TCONS_00065861 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065861
Unique NameTCONS_00065861
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1332

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065861 ID=TCONS_00065861|Name=TCONS_00065861|organism=Clytia hemisphaerica|type=transcript|length=1332bp
CAAAACCcatactttcactttcgttttgccGGAAAAATGGTGGATCCTCA
TcaagaaaatttacaaagacTGTGTAGAATTTGTGgggaaaatattctta
atgaTGGAGTTTTGGTGGATAGCAAATCCGAAGATATTTTGGAATGTTTC
TACCTTAAAACTAGAAAAGATGAGGATCGTAAACATCCAAAATATATATG
CCTCAAGTGCTGTGCCCAGCTGAATGCCATCAAAAAGCGGGGTTCTACGG
TAAAACATCAAGTCATAAATTGGCCCTTGCACTCTGATGATGGTTGTTGG
GTTTGCTCAAGAGCTGATACTTCACGAAATAGTCCAGGTCGCCCAAAGAA
GACCAAAAAGCAGGGTGGACGGCCATCAAAATCGCCAGTTCCCACGATAT
GGACACGTAACAACATACTTGCTTTGATCCAGCAGATTCCAGATTCTCTG
AAAGAAACAGACAACAACGATATTCCTTTGACTTCCTTTCTTCAAGATGA
CTTCACAGATTTGGTTAAGTGTCCAGTTTGTCAAAAACTCTTTGATAAAC
CAGTTTTGGTATCATCATGTCAGCACGTAGTATGTTTGATGTGTCTACTG
AGTCACATTGAAGGTCATGGACTTGAAAAATGCAAATGTCCATGTCAATC
ATGTACTTCATTGGTCTCCCCATCAGGTGTCATATTTTCTCAACAAACAA
TTGATATCATAAACAGATTAAAACCAGCCACATCAACTACTGAAATCAAA
CTGAAGGATGTATTCTCGTTAACTACCGGTGATAAGGTTCCACGAGATTA
TGAAGAAGCTGCAGTACACATAATTAAAACCAAACTATCCCAATCATGTG
ACAAGTCAATATCATTCAACACTGATGGGTCAAGGGTGGATGAGGGAAAG
CAAAATAACATTTGAATCGGAACGCAAACAGAGAGAGATTATGCACACAA
TAGTAGCTGCTGTAGTGATTTGCAAGCTAGCCCCTTTCCAATTTCCAAAA
AGATGCAAGAAGACTGGGAATATTTTAAAAGGCAAATATGAACAATTGGA
AGCTGCATGGGCATACATTGATGACCTGAAAGGACACTTGTTTGCATACC
TTGAATCTCTTGTAAGTACATCATTATTCGTCGAGAACCAACAATAAAAG
ACGAGCTTCACATAAAAATTGGAGGTGACCATGGTGGTGGTTCCTTCAAA
TTCTCCTACCAATGCTGCAATACTGATTGTCCTAACAGCAGAAAGAATAC
AATCGTATTCAATACTTTTGAGGCGAAGGACTATCGTGTAAACATCAAAT
TATCAATGGATCGTTACAAAGATACAATAGAT
Run BLAST on NCBI

protein sequence of TCONS_00065861-protein

>TCONS_00065861-protein ID=TCONS_00065861-protein|Name=TCONS_00065861-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
QNPYFHFRFAGKMVDPHQENLQRLCRICGENILNDGVLVDSKSEDILECF
YLKTRKDEDRKHPKYICLKCCAQLNAIKKRGSTVKHQVINWPLHSDDGCW
VCSRADTSRNSPGRPKKTKKQGGRPSKSPVPTIWTRNNILALIQQIPDSL
KETDNNDIPLTSFLQDDFTDLVKCPVCQKLFDKPVLVSSCQHVVCLMCLL
SHIEGHGLEKCKCPCQSCTSLVSPSGVIFSQQTIDIINRLKPATSTTEIK
LKDVFSLTTGDKVPRDYEEAAVHIIKTKLSQSCDKSISFNTDGSRVDEGK
QNNI
Run BLAST on NCBI

