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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065894 ID=TCONS_00065894|Name=TCONS_00065894|organism=Clytia hemisphaerica|type=transcript|length=568bp
CTGAATTGgaaatcttagaaaaaaatacTGAAAGACGATTGAATTAAAAT
AACTATTAATCCAATCAGCATTCATTGGTTAAAACCATATGCCTGGTGGT
AGAGGTAGAGGGCGTGGCGCCCAAGCAGGAGGTGGAGCAGGGCGTAGAGG
CGTTGGTTTGAGAAATGGAATGACAGTATTGAATGtagcagaaaaaaatg
atgcAGCGAAGAGGTTGTCTCAACTTATGTCGAGAGGGAACTCACAAAGG
agAGAAGGTTTCTCCAAATTCAACaagatttatgaatttgatTACAACCT
TCTAAACTATAATTGTAAAATGGTTATGACGTCAGTATCAGGTCACTTGA
TGACAATGGATTTCAGTTCTGTTTATAGAAACTGGAAGAATATCGATCCA
GCACAATTATTCCAAGCACCCGTCTCTCGATTCGTGCCCGACAACTTCAT
TGATATAAAGAGGACGTTAGAGAGAGAGATCCGAAAAAGTCAAGTGTTGG
TGATTTGGACTGATGGTGACCGAGAAGGAGAAAATATCGGCTTCGAAATC
ATCGAATGTTGTCAAAAT Run BLAST on NCBI protein sequence of TCONS_00065894-protein >TCONS_00065894-protein ID=TCONS_00065894-protein|Name=TCONS_00065894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MPGGRGRGRGAQAGGGAGRRGVGLRNGMTVLNVAEKNDAAKRLSQLMSRG
NSQRREGFSKFNKIYEFDYNLLNYNCKMVMTSVSGHLMTMDFSSVYRNWK
NIDPAQLFQAPVSRFVPDNFIDIKRTLEREIRKSQVLVIWTDGDREGENI
GFEIIECCQN Run BLAST on NCBI transcript from alignment at scaffold_448:219331..225446+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065894 ID=TCONS_00065894|Name=TCONS_00065894|organism=Clytia hemisphaerica|type=transcript|length=6116bp|location=Sequence derived from alignment at scaffold_448:219331..225446+ (Clytia hemisphaerica)
CTGAATTGgaaatcttagaaaaaaatacTGAAAGACGATTGAATTAAAAT
AACTATTAATCCAATCAGCATTCATTGGTTAAAACCATATGCCTGGTGGT
AGAGGTAGAGGGCGTGGCGCCCAAGCAGGAGGTGGAGCAGGGCGTAGAGG
CGTTGGTTTGAGAAATGGAATGACAGTATTGAATGtagcagaaaaaaatg
atgcAGCGAAGAGGTTGTCTCAACTTATGTCGAGAGGGAACTCACAAAGG
GTAAGTCTCAAGTTATGTCGAGAGGGTAACATGTtcttttgattcttcaa
acTTCTGTAAGTACTGGTGTAGGAAGAATGACATTCATGATAGATATCTT
TAGGCCGGAGAGCATAAATAATGAATCAAGTTGATGAAAGGAtgtctatt
ttcaaaaattagacgTTACGATTTTTTCGATCTAATTGCCTTAAGATTTT
AATATCAAACTTTGGCGCCATTGGTAACATCGCTGCTGATTTTTAAGAGG
ATATTTCTGTCACCTTAGAACGTTTGTGTTAAATCAATTCTTTGATTGAC
TTTTAGTCCTTTTTGTAAACTATTAAAATCACCATCCAAAGCTCTTCCAG
GTTTTATCAGCTGCATCATTAAGACgagtttattcatttttagagAGAAG
GTTTCTCCAAATTCAACaagatttatgaatttgatTACAACCTTCTAAAC
TATGTAAGTAGTCAACGAATATCTGTCAAGTCTGCTGACTTTGAGTTACT
TTATTTACTCTCTGTTGTACAACAATCTCAAACCCGATTACCAGTCGACC
TGATTCTTAAAAAATCAACTCTAAATTGCgacattttcaaatgaaaacat
GAGCGAGACTTATCCTTACAACCACTCTTGCATTTCTAGAAATAGAAAAT
AGCTTTTTAATCCTTTGTAGAACTTGcacatttttccaatttcttgCTAA
TGTATTATACAGTGAGTATGAGCCATGTGCAGCAGTGgagtctttttaac
tcgaacctctatagctcgaatgtctccttaattaAAGATTCTTTGGTTGT
TTGACAAATGCCCCGAATTTCAACCTTGGTGACGGCTATATAAATGTGCA
CTAATTTTAATACGACTCAAGACTCAAAACTCaaaactcgaacaagtttt
atggtctcttcagttaacaatgccttataaaccttactctctataattct
gTGTTCTTTGAACTGCACACTTTTATTTCATAGAATTGTAAAATGGTTAT
