TCONS_00065883 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065883
Unique NameTCONS_00065883
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length649

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065883 ID=TCONS_00065883|Name=TCONS_00065883|organism=Clytia hemisphaerica|type=transcript|length=649bp
CGCTGAGTGTACATTAAAAGGGCAGACACATGTTGTCCCGTCGCTCAGAG
CCTGTGAAAATTGTCTCAAGTATGACATAAAATATATTAAACGGGTAGTA
CTTGTTATAACCGTCGATTGCGAATCTGgtaataaactttgtttgaaacA
GCTTCAGCAAGGGATCACTGACAAATCTATTGATCCGTATCTTTTACTGC
TTTCACTTCTTCCAGACGTACCGCATGTACTTAAAACATGCAAGGCTATT
TTCGCAAATTGGTATCTACAATTGCTCAATGAACGTGGTTGCCTTTCATT
GTTTTATACTTTGAGAAACAGGGCTGATCCTGAAGTTCGAAAGCAAATCC
AATCTCATCTCAAAAGTAATGACTTTGTTCGCAACAGGGACCGTCAAAAT
CATTCAGCTGTTCTCGCTCTCTGTAATCCAGCTCTCCTGACATATATTGA
AAGTTTAGGTATGTTATTCCATTAGATCGAACCCAACACCTATAACTATT
GGTTTTTTTCCTTATTAAggacaacttttttcaaatcAGGACAGGTTTTT
TCGAAACATGTTGGAACtcttaagaaagttaaaaacatcgaaAGGCTTTT
GATATAAAACATATAGCAACAACCTTTTAATATACCAACTGCTACCGAC
Run BLAST on NCBI

transcript from alignment at scaffold_447:468011..468659

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065883 ID=TCONS_00065883|Name=TCONS_00065883|organism=Clytia hemisphaerica|type=transcript|length=649bp|location=Sequence derived from alignment at scaffold_447:468011..468659 (Clytia hemisphaerica)
GTCGGTAGCAGTTGGTATATTAAAAGGTTGTTGCTATATGTTTTATATCA
AAAGCCTttcgatgtttttaactttcttaagaGTTCCAACATGTTTCGAA
AAAACCTGTCCTgatttgaaaaaagttgtccTTAATAAGGAAAAAAACCA
ATAGTTATAGGTGTTGGGTTCGATCTAATGGAATAACATACCTAAACTTT
CAATATATGTCAGGAGAGCTGGATTACAGAGAGCGAGAACAGCTGAATGA
TTTTGACGGTCCCTGTTGCGAACAAAGTCATTACTTTTGAGATGAGATTG
GATTTGCTTTCGAACTTCAGGATCAGCCCTGTTTCTCAAAGTATAAAACA
ATGAAAGGCAACCACGTTCATTGAGCAATTGTAGATACCAATTTGCGAAA
ATAGCCTTGCATGTTTTAAGTACATGCGGTACGTCTGGAAGAAGTGAAAG
CAGTAAAAGATACGGATCAATAGATTTGTCAGTGATCCCTTGCTGAAGCT
gtttcaaacaaagtttattacCAGATTCGCAATCGACGGTTATAACAAGT
ACTACCCGTTTAATATATTTTATGTCATACTTGAGACAATTTTCACAGGC
TCTGAGCGACGGGACAACATGTGTCTGCCCTTTTAATGTACACTCAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041281XLOC_041281Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065883-exon-scaffold_447-1491911889:468011..468659TCONS_00065883-exon-scaffold_447-1491911889:468011..468659Clytia hemisphaericaexon
TCONS_00065883-exon-scaffold_447-1510915933:468011..468659TCONS_00065883-exon-scaffold_447-1510915933:468011..468659Clytia hemisphaericaexon
TCONS_00065883-exon-scaffold_447-1575043694:468011..468659TCONS_00065883-exon-scaffold_447-1575043694:468011..468659Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_447supercontigscaffold_447:468011..468659 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.64505	0.707653	1.00424	0.446589	1.41356	1.46072	0.725649	0.970491	0.611518	0.757463	0.816902	0.4296	0.91163	1.00243	0.732561	0.884419	0.302648	0.186123	0.257138	0.269077	0.155918	0	0.1849	0	1.03884	3.09047	0.331684	0.235988	0.626461	0.364722
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065883 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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