transcript from alignment at scaffold_447:357108..359361-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065861 ID=TCONS_00065861|Name=TCONS_00065861|organism=Clytia hemisphaerica|type=transcript|length=2254bp|location=Sequence derived from alignment at scaffold_447:357108..359361- (Clytia hemisphaerica)
CAAAACCCATACTTTCACTTTCGTTTTGCCGGAAAAATGGTGGATCCTCA
TCAAGAAAATTTACAAAGACTGTGTAGAATTTGTGGGGAAAATATTCTTA
ATGATGGAGTTTTGGTGGATAGCAAATCCGAAGATATTTTGGAATGTTTC
TACCTTAAAACTAGAAAAGATGAGGATCGTAAACATCCAAAATATATATG
CCTCAAGTGCTGTGCCCAGCTGAATGCCATCAAAAAGCGGGGTTCTACGG
TAAAACATCAAGTCATAAATTGGCCCTTGCACTCTGATGATGGTTGTTGG
GTTTGCTCAAGAGCTGATACTTCACGAAATAGTCCAGGTCGCCCAAAGAA
GACCAAAAAGCAGGGTGGACGGCCATCAAAATCGCCAGTTCCCACGATAT
GGACACGTAACAACATACTTGCTTTGATCCAGCAGATTCCAGATTCTCTG
AAAGAAACAGACAACAACGATATTCCTTTGACTTCCTTTCTTCAAGATGA
CTTCACAGATTTGGTTAAGTGTCCAGTTTGTCAAAAACTCTTTGATAAAC
CAGTTTTGGTATCATCATGTCAGCACGTAGTATGTTTGATGTGTCTACTG
AGTCACATTGAAGGTCATGGACTTGAAAAATGCAAATGTCCATGTCAATC
ATGTACTTCATTGGTCTCCCCATCAGGTGTCATATTTTCTCAACAAACAA
TTGATATCATAAACAGATTAAAACCAGCCACATCAACTACTGAAATCAAA
CTGAAGGATGTATTCTCGTTAACTACCGGTGATAAGGTTCCACGAGATTA
TGAAGAAGCTGCAGTACACATAATTAAAACCAAACTATCCCAATCATGTG
ACAAGTCAATATCATTCAACACTGATGGGTCAAGGGTAAGCAATCTAAAA
AAGAGAATGTGTTTGATAATTTAAGTTCTATTGATTGCAAAATTTTTGTC
ATGCCATGACATAAATGAGGACAAAATTTCAAGCTTATTAAGATAAAGTC
AAAAAATTTATTCAATGTGGATTGTTGTATAATATAGATTATTGTTTTCT
TTTTAAGCCTCTTGTTCTTGTATCAACCCGGTAGCAATCAAGAAGAATGT
TTGTCGTCGTGCAATCCAGTTTGGAAATGCAGCAATTAAAACTTTACTGA
GTCTTGTCAGCAATGGAGACAGCACAAATCAGACAGCACATTTTGTCAAT
TCGTTAACGTTATTTGAACAAAAAGAGATCATTGGTAACAGAGTTTTTGA
TGCAAAAACAATTGTTGCTATGAAGGCTGATTTAGAAATACCATGGGCAA
CACTGAGGAAATTAGCAAGGTTACAGAATTTCCCAGTTTATTAGCATTAT
ATATCAGTAACATTAAACAACCAGGATAGAAATCTGTCAGTTTACTTTAG
CATATATACACATTATTTCAGTATCCCTGTTTTTAAAGTCATGTTTAGAA
CATAGAGCAGATTACCCCATGGGTGCATAAAGGTTTCAAATTGTTGAATT
GAAAAATTCTGGAAATATTTTCTCAATTTAACAATTAACTTTTCTATCTT
TTTTGCTTTTATACTGTAGGTGGATGAGGGAAAGCAAAATAACATTTGAA
TCGGAACGCAAACAGAGAGAGATTATGCACACAATAGTAGCTGCTGTAGT
GATTTGCAAGCTAGCCCCTTTCCAATTTCCAAAAAGATGCAAGAAGACTG
GGAATATTTTAAAAGGCAAATATGAACAATTGGAAGCTGCATGGGCATAC
ATTGATGACCTGAAAGGACACTTGTTTGCATACCTTGAATCTCTTGTAAG
GTATGTACACCNAGACTGGGAATATTTTAAAAGGCAAATATGAACAATTG
GAAGCAGCATAGGCATACATTGATGACCTGAAAGGACACTTGTTTGCATA
CCTTGAATCTCTTGTAAGGTATGTACACCTTGGCTGTACAAAAATATCAC
