TCONS_00065862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065862
Unique NameTCONS_00065862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065862 ID=TCONS_00065862|Name=TCONS_00065862|organism=Clytia hemisphaerica|type=transcript|length=2357bp
CTCCCTACTGCGTGGTAAAAAAATTTTTTTAAAGTGCGTCTGCAGTGCTC
TGCACGTGGTCGCGAGTCAATAATGGCGATTTTTCCATAATGGCGGACTT
GGAAAATAACAAATCACAGCAAAAGTCATGGGAAGCAACTTCCAAAGCTG
CAAAGTTGAAAATAGCTAACTCTACTGGTCTATAAACTTCAATTTACATA
AAACTATTTACATCTTCTTCATATAAGACAAATAAAAACAGTCGTCGGTT
ATTGTTCTTTTGATGTTGGCAATTGAATTTTTGTTGTTGTTCTTGTTATA
TTACCTTTACGTTACTTACTGAGACCTTACGTTACTTGCTTTTAACTCGG
TTCCTTATTAAGAATTTGTTGCACGGTGGACGGGCGTCCACCGTTAACAT
TAAGAGATAATATTTTTTTAGACTTATATTTTTATGGTGGACACCCGTCC
ACCGTGAAAAATTTTTTTTCCCTAAAAAACAAAATTTCTCAGCTGTGCCA
CAAAAAAATAATTAAGCAGATTTGAGCAGGGCACAGACTGTAATTATGAT
GTTGATATTCTCATAGCTATATTTTTTACAGGCTATGTCCTGGTTTTTAT
TGTGTTATTTTTTAGCATTTGGAGTGTATATATTTGGAGTTATTTATTTC
CTTGCAAGAATACTATAAAAAAGCAAACCTGTTACTATACTTAGTACTTG
GTTCTTTGTCCACCATTCTTGATGATAAGGTCTATCCGCTTGTCCATACT
CTCAATGGTCTTGTTGATCGGTTCAACCGGGAACTCCATCATAGTCTTCT
GAACGCGGGCCACAAATTCTTCTTCTGTCTCCGAAGTGATCTTTCCATCA
AGGGCCTGACGCTTTAATTCCTTCCCAACAAGATGAAAAAAGTTTTCTAT
CGGGTTCACATCCGGGGACCGAGCAGGGATGCAGAAGAGATGGCCACCCA
GACGACCAATTGCTCTTGTGGCGCGCTTTGAATTCTGAACGGGGCACCCA
TCCTGCAGGATCCTTTTTGCCTTCGGGTTGTTGCTCAATGAAAATGCCAG
AGGGAAATCACGCCTCACCATCCTTGCAAATTTATATCCATTCAGTCGGA
AATCAAATTCTTTGCACAACACCACCCCTTTGTTGTATGAAATTGCGACC
ATAAACTTCTTCTGGGTTGTTCCCTCCTTGCTGCCCTTGGTGGTACACCC
AAAACTCAACCCTTCATTTTTCGTTCTCCACTCTCTCGCTCTCGGGGTCC
TTGCCTGATCCAGTGGGTTCTTTTTGTAAACAAATCCTGTCGCGTCTAAG
TAAAAACTGATACCTTCCTTCCAAAAGTTTGGTCCCAATCCCAACCGCTT
AACTTTCTTTGCAAATTTGAGCCTCTTTACCAGGTCTTCTTTCTTCAAAA
CTCCCTTTCTTCTAGTGTTGCGGTAGCCATAGCCCATTCTTCTGAGGTAA
CGTCGAAACGTTGAATTGCTGGTCTTCTGTCCTGTGCTATGCGCTTGCAG
TTTTATTGAAGAGAAAGCCCCCTCACTGCTTCGCAGGACAGAGATCTGTC
TCTTCACCACCCGCAAGTCACGGTCATCCAACAAGCGCGGTCTGCCTTTG
TTCCATACACGTTTGTCATGAGGATCTGTTCCATCAAGCGGCTGTTTCGC
ATGTTTGTACAGCGTTGACACAGGAATATTTGCAAAGCCAGGGAATCTCT
TCTTGTCATTAATGATCGTCTTGACTTTGACACCACCATACTGCACCAGT
GCCCTCAGTTGACAAGATTGCCAATATGATAATCTATCTGGCATCTTTGT
TACTTTACTTACTTGTGTTACTTGTGTAGGTATATATTTGTATTGATTTA
TTATCTATTTTTGATATCTAGCTAAAAATAAAGAAAAAATAATTAAATGT
