TCONS_00065834 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065834
Unique NameTCONS_00065834
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065834 ID=TCONS_00065834|Name=TCONS_00065834|organism=Clytia hemisphaerica|type=transcript|length=801bp
caGAGATAAATAATAAAGTGCAAACAAGTAATGACAACAACAGAAAACCA
TAATAAAGCAGATGGCGTCAAATTCAGTGAAATTATTCCTTTAATGCAAC
AAGTACATCGCTCTAATGGCATGTTTGTACCAAATGTTGGAATCCCTGCT
GCCATGAAACAGAAAGAAGAAGTTGTTGTGGAAAGAATGATGGAGCATTG
TGGTTTCAAGACTGGAATGGCTTGTGTTTTAGGATATGCACTTGGTGGTG
CGTTTGGTTTGTTTACAGCTGGTCTTGACTCCAGTATGCCGACCAATGTC
ACTGGCCAACATGAACAAACTGCTAAAGAAATTGTCAAAGATATGAAATC
TAGAGCTGGCTCTTATGCTAGGAACTTTGCCGTCGTAGGAGCCATGTTTT
CGGCCACTGAGTGCCTGATTGAATCTTATCGTGGTAAAACGACACTTTCA
AACGGAACAATTTCAGGTTGTATTACAGGTGGAATGCTGGGATTTCGTGC
GGGTCCGCAAGCAGCCGCTTTTGGCTGTGCGGGTTTCGCAGCTTTTTCTA
CAGCCATTGATTATTATTTTCGCCATTGAGTGTTGTTTTTTCTATGCTGA
ATTTAATGGATCGATCTCCTCAACTACTCCCCTGTTACGCGGGTTTATGT
AAAGTGTAGATTATTGATTGGTGCCAAGATGAGCCATCCTGTGTGAATAA
AATTTCACTGAAACTATGTATAAAATTATATAGAAGATATGAGTTTTATA
TCATATAGTTTTGATAATAATAACTATGACCTTTCAAATACATATCTCCG
G
Run BLAST on NCBI

protein sequence of TCONS_00065834-protein

>TCONS_00065834-protein ID=TCONS_00065834-protein|Name=TCONS_00065834-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MTTTENHNKADGVKFSEIIPLMQQVHRSNGMFVPNVGIPAAMKQKEEVVV
ERMMEHCGFKTGMACVLGYALGGAFGLFTAGLDSSMPTNVTGQHEQTAKE
IVKDMKSRAGSYARNFAVVGAMFSATECLIESYRGKTTLSNGTISGCITG
GMLGFRAGPQAAAFGCAGFAAFSTAIDYYFRH
Run BLAST on NCBI