TTGTTTTACAAATACTAAAGTATAAAGATTTTAGCTAATTCTATTTCAAT
TTAATTTATATTTTTTATTTCCCTTTTCTTCCATACAGTACATCATTATT
CGTCGAGAACCAACAATAAAAGACGAGCTTCACATAAAAATTGGAGGTGA
CCATGGTGGTGGTTCCTTCAAATTCTCCTACCAATGCTGCAATACTGATT
GTCCTAACAGCAGAAAGAATACAATCGTATTCAATACTTTTGAGGCGAAG
GACTATCGTGTAAACATCAAATTATCAATGGATCGTTACAAAGATACAAT
AGAT

Coding sequence (CDS) from alignment at scaffold_447:357108..359361-

>TCONS_00065861 ID=TCONS_00065861|Name=TCONS_00065861|organism=Clytia hemisphaerica|type=CDS|length=1830bp|location=Sequence derived from alignment at scaffold_447:357108..359361- (Clytia hemisphaerica)
GTGGATGAGGGAAAGCAAAATAACATTTGACAAAACCCATACTTTCACTT
TCGTTTTGCCGGAAAAATGGTGGATCCTCATCAAGAAAATTTACAAAGAC
TGTGTAGAATTTGTGGGGAAAATATTCTTAATGATGGAGTTTTGGTGGAT
AGCAAATCCGAAGATATTTTGGAATGTTTCTACCTTAAAACTAGAAAAGA
TGAGGATCGTAAACATCCAAAATATATATGCCTCAAGTGCTGTGCCCAGC
TGAATGCCATCAAAAAGCGGGGTTCTACGGTAAAACATCAAGTCATAAAT
TGGCCCTTGCACTCTGATGATGGTTGTTGGGTTTGCTCAAGAGCTGATAC
TTCACGAAATAGTCCAGGTCGCCCAAAGAAGACCAAAAAGCAGGGTGGAC
GGCCATCAAAATCGCCAGTTCCCACGATATGGACACGTAACAACATACTT
GCTTTGATCCAGCAGATTCCAGATTCTCTGAAAGAAACAGACAACAACGA
TATTCCTTTGACTTCCTTTCTTCAAGATGACTTCACAGATTTGGTTAAGT
GTCCAGTTTGTCAAAAACTCTTTGATAAACCAGTTTTGGTATCATCATGT
CAGCACGTAGTATGTTTGATGTGTCTACTGAGTCACATTGAAGGTCATGG
ACTTGAAAAATGCAAATGTCCATGTCAATCATGTACTTCATTGGTCTCCC
CATCAGGTGTCATATTTTCTCAACAAACAATTGATATCATAAACAGATTA
AAACCAGCCACATCAACTACTGAAATCAAACTGAAGGATGTATTCTCGTT
AACTACCGGTGATAAGGTTCCACGAGATTATGAAGAAGCTGCAGTACACA
TAATTAAAACCAAACTATCCCAATCATGTGACAAGTCAATATCATTCAAC
ACTGATGGGTCAAGGGTGGATGAGGGAAAGCAAAATAACATTTGACAAAA
CCCATACTTTCACTTTCGTTTTGCCGGAAAAATGGTGGATCCTCATCAAG
AAAATTTACAAAGACTGTGTAGAATTTGTGGGGAAAATATTCTTAATGAT
GGAGTTTTGGTGGATAGCAAATCCGAAGATATTTTGGAATGTTTCTACCT
TAAAACTAGAAAAGATGAGGATCGTAAACATCCAAAATATATATGCCTCA
AGTGCTGTGCCCAGCTGAATGCCATCAAAAAGCGGGGTTCTACGGTAAAA
CATCAAGTCATAAATTGGCCCTTGCACTCTGATGATGGTTGTTGGGTTTG
CTCAAGAGCTGATACTTCACGAAATAGTCCAGGTCGCCCAAAGAAGACCA
AAAAGCAGGGTGGACGGCCATCAAAATCGCCAGTTCCCACGATATGGACA
CGTAACAACATACTTGCTTTGATCCAGCAGATTCCAGATTCTCTGAAAGA
AACAGACAACAACGATATTCCTTTGACTTCCTTTCTTCAAGATGACTTCA
CAGATTTGGTTAAGTGTCCAGTTTGTCAAAAACTCTTTGATAAACCAGTT
TTGGTATCATCATGTCAGCACGTAGTATGTTTGATGTGTCTACTGAGTCA
CATTGAAGGTCATGGACTTGAAAAATGCAAATGTCCATGTCAATCATGTA
CTTCATTGGTCTCCCCATCAGGTGTCATATTTTCTCAACAAACAATTGAT
