia hemisphaerica)
GGGAATCTTTGAACGTTCATGAAAAGTATAAAAGGGGTATGAAAGTAAAG
CCGAAATCAAAGCAAATTATTTACCGAGTTGTATATGGTGGCGACATACT
GAAAGAAAACACTTCAAGAAACTAAATAAAAGCTTTACGGAGGTTAGAAG
TACCTATCTTAACCAACTACCTGGTATATCACAAATCAAAGTTTCTTAGC
TTCTGAGGAGGATGAAGGGCTGTTTGGCAGCTTTTGCTTTTTGCTTGATT
TCGGCCATTTTATCAGGTTAGTTATTTTGTTTCGTTTTTGTTTGATAGAT
TTTGAATCATTTAACGTATCTGTTACCATTTGCTTACTCAGCATCTTTAA
ACAAAGGAAAACTAATTTTCATCCCCagaaaccttgaaaaaaattctatc
ttTTCTTGTAATGTACTTGTGAAGTCAGGCTTTTTATCGCAAGATTAAAT
CTTACAAAAACACACGAAACACACGAGTGCaaattaaccctattagcccc
aggggggggggggggggaaTCTACCACGCTGGTGTTCTTTTGTGTATATC
ACAGAGAAAAATTTTTGAAACGAATTGAAACTTTCTGACTTTTAATAAAA
TCTTATTAAGAGTACTTATGCAAATTTTTAGGGTCATAGATCCTCTAGGT
CAGGCTTTATGACTTTATTGTGAAACATGACATAAAACAAAGCTAAAATC
GCTTAAAACTTAAAATTCTAAAATTGCGATAACTTCTGAAGTTTTGATCC
AATCATATTCAAAATTTGACAGGTTATAGGTAATAACAATGTGATTTAAA
AAAACATTAAAAAAAATGTTGAAATTGATGACGTCAAAACCGGCAGTTAT
GTTAAAGAACAACCTTTTATCTTTCAGAATCTTTAAACAGAATCTAAATA
TCTTTATTGCTTCGACTGTGAAAGACATTTTTGTAAACCATACATTTTGG
CTTTTTTCCGACAGGTGGAAATTTTGTGATGACGTCATCGCTTTTTGAAT
GCCGTTATCAAAATTCTATTTCTTCCTGGATTGTGTCATGATGGAGAACA
TCTGTACCAATTTTCATGGCCATAGCTCTTCTAGATCAAAAATAATCGAG
GGTGGTAGATTCTACCCCCTGGGGCTACAAAAACCAAAAAAGGTTGGGGT
TAATAGTGTACTACTTTTCATTAAATCTTTGGGGCGAAGAGCACTCTTAT
TTTTATATCATTCTATTTTTCTCGAAGAATTCTCTGCTTTGTTAACATAG
GGATGTGCGCAGTCTACCATTTACTTCGCGCTAAAAGTTACCGTGGCCGA
TTTATCATTTTTCTATTAGGAATATTTCACGATGTTTTGAAATCAAAAAT
TGAAGAATTTTTCGATCAAGGATCATCTATTCCGAACATTAACCGAGGTA
ATGATGTAAAAATTGAAAAAGGAAAATTTCTAAAATAGATTTCTGTAGAA
AAAATGCTTGCTTTTGGAGGCTGATTTCCTTGAAAGCATTTTGTTTTCAT
TTTAGGCCAATCAGATGCTTTCGATTGGAAGAAAGCACTTGACGGTTTAC
GCGTGCTTGGAGGGTTGAGGGACAATGGGGAGGTTAGTATCATTCGGTTT
AATACAGTAACAATGTTTAATACAGTGTGTCTGCAAGAAAAGTGACTTAC
AATGCTAATTTCAATCATTTTTCAAAAACCTTTTCTAGTTAATTCGGATT
AGAATATCGATTGACCGAGCAATAATGGCGGTTTTACGCTTTTTTTCGGG
AAACAATGTATTCATAAACTTAATTACTGATTGATTACGCGTTTCAAAAT
CTTACAAGTAATTTTAAAACTACAATATGAAAGGGATGGCCCGTGCATGA
AGGAAGCATTTTTCAAAAGGTCATGTCTAGCTACCTTCATACTATACCAT
AGTATAGTTTTACATAAATTTAAATAATAAGACTCGTGATTTTTAACAAG
TTATTTTGCGTTTTTACGCGACACTTTAAGAGCCTTTTCCCTTGATGTTT
CGTAAATTTGGGACCCTGTCAGAGTCTTAATTGCTATTTTATGGTTTTTG
TCACTAGGTATGACACTATATATAACTAGAACTTCTATAATAACATTTTG
GTGTTGTAAACATTGAAATTTGAAACCCTTACCCACCCCCATCACTGAAA
CTTTCTCACCAGATCACTGAAATGAGTGTGTAGTTATAGTTAAATCTTTT
ATAGGTGGTGATAGATACGAATGTTAGCATTCCTCCTAGGTTAGGGTCGA
AATATAACATAAACTTAACAAGCCAAGATAGGGCAATTTTGTGAAATTTT
TGAACATTCCTTGTGGAAAGTAATTACAATTAATTTACTTGAAATGCTCG
AATAATGGCAATTGTTCATATTCAAAGATGGTGATATTCTTAGCATTTTT
TTGCCGTTTTACATCATGAATATTCTTGTAAAATTCTACAAGTTTACTTT
AAAAAACATGCATGCAAAATTTCCATACATCTTATCTAGATGAAAAAATG
ACGGCATGCATGCGTGAGTTGACCTTTTTTTGATTCTGTTTACAGTTTGA
