TCONS_00065801 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065801
Unique NameTCONS_00065801
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length702

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065801 ID=TCONS_00065801|Name=TCONS_00065801|organism=Clytia hemisphaerica|type=transcript|length=702bp
AGAAACATTTTTCGATGGCATTTCATCGGGCCATAACAAACGATGTGGAT
ATCTTCTGCAAGTACAAAGAACGAGGCTGTCTTTGGACTGGCTCCATAAA
TGATTTTGAGGCTCATCATGTTGTATGCGATCAATTTCCATCGGGTTGTG
GAAATATTGGCTGCCACGTTATCTTACCAAGGGAAAAGATGATTAATTCC
CATAGTAAGGAGTGTCCATTTGAGGTCGTTCCTTGTAAGTTCCACGAGAT
TGGCTGCAAAATCACTATATTGAGATCAAAACAGAAGGAGCATGATGAGA
CCTTCCAATCACAACACATGGATTTATTACTCCACAACACTGTTCAATTG
AAAAAAGAGCTTCAAAGCTCGCAGCAAGAgcttgaaaaacaaaaagctcT
TAATGAGAAACAAAAAGGCCTGAATGAGAAAATTATCCATGCTTTGCAAG
CAACCAATGGATTCATAGACCTCACAGTAGCTCGTTTGTTTGAGTTGCTA
AGGAAACCGCGTTCTCCGTACGGGCTCTTTGAGGATGCTATTCAGTACGA
CAGCTATCGACTTAGTACAAAAGAACAACGGTTCTTATCTTTAAGTCATG
AAGACCGGATCAAAACCCTTCTTTCAAGAATGGAGATCGGTGAAATTTAC
CGCATTAATGAGAATGTAGCGATATTTAAGATACAAGTATCGAAAGCACG
TG
Run BLAST on NCBI

transcript from alignment at scaffold_445:155450..158755+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065801 ID=TCONS_00065801|Name=TCONS_00065801|organism=Clytia hemisphaerica|type=transcript|length=3306bp|location=Sequence derived from alignment at scaffold_445:155450..158755+ (Clytia hemisphaerica)
AGAAACATTTTTCGATGGCATTTCATCGGGCCATAACAAACGATGTGGAT
ATCTTCTGCAAGTACAAAGAACGAGGCTGTCTTTGGACTGGCTCCATAAA
TGATTTTGAGGTGAGTGTTCTTTAAAGTTTAACAAATAATTAGATGGTTT
TAGATATTTGGCTTGTAGACACCTTCTATAGTCCCAGTAAAAACTCCaac
catttttttctaaatatggGCTTtcacgttgaaattctattgttttctcg
CAAAGTCCAAAAATGTGTTATGGTATACTAAAACATCTCGACTTGGGAAA
ATATTCTGAGAAAATGTTTTGGAGCTTTGTTCAGAACGATAAAAGGAATC
CAAATGGAAAGTATTTTTCACTTATTTTGGCGCTTGCAAACCAGTACTCT
CTCGTTAAATGTTTTAGAAGCATGAGAAATTGAATTGCCAATTTACAACA
ATCAAGTGTTCCTTTCAACAATGTAACATGACATTTTGGAGAAAATTCCA
ACCCAACCATGAGAAGATTTGTCAATATCGTCTAGCTCATTGTGATTACT
GCaaaaataaagatcttcgttttGTTGACTTAGAGGTACGCGTGTTTTTC
ATCCATTTAATAATACTTAACTCTTAAGAGAAGTGCTTAAGAAAGAAATC
GTAATCAAATCTAGCATCATTAAGTAAGATACGGCCTCGTGTGGTTTTTA
TTATGTAACCCAAGGGAAAAACTAGGTCGCAAAATGTTTCGTCGGAAGAA
ACGCTTGGCCATTTTTGTGTGAAAACTTTACGGCCATCCTTGAAGTTGAC
CAGAAAAGATTTACATCGAGAAAAACTTTTCCCGTCACTTTTCCTCGACT
CATTTAAggtcttttggaaaaaaacagACGGATAACGAGAACAAATAAAA
