|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065855 ID=TCONS_00065855|Name=TCONS_00065855|organism=Clytia hemisphaerica|type=transcript|length=490bp
CGGGTGATAAAGATGAAATATTTATCGGTGATAAAGATGAAATATTTATC
AAAGataTCGGTGCATTGCAGCCATTGGATGTGGTAGCTACATATTCAGA
TGATGGCTTCTGGCTCTTTCTTTTCGAAAAGATTGCCACCATCGACGATC
CAATAGACGAAAGGCCATCAAAACGTCAAAAACAGAACAAAGACCAAGAA
GCAAATTATATACACGGGTACTGGTTCGAAGAAGTGGAAACAAATACTTA
TAGAAGGCTTGGGAAAAGAGTTAACGTGAGAGATACTACTCTGGTTCGCT
TCGGGGTAGATCTCGGAAACATTTTTGTCCttacaaaacataatttaaat
aataaatattaTGCAATCACCGATAAATTAAAAGAGTCTATCTTACGAGA
GATATCGTAAATCGTAAATGATAATCTTTCGCAAGAAGTTTTCTTTTAGT
TTTGAATGGGTTTTATAATATTGATGACGTTCATATTATT Run BLAST on NCBI protein sequence of TCONS_00065855-protein >TCONS_00065855-protein ID=TCONS_00065855-protein|Name=TCONS_00065855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
GDKDEIFIGDKDEIFIKDIGALQPLDVVATYSDDGFWLFLFEKIATIDDP
IDERPSKRQKQNKDQEANYIHGYWFEEVETNTYRRLGKRVNVRDTTLVRF
GVDLGNIFVLTKHNLNNKYYAITDKLKESILREIS Run BLAST on NCBI transcript from alignment at scaffold_447:189935..190537+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065855 ID=TCONS_00065855|Name=TCONS_00065855|organism=Clytia hemisphaerica|type=transcript|length=603bp|location=Sequence derived from alignment at scaffold_447:189935..190537+ (Clytia hemisphaerica)
CGGGTGATAAAGATGAAATATTTATCGGTGATAAAGATGAAATATTTATC
AAAGGTACAACAAATTTCTACTAGTCTTAGATAAAGATTTGCATtaacat
aactttttttaagtttatagCAGAATTTTGTAGCGggatttccatttttc
catttttatttttacagataTCGGTGCATTGCAGCCATTGGATGTGGTAG
CTACATATTCAGATGATGGCTTCTGGCTCTTTCTTTTCGAAAAGATTGCC
ACCATCGACGATCCAATAGACGAAAGGCCATCAAAACGTCAAAAACAGAA
CAAAGACCAAGAAGCAAATTATATACACGGGTACTGGTTCGAAGAAGTGG
AAACAAATACTTATAGAAGGCTTGGGAAAAGAGTTAACGTGAGAGATACT
ACTCTGGTTCGCTTCGGGGTAGATCTCGGAAACATTTTTGTCCttacaaa
acataatttaaataataaatattaTGCAATCACCGATAAATTAAAAGAGT
CTATCTTACGAGAGATATCGTAAATCGTAAATGATAATCTTTCGCAAGAA
GTTTTCTTTTAGTTTTGAATGGGTTTTATAATATTGATGACGTTCATATT
ATT Coding sequence (CDS) from alignment at scaffold_447:189935..190537+ >TCONS_00065855 ID=TCONS_00065855|Name=TCONS_00065855|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_447:189935..190537+ (Clytia hemisphaerica)
GGTGATAAAGATGAAATATTTATCGGTGATAAAGATGAAATATTTATCAA
AGataTCGGTGCATTGCAGCCATTGGATGTGGTAGCTACATATTCAGATG
ATGGCTTCTGGCTCTTTCTTTTCGAAAAGATTGCCACCATCGACGATCCA
ATAGACGAAAGGCCATCAAAACGTCAAAAACAGAACAAAGACCAAGAAGC
AAATTATATACACGGGTACTGGTTCGAAGAAGTGGAAACAAATACTTATA
GAAGGCTTGGGAAAAGAGTTAACGTGAGAGATACTACTCTGGTTCGCTTC
GGGGTAGATCTCGGAAACATTTTTGTCCttacaaaacataatttaaataa
taaatattaTGCAATCACCGATAAATTAAAAGAGTCTATCTTACGAGAGA
TATCGTAAGGTGATAAAGATGAAATATTTATCGGTGATAAAGATGAAATA
TTTATCAAAGataTCGGTGCATTGCAGCCATTGGATGTGGTAGCTACATA
TTCAGATGATGGCTTCTGGCTCTTTCTTTTCGAAAAGATTGCCACCATCG
ACGATCCAATAGACGAAAGGCCATCAAAACGTCAAAAACAGAACAAAGAC
CAAGAAGCAAATTATATACACGGGTACTGGTTCGAAGAAGTGGAAACAAA
TACTTATAGAAGGCTTGGGAAAAGAGTTAACGTGAGAGATACTACTCTGG
TTCGCTTCGGGGTAGATCTCGGAAACATTTTTGTCCttacaaaacataat
ttaaataataaatattaTGCAATCACCGATAAATTAAAAGAGTCTATCTT
ACGAGAGATATCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065855-exon-scaffold_447-1491911889:189935..189988 | TCONS_00065855-exon-scaffold_447-1491911889:189935..189988 | Clytia hemisphaerica | exon |
| TCONS_00065855-exon-scaffold_447-1510915933:189935..189988 | TCONS_00065855-exon-scaffold_447-1510915933:189935..189988 | Clytia hemisphaerica | exon |
| TCONS_00065855-exon-scaffold_447-1575043694:189935..189988 | TCONS_00065855-exon-scaffold_447-1575043694:189935..189988 | Clytia hemisphaerica | exon |
| TCONS_00065855-exon-scaffold_447-1491911889:190102..190537 | TCONS_00065855-exon-scaffold_447-1491911889:190102..190537 | Clytia hemisphaerica | exon |
| TCONS_00065855-exon-scaffold_447-1510915933:190102..190537 | TCONS_00065855-exon-scaffold_447-1510915933:190102..190537 | Clytia hemisphaerica | exon |
| TCONS_00065855-exon-scaffold_447-1575043694:190102..190537 | TCONS_00065855-exon-scaffold_447-1575043694:190102..190537 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_447 | supercontig | scaffold_447:189935..190537 + |
Blast
The following BLAST results are available for this feature:
|