TCGAGGAGGTGGTAAAATGGTAACCTTTTCGTATAAAGAAACGATGCGTT
TCGAGAAATATCTCCCACGTTTGAAGTATCATGGTATCTGTTTTGATAAA
ACTACTGGCATCTTTGCTCAATCTTTGACCAATGGGAGAACTGGCAACGT
CGACAAATGCTTGGAAGAGCTGTTTCAAAAGTTAGCTCGCAAAGGGGAAT
TGTGAGCTGGCACTTTCATTTTTCGAGATTTTCCATTTTTTTTGTAGTTT
TATTGAAGTTCTCTGTATTGTAGTGTCTTATTGAAGTTCTTTGCAAGAAA
ACTAAAGTGTGGCAGTAGCAGCAAATTGATCGAGTAgacggaaaattctt
attcgccttaaaaaacggattttcgtatattggggaaattttctttaacc
aaataagaaaatatagcttttctcaatgttgactctttatttttttctga
tttttagcacaatgatgcaaaatgacaatgcctaaaatgtgacagagcct
caattttcgaaaaaaagtatattttgacaaatttgggccaaaaactgctt
aaaaatagggttttttgccgactttttttctttttttgttgacttttttt
cttttttgtcaactttttttctttttttgagaactttttttctttttttc
tttttttcaaaaaaaaggttttttttttaatttaacttttcttTTCGAGA
CTGCTTTCTTTTAGTTGATgatggcaaatttttgatattatgctcctaat
aaagtgtagaactgacaaaaaagaattgacaagaaaaaaaaaaaattacg
gcTACGAACGGATTCAatgtgaaaagtagataaagaaaatgggcttattt
gttaagtttcgaccatcTGGTCCCGAGAAATGGTATTTTGAAGGCGAAAA
TGGACATTTTTGGCGTTTTCCGATGACGTGAGCATTTTTCTAGGAGCATA
TTTTAAAAGGAAAAATCTTTCTCACAGCTGGCGGCTGGATAGCTCTAATT
TATTAGTATCCATAGTTGGTATTGTTTGTTAACTTTCGACATGAACTTAG
ATCTCGACAGATATTTTAGTTTAAGTATTGAAAATTATCGATATTTTCCG
CTGAGTCAGCAGTTTTTCAGTATATATACACCTTAGatatgaattatctc
gagatctagacactAAAACATACCATTTTTAAACCTAGgggtttttcgaa
aaaaagaaaaaaaagtccgcaaaaaaaagaaaaaaagttttcaaaaaaat
aaaaaaagttgttaaccctatttttatcagggggggtgttttccaccagg
ctggcactcttttgctaatagctcactgaaaattttttttaacactctga
aagtttttgac Coding sequence (CDS) from alignment at scaffold_444:340..4250+ >TCONS_00065750 ID=TCONS_00065750|Name=TCONS_00065750|organism=Clytia hemisphaerica|type=CDS|length=1680bp|location=Sequence derived from alignment at scaffold_444:340..4250+ (Clytia hemisphaerica)
ATGAAGGGCTGTTTGGCAGCTTTTGCTTTTTGCTTGATTTCGGCCATTTT
ATCAGGAATATTTCACGATGTTTTGAAATCAAAAATTGAAGAATTTTTCG
ATCAAGGATCATCTATTCCGAACATTAACCGAGGCCAATCAGATGCTTTC
GATTGGAAGAAAGCACTTGACGGTTTACGCGTGCTTGGAGGGTTGAGGGA
CAATGGGGAGTTTGATCGAGGAGGTGGTAAAATGGTAACCTTTTCGTATA
AAGAAACGATGCGTTTCGAGAAATATCTCCCACGTTTGAAGTATCATGGT
ATCTGTTTTGATAAAACTACTGGCATCTTTGCTCAATCTTTGACCAATGG
GAGAACTGGCAACGTCGACAAATGCTTGGAAGAGCTGTTTCAAAAGTTAG
CTCGCAAAGGGGAATTGTGAATGAAGGGCTGTTTGGCAGCTTTTGCTTTT
TGCTTGATTTCGGCCATTTTATCAGGAATATTTCACGATGTTTTGAAATC
AAAAATTGAAGAATTTTTCGATCAAGGATCATCTATTCCGAACATTAACC
GAGGCCAATCAGATGCTTTCGATTGGAAGAAAGCACTTGACGGTTTACGC
GTGCTTGGAGGGTTGAGGGACAATGGGGAGTTTGATCGAGGAGGTGGTAA
AATGGTAACCTTTTCGTATAAAGAAACGATGCGTTTCGAGAAATATCTCC
CACGTTTGAAGTATCATGGTATCTGTTTTGATAAAACTACTGGCATCTTT
GCTCAATCTTTGACCAATGGGAGAACTGGCAACGTCGACAAATGCTTGGA
AGAGCTGTTTCAAAAGTTAGCTCGCAAAGGGGAATTGTGAATGAAGGGCT
GTTTGGCAGCTTTTGCTTTTTGCTTGATTTCGGCCATTTTATCAGGAATA
TTTCACGATGTTTTGAAATCAAAAATTGAAGAATTTTTCGATCAAGGATC
ATCTATTCCGAACATTAACCGAGGCCAATCAGATGCTTTCGATTGGAAGA