transcript from alignment at scaffold_446:33539..36052-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065834 ID=TCONS_00065834|Name=TCONS_00065834|organism=Clytia hemisphaerica|type=transcript|length=2514bp|location=Sequence derived from alignment at scaffold_446:33539..36052- (Clytia hemisphaerica)
CAGAGATAAATAATAAAGTGCAAACAAGTAATGACAACAACAGAAAACCA
TAATAAAGCAGATGGCGTCAAATTCAGTGAAATTATTCCTTTAATGCAAC
AAGTACATCGCTCTAATGGCATGTTTGTACCAAATGTTGGAATCCCTGCT
GCCATGAAACAGAAAGAAGAAGTTGTTGTGGAAAGAATGATGGAGCATTG
TGGTTTCAAGACTGGAATGGCTTGTGTTTTAGGTATGTGTGAGTTTCCTG
AGTTTAATATACTGATCTACGAGGTTACAGGTCTTGTTGAGTTGAGTTAA
ATGTAACTCAAATTTATTTTAATTGTTAAAAGTTTTTCAAGACTTTCTTC
ATATTTTCGTTCTAAAAGAGGATTTGATTTGAAGTCTTATGCAATGTATT
TTCATTAAATTATCAAGTCAGTTTCGAACAACAAAGTTTCGATAACTTTC
GACTTCTGGTGGACTCGAACTACCTAAAATACCCCCCGTCCCCTTTGTGG
TTCGAGTTACGGAAAGTCCAGAGAATATATAAAATAAGATTGTAATTTTT
AATTGATTTAGTCTGATACTGAAATTGGATCCCTTTATTTTCAATCGGAT
GAAGTGTGTTAGCGGTTAGCTGTTTATGACAAAACCAACAAATTACCTCA
TGAGTGTTTGTAAGAATGTAATGCCTTCTTTAGGCCCTCAGTGTTTTTTT
TAGTAGTCCAATACATCTAATTGAATTTTTTTTTTAATACTTTATCTTAA
TATCAAATCACATCTATCACATAGGATATGCACTTGGTGGTGCGTTTGGT
TTGTTTACAGCTGGTCTTGACTCCAGTATGCCGACCAATGTCACTGGCCA
ACATGAACAAACTGCTAAAGAAATTGTCAAAGATATGAAATCTAGAGCTG
GCTCTTATGCTAGGAACTTTGCCGTCGTAGGAGCCATGTTTTCGGCCACT
GAGTGCCTGATTGAATCTTATCGTGGTAAAACGACACTTTCAAACGGAAC
AATTTCAGGTTGTATTACAGGTGGAATGCTGGGATTTCGTGCGGGTCCGC
AAGCAGCCGCTTTTGGCTGTGCGGGTTTCGCAGCTTTTTCTACAGCCATT
GATTATTATTTTCGCCATTGAGTGTTGTTTTTTCTATGCTGAATTTAATG
GATCGATCTCCTCAACTACTCCCCTGTTACGCGGGTTTATGTAAAGTGTA
GATTATTGATTGGTGCCAAGATGAGCCATCCTGTGTGACTAAAATTTCAC
TGAAGCTATGTATAAAATTATATAGAAGATATGAGTTTTATATCATATAG
TTTTGATAATAATAACTATGACCTTTCAAATACATATCTCCGGCCGCTTT
TTTCATATCACTTCAAAAACCGCACTAAACAAATATTTGTTTTTGATGGT
TGTATGATGACAATTTGANTGAGTTTAATATACTGATCTACGAGGTTACA
GGTCTTGTTGAGTTGAGTTAAATGTAACTCAAATTTATTTTAATTGTTAA
AAGTTTTTCAATACTTTCTTCATATTTTCGTTCTAAAAGAGGATTTGATT
TGAAGTCTTATGCAATGTATTTTCATTAAATTGTCAAGTCAGTTTCGAAC
AACAAAGTTTCGATAACTTTCGACTTCTGGTGGACTCGAACTACCTAAAA
TACCCCCCGTCCCCTTTGTGGTTCGAGTTACGGAAAGTCCAGAGAATATA
TAAAATAAGATTGTAATTTTTAATTGATTTAGTCTGATACTGAAATTGGA
TCCCTTTATTTTCAATCGGATGAAGTGTGTTAGCGGTTAGCTGTTTATGA
CAAAACCAACAAATTACCTCATGAGTGTTTGTAAGAATGTAATGCCTTCT
TTAGGCCCTCAGTGTTTTTTTTAGTAGTCCAATACATCTAATTGAATTTT
TTTTTTAATACTTTATCTTAATATCAAATCACATCTATCACATAGGATAT
GCACTTGGTGGTGCGTTTGGTTTGTTTACAGCTGGTCTTGACTCCAGTAT
GCCGACCAATGTCACTGGCCAACATGAACAAACTGCTAAAGAAATTGTCA
AAGATATGAAATCTAGAGCTGGCTCTTATGCTAGGAACTTTGCCGTCGTA
GGAGCCATGTTTTCGGCCACTGAGTGCCTGATTGAATCTTATCGTGGTAA
AACGACACTTTCAAACGGAACAATTTCAGGTTGTATTACAGGTGGAATGC
TGGGATTTCGTGCGGGTCCGCAAGCAGCCGCTTTTGGCTGTGCGGGTTTC
GCAGCTTTTTCTACAGCCATTGATTATTATTTTCGCCATTGAGTGTTGTT
TTTTCTATGCTGAATTTAATGGATCGATCTCCTCAACTACTCCCCTGTTA
CGCGGGTTTATGTAAAGTGTAGATTATTGATTGGTGCCAAGATGAGCCAT
CCTGTGTGAATAAAATTTCACTGAAACTATGTATAAAATTATATAGAAGA
TATGAGTTTTATATCATATAGTTTTGATAATAATAACTATGACCTTTCAA
ATACATATCTCCGG

