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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065800 ID=TCONS_00065800|Name=TCONS_00065800|organism=Clytia hemisphaerica|type=transcript|length=915bp CGCGCCTGTTGGCATCAAAATTTCGTCTTTCATATATCATATTGTAGAAA CATTTTTCGATGGCATTTCATCGGGCCATAACAAACGATGTGGATATCTT CTGCAAGTACAAAGAACGAGGCTGTCTTTGGACTGGCTCCATAAATGATT TTGAGAAGCATGAGAAATTGAATTGCCAATTTACAACAATCAAGTGTTCC TTTCAACAATGTAACATGACATTTTGGAGAAAATTCCAACCCAACCATGA GAAGATTTGTCAATATCGTCTAGCTCATTGTGATTACTGCaaaaataaag atcttcgttttGTTGACTTAGAGGCTCATCATGTTGTATGCGATCAATTT CCATCGGGTTGTGGAAATATTGGCTGCCACGTTATCTTACCAAGGGAAAA GATGATTAATTCCCATAGTAAGGAGTGTCCATTTGAGGTCGTTCCTTGTA AGTTCCACGAGATTGGCTGCAAAATCACTATATTGAGATCAAAACAGAAG GAGCATGATGAGACCTTCCAATCACAACACATGGATTTATTACTCCACAA CACTGTTCAATTGAAAAAAGAGCTTCAAAGCTCGCAGCAAGAgcttgaaa aacaaaaagctcTTAATGAGAAACAAAAAGGCCTGAATGAGAAAATTATC CATGCTTTGCAAGCAACCAATGGATTCATAGACCTCACAGTAGCTCGTTT GTTTGAGTTGCTAAGGAAACCGCGTTCTCCGTACGGGCTCTTTGAGGATG CTATTCAGTACGACAGCTATCGACTTAGTACAAAAGAACAACGGTTCTTA TCTTTAAGTCATGAAGACCGGATCAAAACCCTTCTTTCAAGAATGGAGAT CGGTGAAATTTACCGCATTAATGAGAATGTAGCGATATTTAAGATACAAG TATCGAAAGCACGTG Run BLAST on NCBI protein sequence of TCONS_00065800-protein >TCONS_00065800-protein ID=TCONS_00065800-protein|Name=TCONS_00065800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
MAFHRAITNDVDIFCKYKERGCLWTGSINDFEKHEKLNCQFTTIKCSFQQ CNMTFWRKFQPNHEKICQYRLAHCDYCKNKDLRFVDLEAHHVVCDQFPSG CGNIGCHVILPREKMINSHSKECPFEVVPCKFHEIGCKITILRSKQKEHD ETFQSQHMDLLLHNTVQLKKELQSSQQELEKQKALNEKQKGLNEKIIHAL QATNGFIDLTVARLFELLRKPRSPYGLFEDAIQYDSYRLSTKEQRFLSLS HEDRIKTLLSRMEIGEIYRINENVAIFKIQVSKAR Run BLAST on NCBI transcript from alignment at scaffold_445:155405..158755+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065800 ID=TCONS_00065800|Name=TCONS_00065800|organism=Clytia hemisphaerica|type=transcript|length=3351bp|location=Sequence derived from alignment at scaffold_445:155405..158755+ (Clytia hemisphaerica) CGCGCCTGTTGGCATCAAAATTTCGTCTTTCATATATCATATTGTAGAAA
CATTTTTCGATGGCATTTCATCGGGCCATAACAAACGATGTGGATATCTT
CTGCAAGTACAAAGAACGAGGCTGTCTTTGGACTGGCTCCATAAATGATT
TTGAGGTGAGTGTTCTTTAAAGTTTAACAAATAATTAGATGGTTTTAGAT
ATTTGGCTTGTAGACACCTTCTATAGTCCCAGTAAAAACTCCaaccattt
ttttctaaatatggGCTTtcacgttgaaattctattgttttctcgCAAAG
TCCAAAAATGTGTTATGGTATACTAAAACATCTCGACTTGGGAAAATATT
CTGAGAAAATGTTTTGGAGCTTTGTTCAGAACGATAAAAGGAATCCAAAT
GGAAAGTATTTTTCACTTATTTTGGCGCTTGCAAACCAGTACTCTCTCGT
TAAATGTTTTAGAAGCATGAGAAATTGAATTGCCAATTTACAACAATCAA
GTGTTCCTTTCAACAATGTAACATGACATTTTGGAGAAAATTCCAACCCA