AAGCACTTGACGGTTTACGCGTGCTTGGAGGGTTGAGGGACAATGGGGAG
TTTGATCGAGGAGGTGGTAAAATGGTAACCTTTTCGTATAAAGAAACGAT
GCGTTTCGAGAAATATCTCCCACGTTTGAAGTATCATGGTATCTGTTTTG
ATAAAACTACTGGCATCTTTGCTCAATCTTTGACCAATGGGAGAACTGGC
AACGTCGACAAATGCTTGGAAGAGCTGTTTCAAAAGTTAGCTCGCAAAGG
GGAATTGTGAATGAAGGGCTGTTTGGCAGCTTTTGCTTTTTGCTTGATTT
CGGCCATTTTATCAGGAATATTTCACGATGTTTTGAAATCAAAAATTGAA
GAATTTTTCGATCAAGGATCATCTATTCCGAACATTAACCGAGGCCAATC
AGATGCTTTCGATTGGAAGAAAGCACTTGACGGTTTACGCGTGCTTGGAG
GGTTGAGGGACAATGGGGAGTTTGATCGAGGAGGTGGTAAAATGGTAACC
TTTTCGTATAAAGAAACGATGCGTTTCGAGAAATATCTCCCACGTTTGAA
GTATCATGGTATCTGTTTTGATAAAACTACTGGCATCTTTGCTCAATCTT
TGACCAATGGGAGAACTGGCAACGTCGACAAATGCTTGGAAGAGCTGTTT
CAAAAGTTAGCTCGCAAAGGGGAATTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065750-exon-scaffold_444-1491911889:340..605 | TCONS_00065750-exon-scaffold_444-1491911889:340..605 | Clytia hemisphaerica | exon |
| TCONS_00065750-exon-scaffold_444-1510915933:340..605 | TCONS_00065750-exon-scaffold_444-1510915933:340..605 | Clytia hemisphaerica | exon |
| TCONS_00065750-exon-scaffold_444-1575043694:340..605 | TCONS_00065750-exon-scaffold_444-1575043694:340..605 | Clytia hemisphaerica | exon |
| TCONS_00065750-exon-scaffold_444-1491911889:1659..1736 | TCONS_00065750-exon-scaffold_444-1491911889:1659..1736 | Clytia hemisphaerica | exon |
| TCONS_00065750-exon-scaffold_444-1510915933:1659..1736 | TCONS_00065750-exon-scaffold_444-1510915933:1659..1736 | Clytia hemisphaerica | exon |
| TCONS_00065750-exon-scaffold_444-1575043694:1659..1736 | TCONS_00065750-exon-scaffold_444-1575043694:1659..1736 | Clytia hemisphaerica | exon |
| TCONS_00065750-exon-scaffold_444-1491911889:1845..1921 | TCONS_00065750-exon-scaffold_444-1491911889:1845..1921 | Clytia hemisphaerica | exon |
| TCONS_00065750-exon-scaffold_444-1510915933:1845..1921 | TCONS_00065750-exon-scaffold_444-1510915933:1845..1921 | Clytia hemisphaerica | exon |
| TCONS_00065750-exon-scaffold_444-1575043694:1845..1921 | TCONS_00065750-exon-scaffold_444-1575043694:1845..1921 | Clytia hemisphaerica | exon |
| TCONS_00065750-exon-scaffold_444-1491911889:2885..4250 | TCONS_00065750-exon-scaffold_444-1491911889:2885..4250 | Clytia hemisphaerica | exon |
| TCONS_00065750-exon-scaffold_444-1510915933:2885..4250 | TCONS_00065750-exon-scaffold_444-1510915933:2885..4250 | Clytia hemisphaerica | exon |
| TCONS_00065750-exon-scaffold_444-1575043694:2885..4250 | TCONS_00065750-exon-scaffold_444-1575043694:2885..4250 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_444 | supercontig | scaffold_444:340..4250 + |
Blast
The following BLAST results are available for this feature:
|