GTAAAGCGCAACAAAAATAAGCCGATGAACTTAACACGATAAATTCACAT
TTCCAAAACAAAGTCTTAAACATCTAAAAATGAGTCATTTATTATTCACC
CTGACCAGCCAGTAAAGCAATAAAGACCATAAGTAATGCTAGAAGACACC
TCATACAAATCCAAGCACTCATAGATACCTATATTAAAAAAAAAAATTTT
CAAAATTAGTTCAAAAAATTTCTAAGTCCTTGAAAAATAAAGACAATTTC
GTTCATAATATAATGAGAATTTTTGATTTTTACCACAGCTTGAACCTGTC
TTCCCCCTTCCCCCCTTACTACAATGCTGAAGGAAGACTCTGCCAGTCCT
TTTAGGCTTGAATCTTCATATCCAGCATTGTagtaaggggggagggggta
ttttcgataaaattgactgtaattttgaaaattctcataATTAATGCACA
AAGTTGA
Run BLAST on NCBI

transcript from alignment at scaffold_447:415496..419524-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065862 ID=TCONS_00065862|Name=TCONS_00065862|organism=Clytia hemisphaerica|type=transcript|length=4029bp|location=Sequence derived from alignment at scaffold_447:415496..419524- (Clytia hemisphaerica)
CTCCCTACTGCGTGGTAAAAAAATTTTTTTAAAGTGCGTCTGCAGTGCTC
TGCACGTGGTCGCGAGTCAATAATGGCGATTTTTCCATAATGGCGGACTT
GGAAAATAACAAATCACAGCAAAAGTCATGGGAAGCAACTTCCAAAGCTG
CAAAGTTGAAAATAGCTAACTCTACTGGTCTATAAACTTCAATTTACATA
AAACTATTTACATCTTCTTCATATAAGACAAATAAAAACAGGTCTATAGC
CTTTTATACACAATATTTACATTTTAGTGACAAAAAAACTAACAAATAAC
AGAATGGAAGACATATCCTTTGATGATGATAACTTATCCTTGACACTGGA
AGACTTGACACCTCCTAATTTCCTGAATGAAGAATTTGATACAGATGAAG
CCCCTCTGTCACCATGTGTAGTGACACCGAGCACACCGAGCACACCAATT
AACCCCACTGTTTTAAGCGATTCAGAATGTGATCTGCCCGTTCCTGCAAA
GATTCAAAAGAAGGAAGGAATAAAGCGCAAAGAAGATAAGAAAAAGCCAG
ACGGGTCTCGGTCAACCTATTTGGTAACCTATTCTCGAGCCGATGTGGTT
AAAGTCAGGGGTAGACAACATTTTGGGGAAATTGTCGCAGAACAATTTAA
TCGTAATGATGATGTCGTTGAGTATTGGGCCTGTTCGGCTGAGATTCACC
GTGCCGTAGGTATTCATTACCACTTGTCGATAAAATTATCCAAAAAGAGA
CGTTTCGCAGAAGTGCGAAAGAACTTGAAAAAGATACACAACATTGATGT
TGATTTTAAGTTTTTCCCACAATATCATGATGCCTATACATACATGAGGA
AGTATGATCCACATTTTGTCGTCAGTGAGAACCACCTTGTTTTGGATAAT
CCTCCGCGTACATTGCAAGCTTCCCGGGCAGTCTCCAAACAAACAGCACC
TAGCTCCCCGTCGTCTGGGCCATCCAAAAAAAAGAAAGCAAAGCCGTACC
GGCCACCAAATCTTACAACACGACAGGTTTGCAAAATTGTGCGAGAAAAT
GACATTGCAAGTGAAGATGAGCTGTACGCCTTTGCCGATGAGCAGGCAAG
TGTTGGGAAAGTAGATCTCCTAGACTACCTCTACGACAAGCCAAGTCTAA
AGCACCATGCCGACATTCTCGCTACCGTTGAAAGAGTGAGAACTTCACGC
AAAAGGTTGGAGAGGAAAAAGAAAAGCCCATTGCAAATTCTTGAAGAGGC
GAAAGATTTGCCGTGCGAAGTAAACCCTGTCACCAATGCCCCTTGTGACG
GGCTCTTCTTGACATCTGCACTTGAAGTTCTTACGCACAATAATATAACC
CGAAAAAGATTTTCAGACTTAGTTTTGAATACTTTGAAGTTCGGTCGAGG