Coding sequence (CDS) from alignment at scaffold_446:33539..36052-

>TCONS_00065834 ID=TCONS_00065834|Name=TCONS_00065834|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at scaffold_446:33539..36052- (Clytia hemisphaerica)
GATATGCACTTGGTGGTGCGTTTGGTTTGTTTACAGCTGGTCTTGACTCC
AGTATGCCGACCAATGTCACTGGCCAACATGAACAAACTGCTAAAGAAAT
TGTCAAAGATATGAAATCTAGAGCTGGCTCTTATGCTAGGAACTTTGCCG
TCGTAGGAGCCATGTTTTCGGCCACTGAGTGCCTGATTGAATCTTATCGT
GGTAAAACGACACTTTCAAACGGAACAATTTCAGGTTGTATTACAGGTGG
AATGCTGGGATTTCGTGCGGGTCCGCAAGCAGCCGCTTTTGGCTGTGCGG
GTTTCGCAGCTTTTTCTACAGCCATTGATTATTATTTTCGCCATTGAATG
ACAACAACAGAAAACCATAATAAAGCAGATGGCGTCAAATTCAGTGAAAT
TATTCCTTTAATGCAACAAGTACATCGCTCTAATGGCATGTTTGTACCAA
ATGTTGGAATCCCTGCTGCCATGAAACAGAAAGAAGAAGTTGTTGTGGAA
AGAATGATGGAGCATTGTGGTTTCAAGACTGGAATGGCTTGTGTTTTAGG
ATATGCACTTGGTGGTGCGTTTGGTTTGTTTACAGCTGGTCTTGACTCCA
GTATGCCGACCAATGTCACTGGCCAACATGAACAAACTGCTAAAGAAATT
GTCAAAGATATGAAATCTAGAGCTGGCTCTTATGCTAGGAACTTTGCCGT
CGTAGGAGCCATGTTTTCGGCCACTGAGTGCCTGATTGAATCTTATCGTG
GTAAAACGACACTTTCAAACGGAACAATTTCAGGTTGTATTACAGGTGGA
ATGCTGGGATTTCGTGCGGGTCCGCAAGCAGCCGCTTTTGGCTGTGCGGG
TTTCGCAGCTTTTTCTACAGCCATTGATTATTATTTTCGCCATTGAATGA
CAACAACAGAAAACCATAATAAAGCAGATGGCGTCAAATTCAGTGAAATT
ATTCCTTTAATGCAACAAGTACATCGCTCTAATGGCATGTTTGTACCAAA
TGTTGGAATCCCTGCTGCCATGAAACAGAAAGAAGAAGTTGTTGTGGAAA
GAATGATGGAGCATTGTGGTTTCAAGACTGGAATGGCTTGTGTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041242XLOC_041242Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065834-proteinTCONS_00065834-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065834-exon-scaffold_446-1575043694:35821..36052TCONS_00065834-exon-scaffold_446-1575043694:35821..36052Clytia hemisphaericaexon
TCONS_00065834-exon-scaffold_446-1575043694:33539..34107TCONS_00065834-exon-scaffold_446-1575043694:33539..34107Clytia hemisphaericaexon
TCONS_00065834-exon-scaffold_446-1510915933:35821..36052TCONS_00065834-exon-scaffold_446-1510915933:35821..36052Clytia hemisphaericaexon
TCONS_00065834-exon-scaffold_446-1510915933:33539..34107TCONS_00065834-exon-scaffold_446-1510915933:33539..34107Clytia hemisphaericaexon
TCONS_00065834-exon-scaffold_446-1491911889:35821..36052TCONS_00065834-exon-scaffold_446-1491911889:35821..36052Clytia hemisphaericaexon
TCONS_00065834-exon-scaffold_446-1491911889:33539..34107TCONS_00065834-exon-scaffold_446-1491911889:33539..34107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_446supercontigscaffold_446:33539..36052 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
76.1328	60.3119	46.4368	39.2289	5.19413	5.34203	6.73274	12.7069	15.0679	13.2212	12.5235	1.94228	8.01148	5.2018	23.6046	18.9285	22.6523	30.5866	16.3512	15.8793	20.7655	19.1486	36.6069	24.1852	6.49371	8.15391	14.838	18.1574	15.3453	16.4282
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003397Tim17/Tim22/Tim23/PMP24
Blast
[Close]
BLAST of TCONS_00065834 vs. Swiss-Prot (Human)
Match: TIM22 (Mitochondrial import inner membrane translocase subunit Tim22 OS=Homo sapiens GN=TIMM22 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 3.118e-32
Identity = 86/146 (58.90%), Postives = 108/146 (73.97%), Query Frame = 1 
Query:  139 GIPAAMKQKEEVVVERMMEHCGFKTGMACVXXXXXXXXXXXXXXXXDSSMPTNVTGQHE-QTAKEIVKDMKSRAGSYARNFAVVGAMFSATECLIESYRGKTTLSNGTISGCITGGMLGFRXXXXXXXXXXXXXXXXXXXIDYYFR 573
            GIP+  K +E+ ++E+ ME C FK  +ACV G+ LGGAFG+FTAG+D+++  +    +   TAKE++KDM  R  SYA+NFA+VGAMFS TECLIESYRG +   N  ISGCITGG +GFRAG +A A GC GFAAFS AIDYY R
Sbjct:   49 GIPSPAKSEEQKMIEKAMESCAFKAALACVGGFVLGGAFGVFTAGIDTNVGFDPKDPYRTPTAKEVLKDMGQRGMSYAKNFAIVGAMFSCTECLIESYRGTSDWKNSVISGCITGGAIGFRAGLKAGAIGCGGFAAFSAAIDYYLR 194
The following BLAST results are available for this feature:
BLAST of TCONS_00065834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TIM223.118e-3258.90Mitochondrial import inner membrane translocase su... [more]
back to top