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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065792 ID=TCONS_00065792|Name=TCONS_00065792|organism=Clytia hemisphaerica|type=transcript|length=1784bp
CTTTTGTTATGCccgtttttaaaaaaattccaaaatagaaaatatagGAC
GGAGGCCTTGTGGTTCTACAatataagataaaaaaaagataaattttggt
TTAGATTGTATATTTCAATTCAAATAAGACATAGTACATCGAtacacaaa
caaaaaaaaacaaataaacaaaaaaaaaggttgaaattcatatctaaaaa
aatgttctacgttttatagatttttttttatttcaaaatttctaaacgAA
AAAGGTATTGATTGACccataaataaaaaatacattttgttCACAATATA
GTCGAATCTGGAAAGTAAGGCATGTACGCCGGATATCTCCGGCGCAGATT
TTGGATTTCATAGGCTTACACAAAGGCTACGCCTTGAAATCTCTGGCGTA
AATATTCTCTTCTTTCCAGACTGGATTACTACTTACTATATAGCTCTCGA
TTCTGATTCGAATTACATCAAGTATTATATAAGTCTTGGAGTTGTATAAT
GAATGATAGAAATTCGAATCAAAGAGAGCCATCCCACTGTAACTACTTCG
AATGAAAAGTTTTATTCGAAGGATTTTCCATAAAAGGATCGATTTTTTTG
TATAAGAGAGGGCCCATTGTAACTAGTAACTATGGAACGaataaactttt
tcattcaGAAACCCTATagtagaaaaaaatctaaaaagtaaTACTTTACT
ATCACCCCGTGCTTGCTATGTGAgaaaataataagaacaagtGAAACGTC
CCAGAAAAGTGACGATATCAAAATATTATTCAAAGCAAAGGGCACGTTAT
GCAAAtcttataaaagtttttttatgtcTTCTATAGCTGGacgaagtttg
aaaaaaagtcccaaaatggaaaaaaaattacgttATTTGCACTGCTTGTA
TTATAACCACTTCACTGAAAAATATCGTCAACAAGTGCATTCAAAAACCT
CTcacagaaaacaaaataataaattacTGAGTTGATATATAATTGGaaag
agaaaataaatttttagtgATGTATACATAGTAAAATATATAACAGGATT
TACTACTAACATTTTATGAACTGGCCTCATAGAATATGTCTGACCTAACG
TTTAAAATGCTCGTTTATAATGCAAAAATTCGTTTGTTTTCTTCTTCGGT
TTTACTTTTGGAATAAATAagatataccttaagggaacttattttggcag
gaactaattttggcggatttggcgaatgaatttagacaaaattcgccaaa
attagttcccgccaaagtAAGTTCCCTTAAGATAATTACGAAAACAAAAC
TTGAGAGATGCAAATTCTGCAGTTGCAGTCACTAAGGATTCCTTGGGATA
CTTTTTTTGATATCACAGGGGTTCAAAATACCCAAGTTTAACTTGAAAGA
TTTTGCAAgtaattaatttcatttttcgctCAAAATGTCTTGCATATGTA
ATAAAAACTAGGTGGTTAAcattaaaacttaattttcataATGTTATTAC
GATATTCTCTTTGGATCACACTCCAGCAAACCATCGCTGGTATTAAACAA
AGTTAATCCTTGTGAAGTAGGCAACAAACCTTGTAGTAATCCCCAGCACG
ACTGATATAAGATAGAAATATAAAGTATATTAATTCTGCACGAAAAGAAT
GAAGTGAGAGAGAAGGAAGATCAACAACAACCACCACCTTGTTGGCCGCC
GGCTCCGCCACCCATCGGTGAAGGACTAGCCGCTGAATGTTGTGGTCCGA
TCTTGATTCCATTCgactaaaaaaaataaagaaa Run BLAST on NCBI transcript from alignment at scaffold_445:59394..62146+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065792 ID=TCONS_00065792|Name=TCONS_00065792|organism=Clytia hemisphaerica|type=transcript|length=2753bp|location=Sequence derived from alignment at scaffold_445:59394..62146+ (Clytia hemisphaerica)
CTTTTGTTATGCccgtttttaaaaaaattccaaaatagaaaatatagGAC
GGAGGCCTTGTGGTTCTACAatataagataaaaaaaagataaattttggt
TTAGATTGTATATTTCAATTCAAATAAGACATAGTACATCGAtacacaaa
caaaaaaaaacaaataaacaaaaaaaaaggttgaaattcatatctaaaaa
aatgttctacgttttatagatttttttttatttcaaaatttctaaacgAA
AAAGGTATTGATTGACccataaataaaaaatacattttgttCACAATATA
GTCGAATCTGGAAAGTAAGGCATGTACGCCGGATATCTCCGGCGCAGATT
TTGGATTTCATAGGCTTACACAAAGGCTACGCCTTGAAATCTCTGGCGTA
AATATTCTCTTCTTTCCAGACTGGATTACTACTTACTATATAGCTCTCGA
TTCTGATTCGAATTACATCAAGTATTATATAAGTCTTGGAGTTGTATAAT
GAATGATAGAAATTCGAATCAAAGAGAGCCATCCCACTGTAACTACTTCG
AATGAAAAGTTTTATTCGAAGGATTTTCCATAAAAGGATCGATTTTTTTG
TATAAGAGAGGGCCCATTGTAACTAGTAACTATGGAACGaataaactttt
tcattcaGAAACCCTATagtagaaaaaaatctaaaaagtaaTACTTTACT
ATCACCCCGTGCTTGCTATGTGAgaaaataataagaacaagtGAAACGTC
CCAGAAAAGTGACGATATCAAAATATTATTCAAAGCAAAGGGCACGTTAT