TCTACAAATGATTTGGTATACTGTTTTATCTCATATGAGCTTTTTCAGTA
AATACCGATATTGTTTTTTTGTAGGCTCATCATGTTGTATGCGATCAATT
TCCATCGGGTTGTGGAAATATTGGCTGCCACGTTATCTTACCAAGGGAAA
AGGTACATTTGATTCGTTCCTTGATtcaacgttctactattcgatacgct
ccaatTCGTTGCCATTGAAAGTCACAGTCAattctcataaacgacgctct
actattcgatacgttcCCTTATTcatcttgaaaatcgaattagagaacgt
ctATATCTATCAAAAAAGCAACTCTAACACGATAGGGAATTTGGGCCCCT
TCCGGAACGTCTATATCTATCAAACAAGCAACTCTAACACAATAGGGAAT
CGGGGCCCCTTCCGGAACGTCTATATCTACCAAACAAGCAACTCTAACAC
AATAGGGAATTTGGGCCCCTTCCGGAACGTCTATATCTATCAAACAAGCA
ACTCTAACACAATAGGGAATTTGGGCCCCTTCCGAAACGTCTATATCTAT
CAAACAAGCAACTCTAACACAATAGGGAATTTGGGCCCCTTCCGGAACGT
CGATATCTATCAAACAAGCAACTCTAACACGATAGGGAATTTGGGCCCCT
TCCGGAACGTCTATATCTACCAAACAAGCAACTCTAACACGATAGGGAAT
TTGGGCCCCTTCCGGAACGTCTATATCTATCAAACAAGCAACTCTAACAC
GATAGGGAATTTGGGCCCCTTCCGGAACGTCTATATCTACCAAACAAGCA
ACTCTAACACGATAGGGAATTTGGGCCCCTTCCGGAACGTCTATATCTAT
CAAACAAGCAACTCTAACACGATAGGGAATTTGGGCCCCTTCCGGAACGT
CTATATCTACCAAACAAGCAACTCTAACACGATAGGGAATTTGGGCCCCT
TCCGGAACGTCTATATCTATCAAACAAGCAACTCTAACACGATAGGGAAT
TCGGGCCCCTTCCGGAACGTCTATATCTATCAAACAAGCAACTCTAACAC
GATAGGGAATTTGGGCCCCTTCCGGAACGTCTATATCTATCAAACAAGCA
ACTCTAACACGATAGGAAATTCGAGTTTACCCACGTTATTGAGACATTCT
CAAAAGTAAGATTTACGACTGAGATATTTATGATGGTTCTGAATAACTTT
TTGGTACTTATCTCTTTTTAGATGATTAATTCCCATAGTAAGGAGTGTCC
ATTTGAGGTCGTTCCTTGTAAGTTCCACGAGATTGGCTGCAAAATCACTG
TAAGTTGTGTTGTTTATTTAGTCTCTGAATATCAAATCATACCACTTAAA
ACATGACTGTACAGtctaataagcagatattcaataggaAAATATTGGTC
ATTGAGATTTTATTAACCTGACTTAATGTATGATATTCAACAAGGCGAAA
CCTATTTATTTCTTTAACTCTTATCTCGCAGAAAGAATAAGTAAATTAGA
AAAACGTAGTCACGGTAAATTGGAATCAACTTTGCCGATTGTAGTTGTCA
TAGAGTGGGGTACCCAGTTGGCGTGAGTTTAAAAGATTCCCATCTATTCA
TTTCGTCAGTATTTTTCTGGGACTTCTTTCGCATTCAAATGGTCAATACC
GAAGGGAGTACAAAACACTTATTTGATTTATTCAGTTTGATTTAGTTTTT
TATCTAAAAGATCCCCCCTTCGAGAAAACCTTATTTTCGCCCCATTTTAA
TGACGTGACaaataagaatttgaataattttcatTAGGAGAATGcttttg
acttcaaattttcaccaaaggtGTAAATCAAGAAAAGGAAGTGatccaca
aaaaaaattaaaattctttgctgcaaaaaaaccgttttggttgaaaaaaa
cattagcttagaattttaaatttttttcgtgGATCGCTTCCAATGCGATC
GTCCTTCTTTCCCTTTTTAGATATTGAGATCAAAACAGAAGGAGCATGAT
GAGACCTTCCAATCACAACACATGGATTTATTACTCCACAACACTGTTCA
ATTGAAAAAAGAGCTTCAAAGCTCGCAGCAAGAgcttgaaaaacaaaaag
ctcTTAATGAGAAACAAAAAGGCCTGAATGAGAAAATTATCCATGCTTTG
CAAGCAACCAATGGATTCATAGACCTCACAGTAGCTCGTTTGTTTGAGTT
GCTAAGGAAACCGCGTTCTCCGTACGGGCTCTTTGAGGATGCTATTCAGT
