TCONS_00065835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065835
Unique NameTCONS_00065835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length793

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065835 ID=TCONS_00065835|Name=TCONS_00065835|organism=Clytia hemisphaerica|type=transcript|length=793bp
caGAGATAAATAATAAAGTGCAAACAAGTAATGACAACAACAGAAAACCA
TAATAAAGCAGATGGCGTCAAATTCAGTGAAATTATTCCTTTAATGCAAC
AAGTACATCGCTCTAATGGCATGTTTGTACCAAATGTTGGAATCCCTGCT
GCCATGAAACAGAAAGAAGAAGTTGTTGTGGAAAGAATGATGGAGCATTG
TGGTTTCAAGACTGGAATGGCTTGTGTTTTAGGATATGCACTTGGTGGTG
CGTTTGGTTTGTTTACAGCTGGTCTTGACTCCAGTATGCCGACCAATGTC
ACTGGCCAACATGAACAAACTGCTAAAGAAATTGTCAAAGATATGAAATC
TAGAGCTGGCTCTTATGCTAGGAACTTTGCCGTCGTAGGAGCCATGTTTT
CGGCCACTGAGTGCCTGATTGAATCTTATCGTGGTAAAACGACACTTTCA
AACGGAACAATTTCAGGTTGTATTACAGGTGGAATGCTGGGATTTCGTGC
GGGTCCGCAAGCAGCCGCTTTTGGCTGTGCGGGTTTCGCAGCTTTTTCTA
CAGCCATTGATTATTATTTTCGCCATTGAGTGTTGTTTTTTCTATGCTGA
ATTTAATGGATCGATCTCCTCAACTACTCCCCTGTTACGCGGGTTTATGT
AAAGTGTAGATTATTGATTGGTGCCAAGATGAGCCATCCTGTGTGACTAA
AATTTCACTGAAGCTATGTATAAAATTATATAGAAGATATGAGTTTTATA
TCATATAGTTTTGATAATAATAACTATGACCTTTCAAATACAT
Run BLAST on NCBI

transcript from alignment at scaffold_446:34718..36052-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065835 ID=TCONS_00065835|Name=TCONS_00065835|organism=Clytia hemisphaerica|type=transcript|length=1335bp|location=Sequence derived from alignment at scaffold_446:34718..36052- (Clytia hemisphaerica)
CAGAGATAAATAATAAAGTGCAAACAAGTAATGACAACAACAGAAAACCA
TAATAAAGCAGATGGCGTCAAATTCAGTGAAATTATTCCTTTAATGCAAC
AAGTACATCGCTCTAATGGCATGTTTGTACCAAATGTTGGAATCCCTGCT
GCCATGAAACAGAAAGAAGAAGTTGTTGTGGAAAGAATGATGGAGCATTG
TGGTTTCAAGACTGGAATGGCTTGTGTTTTAGGTATGTGTGAGTTTCCTG
AGTTTAATATACTGATCTACGAGGTTACAGGTCTTGTTGAGTTGAGTTAA
ATGTAACTCAAATTTATTTTAATTGTTAAAAGTTTTTCAAGACTTTCTTC
ATATTTTCGTTCTAAAAGAGGATTTGATTTGAAGTCTTATGCAATGTATT
TTCATTAAATTATCAAGTCAGTTTCGAACAACAAAGTTTCGATAACTTTC
GACTTCTGGTGGACTCGAACTACCTAAAATACCCCCCGTCCCCTTTGTGG
TTCGAGTTACGGAAAGTCCAGAGAATATATAAAATAAGATTGTAATTTTT
AATTGATTTAGTCTGATACTGAAATTGGATCCCTTTATTTTCAATCGGAT
GAAGTGTGTTAGCGGTTAGCTGTTTATGACAAAACCAACAAATTACCTCA
TGAGTGTTTGTAAGAATGTAATGCCTTCTTTAGGCCCTCAGTGTTTTTTT
TAGTAGTCCAATACATCTAATTGAATTTTTTTTTTAATACTTTATCTTAA
TATCAAATCACATCTATCACATAGGATATGCACTTGGTGGTGCGTTTGGT
TTGTTTACAGCTGGTCTTGACTCCAGTATGCCGACCAATGTCACTGGCCA
ACATGAACAAACTGCTAAAGAAATTGTCAAAGATATGAAATCTAGAGCTG
GCTCTTATGCTAGGAACTTTGCCGTCGTAGGAGCCATGTTTTCGGCCACT
GAGTGCCTGATTGAATCTTATCGTGGTAAAACGACACTTTCAAACGGAAC
AATTTCAGGTTGTATTACAGGTGGAATGCTGGGATTTCGTGCGGGTCCGC
AAGCAGCCGCTTTTGGCTGTGCGGGTTTCGCAGCTTTTTCTACAGCCATT
GATTATTATTTTCGCCATTGAGTGTTGTTTTTTCTATGCTGAATTTAATG