ACCATGAGAAGATTTGTCAATATCGTCTAGCTCATTGTGATTACTGCaaa
aataaagatcttcgttttGTTGACTTAGAGGTACGCGTGTTTTTCATCCA
TTTAATAATACTTAACTCTTAAGAGAAGTGCTTAAGAAAGAAATCGTAAT
CAAATCTAGCATCATTAAGTAAGATACGGCCTCGTGTGGTTTTTATTATG
TAACCCAAGGGAAAAACTAGGTCGCAAAATGTTTCGTCGGAAGAAACGCT
TGGCCATTTTTGTGTGAAAACTTTACGGCCATCCTTGAAGTTGACCAGAA
AAGATTTACATCGAGAAAAACTTTTCCCGTCACTTTTCCTCGACTCATTT
AAggtcttttggaaaaaaacagACGGATAACGAGAACAAATAAAATCTAC
AAATGATTTGGTATACTGTTTTATCTCATATGAGCTTTTTCAGTAAATAC
CGATATTGTTTTTTTGTAGGCTCATCATGTTGTATGCGATCAATTTCCAT
CGGGTTGTGGAAATATTGGCTGCCACGTTATCTTACCAAGGGAAAAGGTA
CATTTGATTCGTTCCTTGATtcaacgttctactattcgatacgctccaat
TCGTTGCCATTGAAAGTCACAGTCAattctcataaacgacgctctactat
tcgatacgttcCCTTATTcatcttgaaaatcgaattagagaacgtctATA
TCTATCAAAAAAGCAACTCTAACACGATAGGGAATTTGGGCCCCTTCCGG
AACGTCTATATCTATCAAACAAGCAACTCTAACACAATAGGGAATCGGGG
CCCCTTCCGGAACGTCTATATCTACCAAACAAGCAACTCTAACACAATAG
GGAATTTGGGCCCCTTCCGGAACGTCTATATCTATCAAACAAGCAACTCT
AACACAATAGGGAATTTGGGCCCCTTCCGAAACGTCTATATCTATCAAAC
AAGCAACTCTAACACAATAGGGAATTTGGGCCCCTTCCGGAACGTCGATA
TCTATCAAACAAGCAACTCTAACACGATAGGGAATTTGGGCCCCTTCCGG
AACGTCTATATCTACCAAACAAGCAACTCTAACACGATAGGGAATTTGGG
CCCCTTCCGGAACGTCTATATCTATCAAACAAGCAACTCTAACACGATAG
GGAATTTGGGCCCCTTCCGGAACGTCTATATCTACCAAACAAGCAACTCT
AACACGATAGGGAATTTGGGCCCCTTCCGGAACGTCTATATCTATCAAAC
AAGCAACTCTAACACGATAGGGAATTTGGGCCCCTTCCGGAACGTCTATA
TCTACCAAACAAGCAACTCTAACACGATAGGGAATTTGGGCCCCTTCCGG
AACGTCTATATCTATCAAACAAGCAACTCTAACACGATAGGGAATTCGGG
CCCCTTCCGGAACGTCTATATCTATCAAACAAGCAACTCTAACACGATAG
GGAATTTGGGCCCCTTCCGGAACGTCTATATCTATCAAACAAGCAACTCT
AACACGATAGGAAATTCGAGTTTACCCACGTTATTGAGACATTCTCAAAA
GTAAGATTTACGACTGAGATATTTATGATGGTTCTGAATAACTTTTTGGT
ACTTATCTCTTTTTAGATGATTAATTCCCATAGTAAGGAGTGTCCATTTG
AGGTCGTTCCTTGTAAGTTCCACGAGATTGGCTGCAAAATCACTGTAAGT
TGTGTTGTTTATTTAGTCTCTGAATATCAAATCATACCACTTAAAACATG
ACTGTACAGtctaataagcagatattcaataggaAAATATTGGTCATTGA
GATTTTATTAACCTGACTTAATGTATGATATTCAACAAGGCGAAACCTAT
TTATTTCTTTAACTCTTATCTCGCAGAAAGAATAAGTAAATTAGAAAAAC
GTAGTCACGGTAAATTGGAATCAACTTTGCCGATTGTAGTTGTCATAGAG
TGGGGTACCCAGTTGGCGTGAGTTTAAAAGATTCCCATCTATTCATTTCG
TCAGTATTTTTCTGGGACTTCTTTCGCATTCAAATGGTCAATACCGAAGG
GAGTACAAAACACTTATTTGATTTATTCAGTTTGATTTAGTTTTTTATCT
AAAAGATCCCCCCTTCGAGAAAACCTTATTTTCGCCCCATTTTAATGACG
TGACaaataagaatttgaataattttcatTAGGAGAATGcttttgacttc
aaattttcaccaaaggtGTAAATCAAGAAAAGGAAGTGatccacaaaaaa
aattaaaattctttgctgcaaaaaaaccgttttggttgaaaaaaacatta
gcttagaattttaaatttttttcgtgGATCGCTTCCAATGCGATCGTCCT
TCTTTCCCTTTTTAGATATTGAGATCAAAACAGAAGGAGCATGATGAGAC
CTTCCAATCACAACACATGGATTTATTACTCCACAACACTGTTCAATTGA
