TCONS_00065882 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065882
Unique NameTCONS_00065882
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065882 ID=TCONS_00065882|Name=TCONS_00065882|organism=Clytia hemisphaerica|type=transcript|length=656bp
TAACTTTACAAAATACCTAAATAACTCTAAATAGGAAAAAAATTGAACTG
GTTAACAAAATATAAACTAAATATAAAGCGTATTTCGAGACTGTTATAGG
GGCTGAAAAATCTAAGTCTTTTTGTCTTTGAAAGTGAAAACAAACAAAAA
GCCACGTGAAATTGAACAAATAAGAACTCAAAGTATGAAAATCGAgaaga
gatttttgaaaatttaaacagGTCTGCTATTTTGCTACTTAATGAAAGAG
CtaagttaaaataattttttcttagatattttataaattttctatCTGAA
AGTCAATATTGTCTACAAATttgattgttttaatttttttaacaagaGCA
CTGATATGCATACGTAATGGTTTCAGGTCATCAAACCCCAACTTTTTACG
ACTCGTCAAGGAATTAGCTAGTTTTTTCATTTGATCATCAGTATACCAGG
TGTCTAAGACATACGGTTCATTGGCAAGAATAGTTTCACAAACATCAATC
ATAACAGCAATCAGAGCGTCATTTCGTTgtattgcaaaaaaatttgcagt
TTTTGTTTCTGGGTGGTACGAGACCAAAATACACGTGTGCGAATCTGTGC
AAGCCATTTGTAATTGGCATTGTATATAGTAGTTTCTACTTTTGTTTAGA
TTTTGT
Run BLAST on NCBI

protein sequence of TCONS_00065882-protein

>TCONS_00065882-protein ID=TCONS_00065882-protein|Name=TCONS_00065882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
QNLNKSRNYYIQCQLQMACTDSHTCILVSYHPETKTANFFAIQRNDALIA
VMIDVCETILANEPYVLDTWYTDDQMKKLANSLTSRKKLGFDDLKPLRMH
ISALVKKIKTIKFVDNIDFQIENL
Run BLAST on NCBI

transcript from alignment at scaffold_447:376500..377155

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065882 ID=TCONS_00065882|Name=TCONS_00065882|organism=Clytia hemisphaerica|type=transcript|length=656bp|location=Sequence derived from alignment at scaffold_447:376500..377155 (Clytia hemisphaerica)
ACAAAATCTAAACAAAAGTAGAAACTACTATATACAATGCCAATTACAAA
TGGCTTGCACAGATTCGCACACGTGTATTTTGGTCTCGTACCACCCAGAA
ACAAAAactgcaaatttttttgcaatacAACGAAATGACGCTCTGATTGC
TGTTATGATTGATGTTTGTGAAACTATTCTTGCCAATGAACCGTATGTCT
TAGACACCTGGTATACTGATGATCAAATGAAAAAACTAGCTAATTCCTTG
ACGAGTCGTAAAAAGTTGGGGTTTGATGACCTGAAACCATTACGTATGCA
TATCAGTGCtcttgttaaaaaaattaaaacaatcaaATTTGTAGACAATA
TTGACTTTCAGatagaaaatttataaaatatctaagaaaaaattatttta
acttaGCTCTTTCATTAAGTAGCAAAATAGCAGACctgtttaaattttca
aaaatctcttcTCGATTTTCATACTTTGAGTTCTTATTTGTTCAATTTCA
CGTGGCTTTTTGTTTGTTTTCACTTTCAAAGACAAAAAGACTTAGATTTT
TCAGCCCCTATAACAGTCTCGAAATACGCTTTATATTTAGTTTATATTTT
GTTAACCAGTTCAATTTTTTTCCTATTTAGAGTTATTTAGGTATTTTGTA
AAGTTA

Coding sequence (CDS) from alignment at scaffold_447:376500..377155

>TCONS_00065882 ID=TCONS_00065882|Name=TCONS_00065882|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_447:376500..377155 (Clytia hemisphaerica)
CAAAATCTAAACAAAAGTAGAAACTACTATATACAATGCCAATTACAAAT
GGCTTGCACAGATTCGCACACGTGTATTTTGGTCTCGTACCACCCAGAAA
CAAAAactgcaaatttttttgcaatacAACGAAATGACGCTCTGATTGCT
GTTATGATTGATGTTTGTGAAACTATTCTTGCCAATGAACCGTATGTCTT
AGACACCTGGTATACTGATGATCAAATGAAAAAACTAGCTAATTCCTTGA
CGAGTCGTAAAAAGTTGGGGTTTGATGACCTGAAACCATTACGTATGCAT
ATCAGTGCtcttgttaaaaaaattaaaacaatcaaATTTGTAGACAATAT
TGACTTTCAGatagaaaatttataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041280XLOC_041280Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065882-proteinTCONS_00065882-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065882-exon-scaffold_447-1491911889:376500..377155TCONS_00065882-exon-scaffold_447-1491911889:376500..377155Clytia hemisphaericaexon
TCONS_00065882-exon-scaffold_447-1510915933:376500..377155TCONS_00065882-exon-scaffold_447-1510915933:376500..377155Clytia hemisphaericaexon
TCONS_00065882-exon-scaffold_447-1575043694:376500..377155TCONS_00065882-exon-scaffold_447-1575043694:376500..377155Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_447supercontigscaffold_447:376500..377155 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.154794	0.449326	0.175838	1.39143	0.676631	2.55102	2.38823	0.735706	0.414223	0.160822	0.687167	0.580641	0.65782	0.450681	0.48365	0.417072	0.366416	1.18119	0.706301	0.997594	1.34748	0.182005	0.910078	0	0	2.72075	2.20678	2.73088	3.59011
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011604Exonuc_phg/RecB_C
IPR011335Restrct_endonuc-II-like
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0004518 nuclease activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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