GACGTCAGTATCAGGTCACTTGATGACAATGGATTTCAGTTCTGTTTATA
GAAACTGGTAAGTTCCATCACTCGATATTACCTTTCCAACAATTTCATAT
ACTGTATTGAAATCCGAAAGATTAAAAATCTCATATTGAGTTTTTTTGTG
GAAATATCAACCTATCACTTTTCGCAATTTTAGTTATCTTTCATTCAATA
GTGTCTTGTATGTTCTCTTCAACTCAATGCTCCTTAAAACCCTCGTAACC
CTTAGTGGTGCGAACGGCTTTTAATGGTTTTGATGAATAATATAAtgaac
tagccggtacccggcgtcgcacgccggtttagctgtttgctgaacgcatt
taaagtcctttgagatgttgggaaggtggcttaaataCGATGAACTCAAA
ATTAAAGGGatgaattctcttcaaagtttgactctatccctcccgggtga
cgtatcttttaaccatattttgaaaaagatttttatggcaaaaaagaaca
gaaaacagaaagggcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaa
ttagattttttttctcgcttcgctcgcgttatatttgccgtagttcttga
tgtttaggaaaactttgatgtcaagataagcggagtgaaataatagacac
tagccggtacccggcgtcgcacgccggtttagctgtttgctgaatgcatt
taaagtcctttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNaataaaagtcatcttttggaagaacaaaaacattgcgtt
agaaaacgaaagtagaaaacacagacaaacacacatacagactaccacta
ttaatatatagatatacACGGAAACGatgtcaaaatctattgtttatGAG
AAAGTCAATTCACGCTTCACGCTTTAATTGTTGATAGGTGTATTTGTGTA
ATGTTCTGCATTACTTTTGTACAGGAAGAATATCGATCCAGCACAATTAT
TCCAAGCACCCGTCTCTCGATTCGTGCCCGACAACTTCATTGATATAAAG
GTAAGAAAGCATGCTCTGTTGACAGGTAAGGAAAGTTGAACCCAAAAGGT
TGGTGAGATCTGCTCATAGAATAATGTTGGAGTCGCTGTTGAACGTTGGT
AAACCAATAAACTAGTGGAATGTTTCGGCAATAATTTTCTTCAGTCTAGG
GAcaatattgtttttttctaataaagcagtGCCAAATAGCATACCGTGGT
GAATTTAGAAATAggcattgatttttctgtttgaccgaaattcaatccca
tcatcctttgcGTTTATTACGCTTACACACTCAATCACAAAGAAGAAGTT
ATAACTTTCACGATTTTTGAATCAAGACAAAAAGGATTGTGGGGAATCTT
CATCCTGTCTtataagcaagaaaaagtgaaattctTCAGATTTTCGCCGC
ACTTAGAATGACAGATACAATGAAACGCTTTCTTTCTTCTAATGtggtat
atttttcaatatctggcgatatattttttactttagagtgtcggaagaaa
atttctacatggAGTGCCAAATAAACAATATNgaaagaaaatttctacat
ggagtgccaaataaaaaatatcCGACCTTAAGTGCTTTAGCTTGTCGGGA
GAAGATTTTTACATCAAGTGCTAgataaccactgacctttatatatccct
ggaccaagttactcaatcccggccaaccaaaaatctttgattggagtttt
ttttgaaattggtaccctaatggcggcactactcaatagcggtgaaaatg
catcgagagcgctagatctacttttcctagaatacttttgatgatgtagc
gctgttagacgttaatttttaatattgcaatggcttcttcttgggtacca
attccaaataaaactccaatcaaagatggtggatatagcttggtccaggg
atataggTGGTGTAGGTCGGTGTAGATAACCCAgtattttgctttgtttt
tcttataGAGGACGTTAGAGAGAGAGATCCGAAAAAGTCAAGTGTTGGTG
ATTTGGACTGATGGTGACCGAGAAGGAGAAAATATCGGCTTCGAAATCAT
CGAATGTTGTCAAAAT Coding sequence (CDS) from alignment at scaffold_448:219331..225446+ >TCONS_00065894 ID=TCONS_00065894|Name=TCONS_00065894|organism=Clytia hemisphaerica|type=CDS|length=2400bp|location=Sequence derived from alignment at scaffold_448:219331..225446+ (Clytia hemisphaerica)
ATGCCTGGTGGTAGAGGTAGAGGGCGTGGCGCCCAAGCAGGAGGTGGAGC
AGGGCGTAGAGGCGTTGGTTTGAGAAATGGAATGACAGTATTGAATGtag
cagaaaaaaatgatgcAGCGAAGAGGTTGTCTCAACTTATGTCGAGAGGG
AACTCACAAAGGagAGAAGGTTTCTCCAAATTCAACaagatttatgaatt
tgatTACAACCTTCTAAACTATAATTGTAAAATGGTTATGACGTCAGTAT