AAAAAGAGCTTCAAAGCTCGCAGCAAGAgcttgaaaaacaaaaagctcTT
AATGAGAAACAAAAAGGCCTGAATGAGAAAATTATCCATGCTTTGCAAGC
AACCAATGGATTCATAGACCTCACAGTAGCTCGTTTGTTTGAGTTGCTAA
GGAAACCGCGTTCTCCGTACGGGCTCTTTGAGGATGCTATTCAGTACGAC
AGCTATCGACTTAGTACAAAAGAACAACGGTTCTTATCTTTAAGTCATGA
AGACCGGATCAAAACCCTTCTTTCAAGAATGGAGATCGGTGAAATTTACC
GCATTAATGAGAATGTAGCGATATTTAAGATACAAGTATCGAAAGCACGT
G Coding sequence (CDS) from alignment at scaffold_445:155405..158755+ >TCONS_00065800 ID=TCONS_00065800|Name=TCONS_00065800|organism=Clytia hemisphaerica|type=CDS|length=4275bp|location=Sequence derived from alignment at scaffold_445:155405..158755+ (Clytia hemisphaerica) ATGGCATTTCATCGGGCCATAACAAACGATGTGGATATCTTCTGCAAGTA CAAAGAACGAGGCTGTCTTTGGACTGGCTCCATAAATGATTTTGAGAAGC ATGAGAAATTGAATTGCCAATTTACAACAATCAAGTGTTCCTTTCAACAA TGTAACATGACATTTTGGAGAAAATTCCAACCCAACCATGAGAAGATTTG TCAATATCGTCTAGCTCATTGTGATTACTGCaaaaataaagatcttcgtt ttGTTGACTTAGAGGCTCATCATGTTGTATGCGATCAATTTCCATCGGGT TGTGGAAATATTGGCTGCCACGTTATCTTACCAAGGGAAAAGATGATTAA TTCCCATAGTAAGGAGTGTCCATTTGAGGTCGTTCCTTGTAAGTTCCACG AGATTGGCTGCAAAATCACTATATTGAGATCAAAACAGAAGGAGCATGAT GAGACCTTCCAATCACAACACATGGATTTATTACTCCACAACACTGTTCA ATTGAAAAAAGAGCTTCAAAGCTCGCAGCAAGAgcttgaaaaacaaaaag ctcTTAATGAGAAACAAAAAGGCCTGAATGAGAAAATTATCCATGCTTTG CAAGCAACCAATGGATTCATAGACCTCACAGTAGCTCGTTTGTTTGAGTT GCTAAGGAAACCGCGTTCTCCGTACGGGCTCTTTGAGGATGCTATTCAGT ACGACAGCTATCGACTTAGTACAAAAGAACAACGGTTCTTATCTTTAAGT CATGAAGACCGGATCAAAACCCTTCTTTCAAGAATGGAGATCGGTGAAAT TTACCGCATTAATGAGAATGTAGCGATATTTAAGATACAAGTATCGAAAG CACGTATGGCATTTCATCGGGCCATAACAAACGATGTGGATATCTTCTGC AAGTACAAAGAACGAGGCTGTCTTTGGACTGGCTCCATAAATGATTTTGA GAAGCATGAGAAATTGAATTGCCAATTTACAACAATCAAGTGTTCCTTTC AACAATGTAACATGACATTTTGGAGAAAATTCCAACCCAACCATGAGAAG ATTTGTCAATATCGTCTAGCTCATTGTGATTACTGCaaaaataaagatct tcgttttGTTGACTTAGAGGCTCATCATGTTGTATGCGATCAATTTCCAT CGGGTTGTGGAAATATTGGCTGCCACGTTATCTTACCAAGGGAAAAGATG ATTAATTCCCATAGTAAGGAGTGTCCATTTGAGGTCGTTCCTTGTAAGTT CCACGAGATTGGCTGCAAAATCACTATATTGAGATCAAAACAGAAGGAGC ATGATGAGACCTTCCAATCACAACACATGGATTTATTACTCCACAACACT GTTCAATTGAAAAAAGAGCTTCAAAGCTCGCAGCAAGAgcttgaaaaaca aaaagctcTTAATGAGAAACAAAAAGGCCTGAATGAGAAAATTATCCATG CTTTGCAAGCAACCAATGGATTCATAGACCTCACAGTAGCTCGTTTGTTT GAGTTGCTAAGGAAACCGCGTTCTCCGTACGGGCTCTTTGAGGATGCTAT TCAGTACGACAGCTATCGACTTAGTACAAAAGAACAACGGTTCTTATCTT TAAGTCATGAAGACCGGATCAAAACCCTTCTTTCAAGAATGGAGATCGGT GAAATTTACCGCATTAATGAGAATGTAGCGATATTTAAGATACAAGTATC GAAAGCACGTATGGCATTTCATCGGGCCATAACAAACGATGTGGATATCT TCTGCAAGTACAAAGAACGAGGCTGTCTTTGGACTGGCTCCATAAATGAT TTTGAGAAGCATGAGAAATTGAATTGCCAATTTACAACAATCAAGTGTTC