TCONS_00065778 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065778
Unique NameTCONS_00065778
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length538

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065778 ID=TCONS_00065778|Name=TCONS_00065778|organism=Clytia hemisphaerica|type=transcript|length=538bp
CAACTCTGGTTTGGTACGTAGCTATGAATAACACAGGAAGtagtcaaaaa
tttcaaatttttgattttaaaagtcaACTTcatttgatgtaaaaataaac
TATGGTAATAAGGTATTCATTGAAACCACATTCTACCCTAAATTTGATTG
ATCGTAGTCAATAGACTTTTTGCAGAAACCATCAACGAACTCAACGGTCA
ATGTATGCCACAAATGCCTGATTTCGATCGGTTAGCAAGAgacaaaacaa
tcaaaacaatggtTGGGAAATTGAGCACACTACACTGAATATATTCAGCA
TGAGCTGGAGAATTTCTCTTATATTGTAACTTAATGCTATAAATATGCAG
TTAATGGACCACGATGAAAAGCtaaacaaatttcaatttttggatgTTCA
TTTATAATATATAGAGTGTTTTATAGACCATTTTTCAAAGACTATGACTC
AGACTGCACTCAACGCAAGTGTACTGATCATCCAATGATGGCCTGGGCga
gcatcaaaagttatgttctgTTTGTGTCATAAAACACC
Run BLAST on NCBI

transcript from alignment at scaffold_444:148324..148861

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065778 ID=TCONS_00065778|Name=TCONS_00065778|organism=Clytia hemisphaerica|type=transcript|length=538bp|location=Sequence derived from alignment at scaffold_444:148324..148861 (Clytia hemisphaerica)
GGTGTTTTATGACACAAAcagaacataacttttgatgctcGCCCAGGCCA
TCATTGGATGATCAGTACACTTGCGTTGAGTGCAGTCTGAGTCATAGTCT
TTGAAAAATGGTCTATAAAACACTCTATATATTATAAATGAAcatccaaa
aattgaaatttgtttaGCTTTTCATCGTGGTCCATTAACTGCATATTTAT
AGCATTAAGTTACAATATAAGAGAAATTCTCCAGCTCATGCTGAATATAT
TCAGTGTAGTGTGCTCAATTTCCCAaccattgttttgattgttttgtcTC
TTGCTAACCGATCGAAATCAGGCATTTGTGGCATACATTGACCGTTGAGT
TCGTTGATGGTTTCTGCAAAAAGTCTATTGACTACGATCAATCAAATTTA
GGGTAGAATGTGGTTTCAATGAATACCTTATTACCATAgtttatttttac
atcaaatgAAGTtgacttttaaaatcaaaaatttgaaatttttgactaCT
TCCTGTGTTATTCATAGCTACGTACCAAACCAGAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041210XLOC_041210Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065778-exon-scaffold_444-1491911889:148324..148861TCONS_00065778-exon-scaffold_444-1491911889:148324..148861Clytia hemisphaericaexon
TCONS_00065778-exon-scaffold_444-1510915933:148324..148861TCONS_00065778-exon-scaffold_444-1510915933:148324..148861Clytia hemisphaericaexon
TCONS_00065778-exon-scaffold_444-1575043694:148324..148861TCONS_00065778-exon-scaffold_444-1575043694:148324..148861Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_444supercontigscaffold_444:148324..148861 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.210312	0	0	0	0	0.277278	0.389377	1.09045	0.112558	0.655508	0.430905	0.0717177	0.148959	0.0612323	0.0657117	0	0.0829726	0.229262	0.35986	0	0	0.123642	0.337224	0.115778	0	0.147863	0	0.119689	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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