ATCATAAACAGATTAAAACCAGCCACATCAACTACTGAAATCAAACTGAA
GGATGTATTCTCGTTAACTACCGGTGATAAGGTTCCACGAGATTATGAAG
AAGCTGCAGTACACATAATTAAAACCAAACTATCCCAATCATGTGACAAG
TCAATATCATTCAACACTGATGGGTCAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041259XLOC_041259Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065861-proteinTCONS_00065861-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065861-exon-scaffold_447-1575043694:358477..359361TCONS_00065861-exon-scaffold_447-1575043694:358477..359361Clytia hemisphaericaexon
TCONS_00065861-exon-scaffold_447-1575043694:357562..357792TCONS_00065861-exon-scaffold_447-1575043694:357562..357792Clytia hemisphaericaexon
TCONS_00065861-exon-scaffold_447-1575043694:357108..357323TCONS_00065861-exon-scaffold_447-1575043694:357108..357323Clytia hemisphaericaexon
TCONS_00065861-exon-scaffold_447-1510915933:358477..359361TCONS_00065861-exon-scaffold_447-1510915933:358477..359361Clytia hemisphaericaexon
TCONS_00065861-exon-scaffold_447-1510915933:357562..357792TCONS_00065861-exon-scaffold_447-1510915933:357562..357792Clytia hemisphaericaexon
TCONS_00065861-exon-scaffold_447-1510915933:357108..357323TCONS_00065861-exon-scaffold_447-1510915933:357108..357323Clytia hemisphaericaexon
TCONS_00065861-exon-scaffold_447-1491911889:358477..359361TCONS_00065861-exon-scaffold_447-1491911889:358477..359361Clytia hemisphaericaexon
TCONS_00065861-exon-scaffold_447-1491911889:357562..357792TCONS_00065861-exon-scaffold_447-1491911889:357562..357792Clytia hemisphaericaexon
TCONS_00065861-exon-scaffold_447-1491911889:357108..357323TCONS_00065861-exon-scaffold_447-1491911889:357108..357323Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_447supercontigscaffold_447:357108..359361 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.339952	0.47209	0.264427	0	0.44481	1.00998	1.66433	1.34637	0.689497	1.28605	1.27054	1.20541	1.19919	1.39648	0.126913	0.693044	0.330576	1.09386	0.599385	0.517635	0.420488	0.451455	0.104602	0.457523	0.579685	0.605435	0.636544	0.269486	0.239554	0.566903
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR001841Znf_RING
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065861 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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