GCAAAtcttataaaagtttttttatgtcTTCTATAGCTGGacgaagtttg
aaaaaaagtcccaaaatggaaaaaaaattacgttATTTGCACTGCTTGTA
TTATAACCACTTCACTGAAAAATATCGTCAACAAGTGCATTCAAAAACCT
CTcacagaaaacaaaataataaattacTGAGTTGATATATAATTGGaaag
agaaaataaatttttagtgATGTATACATAGTAAAATATATAACAGGATT
TACTACTAACATTTTATGAACTGGCCTCATAGAATATGTCTGACCTAACG
TTTAAAATGCTCGTTTATAATGCAAAAATTCGTTTGTTTTCTTCTTCGGT
TTTACTTTTGGAATAAATAagatataccttaagggaacttattttggcag
gaactaattttggcggatttggcgaatgaatttagacaaaattcgccaaa
attagttcccgccaaagtAAGTTCCCTTAAGATAATTACGAAAACAAAAC
TTGAGAGATGCAAATTCTGCAGTTGCAGTCACTAAGGATTCCTTGGGATA
CTTTTTTTGATATCACAGGGGTTCAAAATACCCAAGTTTAACTTGAAAGA
TTTTGCAAgtaattaatttcatttttcgctCAAAATGTCTTGCATATGTA
ATAAAAACTAGGTGGTTAAcattaaaacttaattttcataATGTTATTAC
GATATTCTCTTTGGATCACACTCCAGCAAACCATCGCTGGTATTAAACAA
AGTTAATCCTTGTGAAGTAGGCAACAAACCTTGTTAAACAGNTGGAACGa
ataaactttttcattcaGAAACCCTATagtagaaaaaaatctaaaaagta
aTACTTTACTATCACCCCGTGCTTGCTATGTGAGAAAATAATTAGAACAA
GTGAAACGTCCTAGAAAAGTGACGATATCAAAATATTATTCAAAGCAAAG
GGCACGTTATGCAAATcttaagaaagttttttttatgtCTTCTATAGCTG
GacgaagtttgaaaaaaagtcccaaaatggaagaaaatttacGTTATTTG
CACTGCTTGTATTATAGCCACTTCACTGAAAAAAACGTCAACAAGTGCAT
TCAAAAACCTCTcacagaaaacaaaataataaattacTGAGTTGATATAT
AATTGGaaagagaaaataaatttttagtgATGTATACATAGTAAAATATA
TAACAGGATTTACTACTAACATTTTATGAACTGGCCTCATAGAATATGTC
TGACCTAACGTTTAAAATGCTCGTTTATAATGCAAAAATTCGTTTGTTTT
CTTCTTCGGTTTTACTTTTGGAATAAATAagatataccttaagggaactt
attttggcaggaactaattttggcggatttggcgaatgaatttagacaaa
attcgccaaaattagttcccgccaaagtAAGTTCCCTTAAGATAATTACG
AAAACAAAACTTGAGAGATGCAAATTCTGCAGTTGCAGTCACTAAGGATT
CCTTGGGATACTTTTTTTGATATCACAGGGGTTCAAAATACCCAAGTTTA
ACTTGAAAGATTTTGCAAgtaattaatttcatttttcgctCAAAATGTCT
TGCATATGTAATAAAAACTAGGTGGTTAAcattaaaacttaattttcata
ATGTTATTACGATATTCTCTTTGGATCACACTCCAGCAAACCATCGCTGG
TATTAAACAAAGTTAATCCTTGTGAAGTAGGCAACAAACCTTGTTAAACA
GGTAGTAATCCCCAGCACGACTGATATAAGATAGAAATATAAAGTATATT
AATTCTGCACGAAAAGAATGAAGTGAGAGAGAAGGAAGATCAACAACAAC
CACCACCTTGTTGGCCGCCGGCTCCGCCACCCATCGGTGAAGGACTAGCC
GCTGAATGTTGTGGTCCGATCTTGATTCCATTCgactaaaaaaaataaag
aaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065792-exon-scaffold_445-1491911889:59394..60975 | TCONS_00065792-exon-scaffold_445-1491911889:59394..60975 | Clytia hemisphaerica | exon |
| TCONS_00065792-exon-scaffold_445-1510915933:59394..60975 | TCONS_00065792-exon-scaffold_445-1510915933:59394..60975 | Clytia hemisphaerica | exon |
| TCONS_00065792-exon-scaffold_445-1575043694:59394..60975 | TCONS_00065792-exon-scaffold_445-1575043694:59394..60975 | Clytia hemisphaerica | exon |
| TCONS_00065792-exon-scaffold_445-1491911889:61945..62146 | TCONS_00065792-exon-scaffold_445-1491911889:61945..62146 | Clytia hemisphaerica | exon |
| TCONS_00065792-exon-scaffold_445-1510915933:61945..62146 | TCONS_00065792-exon-scaffold_445-1510915933:61945..62146 | Clytia hemisphaerica | exon |
| TCONS_00065792-exon-scaffold_445-1575043694:61945..62146 | TCONS_00065792-exon-scaffold_445-1575043694:61945..62146 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_445 | supercontig | scaffold_445:59394..62146 + |
Blast
The following BLAST results are available for this feature:
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