CTTTCAACAATGTAACATGACATTTTGGAGAAAATTCCAACCCAACCATG AGAAGATTTGTCAATATCGTCTAGCTCATTGTGATTACTGCaaaaataaa gatcttcgttttGTTGACTTAGAGGCTCATCATGTTGTATGCGATCAATT TCCATCGGGTTGTGGAAATATTGGCTGCCACGTTATCTTACCAAGGGAAA AGATGATTAATTCCCATAGTAAGGAGTGTCCATTTGAGGTCGTTCCTTGT AAGTTCCACGAGATTGGCTGCAAAATCACTATATTGAGATCAAAACAGAA GGAGCATGATGAGACCTTCCAATCACAACACATGGATTTATTACTCCACA ACACTGTTCAATTGAAAAAAGAGCTTCAAAGCTCGCAGCAAGAgcttgaa aaacaaaaagctcTTAATGAGAAACAAAAAGGCCTGAATGAGAAAATTAT CCATGCTTTGCAAGCAACCAATGGATTCATAGACCTCACAGTAGCTCGTT TGTTTGAGTTGCTAAGGAAACCGCGTTCTCCGTACGGGCTCTTTGAGGAT GCTATTCAGTACGACAGCTATCGACTTAGTACAAAAGAACAACGGTTCTT ATCTTTAAGTCATGAAGACCGGATCAAAACCCTTCTTTCAAGAATGGAGA TCGGTGAAATTTACCGCATTAATGAGAATGTAGCGATATTTAAGATACAA GTATCGAAAGCACGTATGGCATTTCATCGGGCCATAACAAACGATGTGGA TATCTTCTGCAAGTACAAAGAACGAGGCTGTCTTTGGACTGGCTCCATAA ATGATTTTGAGAAGCATGAGAAATTGAATTGCCAATTTACAACAATCAAG TGTTCCTTTCAACAATGTAACATGACATTTTGGAGAAAATTCCAACCCAA CCATGAGAAGATTTGTCAATATCGTCTAGCTCATTGTGATTACTGCaaaa ataaagatcttcgttttGTTGACTTAGAGGCTCATCATGTTGTATGCGAT CAATTTCCATCGGGTTGTGGAAATATTGGCTGCCACGTTATCTTACCAAG GGAAAAGATGATTAATTCCCATAGTAAGGAGTGTCCATTTGAGGTCGTTC CTTGTAAGTTCCACGAGATTGGCTGCAAAATCACTATATTGAGATCAAAA CAGAAGGAGCATGATGAGACCTTCCAATCACAACACATGGATTTATTACT CCACAACACTGTTCAATTGAAAAAAGAGCTTCAAAGCTCGCAGCAAGAgc ttgaaaaacaaaaagctcTTAATGAGAAACAAAAAGGCCTGAATGAGAAA ATTATCCATGCTTTGCAAGCAACCAATGGATTCATAGACCTCACAGTAGC TCGTTTGTTTGAGTTGCTAAGGAAACCGCGTTCTCCGTACGGGCTCTTTG AGGATGCTATTCAGTACGACAGCTATCGACTTAGTACAAAAGAACAACGG TTCTTATCTTTAAGTCATGAAGACCGGATCAAAACCCTTCTTTCAAGAAT GGAGATCGGTGAAATTTACCGCATTAATGAGAATGTAGCGATATTTAAGA TACAAGTATCGAAAGCACGTATGGCATTTCATCGGGCCATAACAAACGAT GTGGATATCTTCTGCAAGTACAAAGAACGAGGCTGTCTTTGGACTGGCTC CATAAATGATTTTGAGAAGCATGAGAAATTGAATTGCCAATTTACAACAA TCAAGTGTTCCTTTCAACAATGTAACATGACATTTTGGAGAAAATTCCAA CCCAACCATGAGAAGATTTGTCAATATCGTCTAGCTCATTGTGATTACTG CaaaaataaagatcttcgttttGTTGACTTAGAGGCTCATCATGTTGTAT GCGATCAATTTCCATCGGGTTGTGGAAATATTGGCTGCCACGTTATCTTA CCAAGGGAAAAGATGATTAATTCCCATAGTAAGGAGTGTCCATTTGAGGT CGTTCCTTGTAAGTTCCACGAGATTGGCTGCAAAATCACTATATTGAGAT CAAAACAGAAGGAGCATGATGAGACCTTCCAATCACAACACATGGATTTA TTACTCCACAACACTGTTCAATTGAAAAAAGAGCTTCAAAGCTCGCAGCA AGAgcttgaaaaacaaaaagctcTTAATGAGAAACAAAAAGGCCTGAATG AGAAAATTATCCATGCTTTGCAAGCAACCAATGGATTCATAGACCTCACA GTAGCTCGTTTGTTTGAGTTGCTAAGGAAACCGCGTTCTCCGTACGGGCT CTTTGAGGATGCTATTCAGTACGACAGCTATCGACTTAGTACAAAAGAAC AACGGTTCTTATCTTTAAGTCATGAAGACCGGATCAAAACCCTTCTTTCA AGAATGGAGATCGGTGAAATTTACCGCATTAATGAGAATGTAGCGATATT TAAGATACAAGTATCGAAAGCACGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00065800-exon-scaffold_445-1491911889:155405..155559 | TCONS_00065800-exon-scaffold_445-1491911889:155405..155559 | Clytia hemisphaerica | exon |