ACGACAGCTATCGACTTAGTACAAAAGAACAACGGTTCTTATCTTTAAGT
CATGAAGACCGGATCAAAACCCTTCTTTCAAGAATGGAGATCGGTGAAAT
TTACCGCATTAATGAGAATGTAGCGATATTTAAGATACAAGTATCGAAAG
CACGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041227XLOC_041227Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065801-exon-scaffold_445-1491911889:155450..155559TCONS_00065801-exon-scaffold_445-1491911889:155450..155559Clytia hemisphaericaexon
TCONS_00065801-exon-scaffold_445-1510915933:155450..155559TCONS_00065801-exon-scaffold_445-1510915933:155450..155559Clytia hemisphaericaexon
TCONS_00065801-exon-scaffold_445-1575043694:155450..155559TCONS_00065801-exon-scaffold_445-1575043694:155450..155559Clytia hemisphaericaexon
TCONS_00065801-exon-scaffold_445-1491911889:156424..156501TCONS_00065801-exon-scaffold_445-1491911889:156424..156501Clytia hemisphaericaexon
TCONS_00065801-exon-scaffold_445-1510915933:156424..156501TCONS_00065801-exon-scaffold_445-1510915933:156424..156501Clytia hemisphaericaexon
TCONS_00065801-exon-scaffold_445-1575043694:156424..156501TCONS_00065801-exon-scaffold_445-1575043694:156424..156501Clytia hemisphaericaexon
TCONS_00065801-exon-scaffold_445-1491911889:157571..157648TCONS_00065801-exon-scaffold_445-1491911889:157571..157648Clytia hemisphaericaexon
TCONS_00065801-exon-scaffold_445-1510915933:157571..157648TCONS_00065801-exon-scaffold_445-1510915933:157571..157648Clytia hemisphaericaexon
TCONS_00065801-exon-scaffold_445-1575043694:157571..157648TCONS_00065801-exon-scaffold_445-1575043694:157571..157648Clytia hemisphaericaexon
TCONS_00065801-exon-scaffold_445-1491911889:158320..158755TCONS_00065801-exon-scaffold_445-1491911889:158320..158755Clytia hemisphaericaexon
TCONS_00065801-exon-scaffold_445-1510915933:158320..158755TCONS_00065801-exon-scaffold_445-1510915933:158320..158755Clytia hemisphaericaexon
TCONS_00065801-exon-scaffold_445-1575043694:158320..158755TCONS_00065801-exon-scaffold_445-1575043694:158320..158755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_445supercontigscaffold_445:155450..158755 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.24444	0.0797156	0	0.153374	0	0.465204	0.025908	0.276831	0	0.242335	0.317945	0	0	0	0.509281	0	0	0	0	0	0	0	0	0	0.301586	0	0	0.0859629
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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