TCONS_00065885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065885
Unique NameTCONS_00065885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length214

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065885 ID=TCONS_00065885|Name=TCONS_00065885|organism=Clytia hemisphaerica|type=transcript|length=214bp
TTTGTTGAATGTTAATTTGCTATCCAAGATCACTCCTAGATATTTAGCTG
ATTTTACCAATTCGAGATTGTAGCCATGGATTGAATAtgtttattcagtt
tttttgtgtttatttGTAAATCGCAGGACTTTACTTTTGTCAGCATTAAA
CTCCATGGACCAGTCCTTTTCCCATTGGGTAAGGTGGTTCATGTCATTTT
GCAGATCTCTGGCA
Run BLAST on NCBI

transcript from alignment at scaffold_447:490628..490841

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065885 ID=TCONS_00065885|Name=TCONS_00065885|organism=Clytia hemisphaerica|type=transcript|length=214bp|location=Sequence derived from alignment at scaffold_447:490628..490841 (Clytia hemisphaerica)
TGCCAGAGATCTGCAAAATGACATGAACCACCTTACCCAATGGGAAAAGG
ACTGGTCCATGGAGTTTAATGCTGACAAAAGTAAAGTCCTGCGATTTACa
aataaacacaaaaaaactgaataaacaTATTCAATCCATGGCTACAATCT
CGAATTGGTAAAATCAGCTAAATATCTAGGAGTGATCTTGGATAGCAAAT
TAACATTCAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041283XLOC_041283Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065885-exon-scaffold_447-1491911889:490628..490841TCONS_00065885-exon-scaffold_447-1491911889:490628..490841Clytia hemisphaericaexon
TCONS_00065885-exon-scaffold_447-1510915933:490628..490841TCONS_00065885-exon-scaffold_447-1510915933:490628..490841Clytia hemisphaericaexon
TCONS_00065885-exon-scaffold_447-1575043694:490628..490841TCONS_00065885-exon-scaffold_447-1575043694:490628..490841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_447supercontigscaffold_447:490628..490841 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.7136	2.64619	0	4.50891	3.65944	2.89174	5.23314	3.26613	1.79159	0	0	0	3.60946	1.87423	0	0.826795	0	1.04397	0	4.52781	6.55915	0	0	0	4.37021	3.9003	1.86044	1.98551	1.50594	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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