TCONS_00065800-exon-scaffold_445-1510915933:155405..155559 | TCONS_00065800-exon-scaffold_445-1510915933:155405..155559 | Clytia hemisphaerica | exon |
TCONS_00065800-exon-scaffold_445-1575043694:155405..155559 | TCONS_00065800-exon-scaffold_445-1575043694:155405..155559 | Clytia hemisphaerica | exon |
TCONS_00065800-exon-scaffold_445-1491911889:155867..156034 | TCONS_00065800-exon-scaffold_445-1491911889:155867..156034 | Clytia hemisphaerica | exon |
TCONS_00065800-exon-scaffold_445-1510915933:155867..156034 | TCONS_00065800-exon-scaffold_445-1510915933:155867..156034 | Clytia hemisphaerica | exon |
TCONS_00065800-exon-scaffold_445-1575043694:155867..156034 | TCONS_00065800-exon-scaffold_445-1575043694:155867..156034 | Clytia hemisphaerica | exon |
TCONS_00065800-exon-scaffold_445-1491911889:156424..156501 | TCONS_00065800-exon-scaffold_445-1491911889:156424..156501 | Clytia hemisphaerica | exon |
TCONS_00065800-exon-scaffold_445-1510915933:156424..156501 | TCONS_00065800-exon-scaffold_445-1510915933:156424..156501 | Clytia hemisphaerica | exon |
TCONS_00065800-exon-scaffold_445-1575043694:156424..156501 | TCONS_00065800-exon-scaffold_445-1575043694:156424..156501 | Clytia hemisphaerica | exon |
TCONS_00065800-exon-scaffold_445-1491911889:157571..157648 | TCONS_00065800-exon-scaffold_445-1491911889:157571..157648 | Clytia hemisphaerica | exon |
TCONS_00065800-exon-scaffold_445-1510915933:157571..157648 | TCONS_00065800-exon-scaffold_445-1510915933:157571..157648 | Clytia hemisphaerica | exon |
TCONS_00065800-exon-scaffold_445-1575043694:157571..157648 | TCONS_00065800-exon-scaffold_445-1575043694:157571..157648 | Clytia hemisphaerica | exon |
TCONS_00065800-exon-scaffold_445-1491911889:158320..158755 | TCONS_00065800-exon-scaffold_445-1491911889:158320..158755 | Clytia hemisphaerica | exon |
TCONS_00065800-exon-scaffold_445-1510915933:158320..158755 | TCONS_00065800-exon-scaffold_445-1510915933:158320..158755 | Clytia hemisphaerica | exon |
TCONS_00065800-exon-scaffold_445-1575043694:158320..158755 | TCONS_00065800-exon-scaffold_445-1575043694:158320..158755 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_445 | supercontig | scaffold_445:155405..158755 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0008270 | zinc ion binding |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
|