CAGGTCACTTGATGACAATGGATTTCAGTTCTGTTTATAGAAACTGGAAG
AATATCGATCCAGCACAATTATTCCAAGCACCCGTCTCTCGATTCGTGCC
CGACAACTTCATTGATATAAAGAGGACGTTAGAGAGAGAGATCCGAAAAA
GTCAAGTGTTGGTGATTTGGACTGATGGTGACCGAGAAGGAGAAAATATC
GGCTTCGAAATCATCGAATGTTGTCAAAATATGCCTGGTGGTAGAGGTAG
AGGGCGTGGCGCCCAAGCAGGAGGTGGAGCAGGGCGTAGAGGCGTTGGTT
TGAGAAATGGAATGACAGTATTGAATGtagcagaaaaaaatgatgcAGCG
AAGAGGTTGTCTCAACTTATGTCGAGAGGGAACTCACAAAGGagAGAAGG
TTTCTCCAAATTCAACaagatttatgaatttgatTACAACCTTCTAAACT
ATAATTGTAAAATGGTTATGACGTCAGTATCAGGTCACTTGATGACAATG
GATTTCAGTTCTGTTTATAGAAACTGGAAGAATATCGATCCAGCACAATT
ATTCCAAGCACCCGTCTCTCGATTCGTGCCCGACAACTTCATTGATATAA
AGAGGACGTTAGAGAGAGAGATCCGAAAAAGTCAAGTGTTGGTGATTTGG
ACTGATGGTGACCGAGAAGGAGAAAATATCGGCTTCGAAATCATCGAATG
TTGTCAAAATATGCCTGGTGGTAGAGGTAGAGGGCGTGGCGCCCAAGCAG
GAGGTGGAGCAGGGCGTAGAGGCGTTGGTTTGAGAAATGGAATGACAGTA
TTGAATGtagcagaaaaaaatgatgcAGCGAAGAGGTTGTCTCAACTTAT
GTCGAGAGGGAACTCACAAAGGagAGAAGGTTTCTCCAAATTCAACaaga
tttatgaatttgatTACAACCTTCTAAACTATAATTGTAAAATGGTTATG
ACGTCAGTATCAGGTCACTTGATGACAATGGATTTCAGTTCTGTTTATAG
AAACTGGAAGAATATCGATCCAGCACAATTATTCCAAGCACCCGTCTCTC
GATTCGTGCCCGACAACTTCATTGATATAAAGAGGACGTTAGAGAGAGAG
ATCCGAAAAAGTCAAGTGTTGGTGATTTGGACTGATGGTGACCGAGAAGG
AGAAAATATCGGCTTCGAAATCATCGAATGTTGTCAAAATATGCCTGGTG
GTAGAGGTAGAGGGCGTGGCGCCCAAGCAGGAGGTGGAGCAGGGCGTAGA
GGCGTTGGTTTGAGAAATGGAATGACAGTATTGAATGtagcagaaaaaaa
tgatgcAGCGAAGAGGTTGTCTCAACTTATGTCGAGAGGGAACTCACAAA
GGagAGAAGGTTTCTCCAAATTCAACaagatttatgaatttgatTACAAC
CTTCTAAACTATAATTGTAAAATGGTTATGACGTCAGTATCAGGTCACTT
GATGACAATGGATTTCAGTTCTGTTTATAGAAACTGGAAGAATATCGATC
CAGCACAATTATTCCAAGCACCCGTCTCTCGATTCGTGCCCGACAACTTC
ATTGATATAAAGAGGACGTTAGAGAGAGAGATCCGAAAAAGTCAAGTGTT
GGTGATTTGGACTGATGGTGACCGAGAAGGAGAAAATATCGGCTTCGAAA
TCATCGAATGTTGTCAAAATATGCCTGGTGGTAGAGGTAGAGGGCGTGGC
GCCCAAGCAGGAGGTGGAGCAGGGCGTAGAGGCGTTGGTTTGAGAAATGG
AATGACAGTATTGAATGtagcagaaaaaaatgatgcAGCGAAGAGGTTGT
CTCAACTTATGTCGAGAGGGAACTCACAAAGGagAGAAGGTTTCTCCAAA
TTCAACaagatttatgaatttgatTACAACCTTCTAAACTATAATTGTAA
AATGGTTATGACGTCAGTATCAGGTCACTTGATGACAATGGATTTCAGTT
CTGTTTATAGAAACTGGAAGAATATCGATCCAGCACAATTATTCCAAGCA
CCCGTCTCTCGATTCGTGCCCGACAACTTCATTGATATAAAGAGGACGTT
AGAGAGAGAGATCCGAAAAAGTCAAGTGTTGGTGATTTGGACTGATGGTG
ACCGAGAAGGAGAAAATATCGGCTTCGAAATCATCGAATGTTGTCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065894-exon-scaffold_448-1491911889:219331..219580 | TCONS_00065894-exon-scaffold_448-1491911889:219331..219580 | Clytia hemisphaerica | exon |
| TCONS_00065894-exon-scaffold_448-1510915933:219331..219580 | TCONS_00065894-exon-scaffold_448-1510915933:219331..219580 | Clytia hemisphaerica | exon |
| TCONS_00065894-exon-scaffold_448-1575043694:219331..219580 | TCONS_00065894-exon-scaffold_448-1575043694:219331..219580 | Clytia hemisphaerica | exon |