AAAGGGAAGGAACCTAATGATTATCGGAAAGACCAATTGTGCCAAGACTT
TCATTCTGAGCCCTCTAACCAAAATTTACCAGTGTTTCATGACCCCGTCT
AAAGGAAATTATAACTGGGTCCACGCGCCATCAAAGGAAATAATTTTTCT
CAACGACCTACGATACGAGAAAGATGGTGATGACAAAGTAATGCCGTGGA
GTACATTTCTCAATTTTCTTGATGGCTCAACGATCAACGTCAGCAGGCCA
AAAAACAATTACCCCTCTGACTTAGAGTGGTCGGCTAAGCAACCCGTGTT
TGCTACAGCAGAAAAACCGATTGTCCGAGTTGTTGGTGGGCAGTTCATTT
CTGGGGAGACTGATCAGATGAACGAGCGATGGGAATTTTTAACCTTTACC
TACCAATTCTTGAAAGAAAAAAACAACATTAACTACAACATTACCCCATG
TGGTGCCTGTTTCGCAAAACTCATCCTTGATGCATGAAAGGTACTTTCAG
AAATTTTGGTCAGTCGTCGGTTATTGTTCTTTTGATGTTGGCAATTGAAT
TTTTGTTGTTGTTCTTGTTATATTACCTTTACGTTACTTACTGAGACCTT
ACGTTACTTGCTTTTAACTCGGTTCCTTATTAAGAATTTGTTGCACGGTG
GACGGGCGTCCACCGTTAACATTAAGAGATAATATTTTTTTAGACTTATA
TTTTTATGGTGGACACCCGTCCACCGTGAAAAATTTTTTTTCCCTAAAAA
ACAAAATTTCTCAGCTGTGCCACAAAAAAATAATTAAGCAGATTTGAGCA
GGGCACAGACTGTAATTATGATGTTGATATTCTCATAGCTATATTTTTTA
CAGGCTATGTCCTGGTTTTTATTGTGTTATTTTTTAGCATTTGGAGTGTA
TATATTTGGAGTTATTTATTTCCTTGCAAGAATACTATAAAAAAGCAAAC
CTGTTACTATACTTAGTACTTGGTTCTTTGTCCACCATTCTTGATGATAA
GGTCTATCCGCTTGTCCATACTCTCAATGGTCTTGTTGATCGGTTCAACC
GGGAACTCCATCATAGTCTTCTGAACGCGGGCCACAAATTCTTCTTCTGT
CTCCGAAGTGATCTTTCCATCAAGGGCCTGACGCTTTAATTCCTTCCCAA
CAAGATGAAAAAAGTTTTCTATCGGGTTCACATCCGGGGACCGAGCAGGG
ATGCAGAAGAGATGGCCACCCAGACGACCAATTGCTCTTGTGGCGCGCTT
TGAATTCTGAACGGGGCACCCATCCTGCAGGATCCTTTTTGCCTTCGGGT
TGTTGCTCAATGAAAATGCCAGAGGGAAATCACGCCTCACCATCCTTGCA
AATTTATATCCATTCAGTCGGAAATCAAATTCTTTGCACAACACCACCCC
TTTGTTGTATGAAATTGCGACCATAAACTTCTTCTGGGTTGTTCCCTCCT
TGCTGCCCTTGGTGGTACACCCAAAACTCAACCCTTCATTTTTCGTTCTC
CACTCTCTCGCTCTCGGGGTCCTTGCCTGATCCAGTGGGTTCTTTTTGTA
AACAAATCCTGTCGCGTCTAAGTAAAAACTGATACCTTCCTTCCAAAAGT
TTGGTCCCAATCCCAACCGCTTAACTTTCTTTGCAAATTTGAGCCTCTTT
ACCAGGTCTTCTTTCTTCAAAACTCCCTTTCTTCTAGTGTTGCGGTAGCC
ATAGCCCATTCTTCTGAGGTAACGTCGAAACGTTGAATTGCTGGTCTTCT
GTCCTGTGCTATGCGCTTGCAGTTTTATTGAAGAGAAAGCCCCCTCACTG
CTTCGCAGGACAGAGATCTGTCTCTTCACCACCCGCAAGTCACGGTCATC
CAACAAGCGCGGTCTGCCTTTGTTCCATACACGTTTGTCATGAGGATCTG
TTCCATCAAGCGGCTGTTTCGCATGTTTGTACAGCGTTGACACAGGAATA
TTTGCAAAGCCAGGGAATCTCTTCTTGTCATTAATGATCGTCTTGACTTT
GACACCACCATACTGCACCAGTGCCCTCAGTTGACAAGATTGCCAATATG
ATAATCTATCTGGCATCTTTGTTACTTTACTTACTTGTGTTACTTGTGTA
GGTATATATTTGTATTGATTTATTATCTATTTTTGATATCTAGCTAAAAA