GATCGATCTCCTCAACTACTCCCCTGTTACGCGGGTTTATGTAAAGTGTA
GATTATTGATTGGTGCCAAGATGAGCCATCCTGTGTGACTAAAATTTCAC
TGAAGCTATGTATAAAATTATATAGAAGATATGAGTTTTATATCATATAG
TTTTGATAATAATAACTATGACCTTTCAAATACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041242XLOC_041242Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065835-exon-scaffold_446-1575043694:35821..36052TCONS_00065835-exon-scaffold_446-1575043694:35821..36052Clytia hemisphaericaexon
TCONS_00065835-exon-scaffold_446-1575043694:34718..35278TCONS_00065835-exon-scaffold_446-1575043694:34718..35278Clytia hemisphaericaexon
TCONS_00065835-exon-scaffold_446-1510915933:35821..36052TCONS_00065835-exon-scaffold_446-1510915933:35821..36052Clytia hemisphaericaexon
TCONS_00065835-exon-scaffold_446-1510915933:34718..35278TCONS_00065835-exon-scaffold_446-1510915933:34718..35278Clytia hemisphaericaexon
TCONS_00065835-exon-scaffold_446-1491911889:35821..36052TCONS_00065835-exon-scaffold_446-1491911889:35821..36052Clytia hemisphaericaexon
TCONS_00065835-exon-scaffold_446-1491911889:34718..35278TCONS_00065835-exon-scaffold_446-1491911889:34718..35278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_446supercontigscaffold_446:34718..36052 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
60.4828	84.0008	52.1133	53.9072	6.28603	5.4607	21.5265	19.1452	35.2526	25.9754	27.1877	40.5129	25.7766	26.7833	21.2957	27.0491	36.0495	32.4248	15.1973	8.16307	20.5352	23.2195	35.2624	35.3897	28.3775	27.2431	29.4408	27.5551	17.6861	18.3826
Blast
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BLAST of TCONS_00065835 vs. Swiss-Prot (Human)
Match: TIM22 (Mitochondrial import inner membrane translocase subunit Tim22 OS=Homo sapiens GN=TIMM22 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.913e-32
Identity = 86/146 (58.90%), Postives = 108/146 (73.97%), Query Frame = 1 
Query:  139 GIPAAMKQKEEVVVERMMEHCGFKTGMACVXXXXXXXXXXXXXXXXDSSMPTNVTGQHE-QTAKEIVKDMKSRAGSYARNFAVVGAMFSATECLIESYRGKTTLSNGTISGCITGGMLGFRXXXXXXXXXXXXXXXXXXXIDYYFR 573
            GIP+  K +E+ ++E+ ME C FK  +ACV G+ LGGAFG+FTAG+D+++  +    +   TAKE++KDM  R  SYA+NFA+VGAMFS TECLIESYRG +   N  ISGCITGG +GFRAG +A A GC GFAAFS AIDYY R
Sbjct:   49 GIPSPAKSEEQKMIEKAMESCAFKAALACVGGFVLGGAFGVFTAGIDTNVGFDPKDPYRTPTAKEVLKDMGQRGMSYAKNFAIVGAMFSCTECLIESYRGTSDWKNSVISGCITGGAIGFRAGLKAGAIGCGGFAAFSAAIDYYLR 194
The following BLAST results are available for this feature:
BLAST of TCONS_00065835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TIM222.913e-3258.90Mitochondrial import inner membrane translocase su... [more]
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