| TCONS_00065894-exon-scaffold_448-1491911889:219974..220033 | TCONS_00065894-exon-scaffold_448-1491911889:219974..220033 | Clytia hemisphaerica | exon |
| TCONS_00065894-exon-scaffold_448-1510915933:219974..220033 | TCONS_00065894-exon-scaffold_448-1510915933:219974..220033 | Clytia hemisphaerica | exon |
| TCONS_00065894-exon-scaffold_448-1575043694:219974..220033 | TCONS_00065894-exon-scaffold_448-1575043694:219974..220033 | Clytia hemisphaerica | exon |
| TCONS_00065894-exon-scaffold_448-1491911889:220564..220637 | TCONS_00065894-exon-scaffold_448-1491911889:220564..220637 | Clytia hemisphaerica | exon |
| TCONS_00065894-exon-scaffold_448-1510915933:220564..220637 | TCONS_00065894-exon-scaffold_448-1510915933:220564..220637 | Clytia hemisphaerica | exon |
| TCONS_00065894-exon-scaffold_448-1575043694:220564..220637 | TCONS_00065894-exon-scaffold_448-1575043694:220564..220637 | Clytia hemisphaerica | exon |
| TCONS_00065894-exon-scaffold_448-1491911889:224305..224380 | TCONS_00065894-exon-scaffold_448-1491911889:224305..224380 | Clytia hemisphaerica | exon |
| TCONS_00065894-exon-scaffold_448-1510915933:224305..224380 | TCONS_00065894-exon-scaffold_448-1510915933:224305..224380 | Clytia hemisphaerica | exon |
| TCONS_00065894-exon-scaffold_448-1575043694:224305..224380 | TCONS_00065894-exon-scaffold_448-1575043694:224305..224380 | Clytia hemisphaerica | exon |
| TCONS_00065894-exon-scaffold_448-1491911889:225339..225446 | TCONS_00065894-exon-scaffold_448-1491911889:225339..225446 | Clytia hemisphaerica | exon |
| TCONS_00065894-exon-scaffold_448-1510915933:225339..225446 | TCONS_00065894-exon-scaffold_448-1510915933:225339..225446 | Clytia hemisphaerica | exon |
| TCONS_00065894-exon-scaffold_448-1575043694:225339..225446 | TCONS_00065894-exon-scaffold_448-1575043694:225339..225446 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_448 | supercontig | scaffold_448:219331..225446 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00065894 vs. Swiss-Prot (Human)
Match: TOP3A (DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A PE=1 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 3.122e-52 Identity = 81/130 (62.31%), Postives = 100/130 (76.92%), Query Frame = 2
Query: 176 VLNVAEKNDAAKRLSQLMSRGNSQRREGFSKFNKIYEFDYNLLNYNCKMVMTSVSGHLMTMDFSSVYRNWKNIDPAQLFQAPVSRFVPDNFIDIKRTLEREIRKSQVLVIWTDGDREGENIGFEIIECCQ 565
VL VAEKNDAAK ++ L+S G +RREG SKFNKIYEFDY+L N MVMTSVSGHL+ DF +R W++ +P LF+A + ++ P+NF+DIK+TLERE R+ Q LVIWTD DREGENIGFEII C+
Sbjct: 36 VLCVAEKNDAAKGIADLLSNGRMRRREGLSKFNKIYEFDYHLYGQNVTMVMTSVSGHLLAHDFQMQFRKWQSCNPLVLFEAEIEKYCPENFVDIKKTLERETRQCQALVIWTDCDREGENIGFEIIHVCK 165
The following BLAST results are available for this feature:
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