TAAAGAAAAAATAATTAAATGTGTAAAGCGCAACAAAAATAAGCCGATGA
ACTTAACACGATAAATTCACATTTCCAAAACAAAGTCTTAAACATCTAAA
AATGAGTCATTTATTATTCACCCTGACCAGCCAGTAAAGCAATAAAGACC
ATAAGTAATGCTAGAAGACACCTCATACAAATCCAAGCACTCATAGATAC
CTATATTAAAAAAAAAAATTTTCAAAATTAGTTCAAAAAATTTCTAAGTC
CTTGAAAAATAAAGACAATTTCGTTCATAATATAATGAGAATTTTTGATT
TTTACCACAGCTTGAACCTGTCTTCCCCCTTCCCCCCTTACTACAATGCT
GAAGGAAGACTCTGCCAGTCCTTTTAGGCTTGAATCTTCATATCCAGCAT
TGTAGTAAGGGGGGAGGGGGTATTTTCGATAAAATTGACTGTAATTTTGA
AAATTCTCATAATTAATGCACAAAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041260XLOC_041260Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065862-exon-scaffold_447-1575043694:419284..419524TCONS_00065862-exon-scaffold_447-1575043694:419284..419524Clytia hemisphaericaexon
TCONS_00065862-exon-scaffold_447-1575043694:415496..417611TCONS_00065862-exon-scaffold_447-1575043694:415496..417611Clytia hemisphaericaexon
TCONS_00065862-exon-scaffold_447-1510915933:419284..419524TCONS_00065862-exon-scaffold_447-1510915933:419284..419524Clytia hemisphaericaexon
TCONS_00065862-exon-scaffold_447-1510915933:415496..417611TCONS_00065862-exon-scaffold_447-1510915933:415496..417611Clytia hemisphaericaexon
TCONS_00065862-exon-scaffold_447-1491911889:419284..419524TCONS_00065862-exon-scaffold_447-1491911889:419284..419524Clytia hemisphaericaexon
TCONS_00065862-exon-scaffold_447-1491911889:415496..417611TCONS_00065862-exon-scaffold_447-1491911889:415496..417611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_447supercontigscaffold_447:415496..419524 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0165166	0.0805316	0.056103	0.219552	0.490019	0.299215	0.0637042	0.0795189	0.111346	0.10344	0.117135	0.0659999	0.0659082	0	0.0281361	0	0.024798	0.0508342	0	0	0.0159692	0.0934707	0.0757506	0.0860854	0.372397	0.427314	0.181181	0.120851	0.0366644	0.149421
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR002492Transposase_Tc1-like
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO:0006313transposition, DNA-mediated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006313 transposition, DNA-mediated
molecular_function GO:0003677 DNA binding
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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