Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065959 ID=TCONS_00065959|Name=TCONS_00065959|organism=Clytia hemisphaerica|type=transcript|length=2200bpRun BLAST on NCBI transcript from alignment at scaffold_448:415843..423076- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065959 ID=TCONS_00065959|Name=TCONS_00065959|organism=Clytia hemisphaerica|type=transcript|length=7234bp|location=Sequence derived from alignment at scaffold_448:415843..423076- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00065959 vs. Swiss-Prot (Human)
Match: PKHL1 (Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2) HSP 1 Score: 159.073 bits (401), Expect = 7.352e-40 Identity = 116/426 (27.23%), Postives = 201/426 (47.18%), Query Frame = 2 Query: 920 IDIQQQQYPSPPVTGTFVLKYTGENGEEHFSRRIKPDVSEEEMREHVELAFHHI--TGHVKVVRKGTCSGYSWDITFYTVGGNKQQLEIINSTLAGLEMEKGVKTIQDGGMLFGPLTGEFLQTAETKPQVVVSINDIVSVCKGDCSFEYSDALTPTISSITPKTGKGGEASQEVTISCTGCLAGADKNDVTIGGVKCMITTATETEIKCRPGTSPAGNKPVVVNVHGKGKAKTSNGEPILFNYELEVSSMEPKSGAAAGAQITVKGNFDKEENITATFTKVTSSTSRKRRNADDVYVLAVRRVDEGQLMVTTNSMP---DAEYQLTITNGDHTYTTTEKFTADSSQNVAITSITPDTGLPVYGGVDIVIKGSNLKDDMKETEVHIIDPFGPRCEIQYLTQDEIRCTLPHITIIGEVTVLVHVKDKG 2182 I IQ+ Q SPP++G+F ++ G H + + VS ++ + A + G + V R+GTC+GY+W+I + + G + L+I +S + G + V I++GG+ + G+ L+T +PQV V +N I + C GDC F + +TP + +I+P G E + +TI +G + + V++G V C + + E E+KC+ AG+ PV V++ G A+ GE F Y+ ++S + P SG+ AG + F EN T + V EG L T P + +++T T + F+ + Q IT +P + G V++ IKG N +++ + + G C+I + +IRC LP ++ G+ + V V++ G Sbjct: 922 IHIQRIQAASPPLSGSFDIQAYG-----HILKGLPAAVSAADL----QFALQSLEGMGRISVTREGTCAGYAWNIKWRSTCGKQNLLQINDSNIIGEKANMTVTRIKEGGLFRQHVLGDLLRTPSQQPQVEVYVNGIPAKCSGDCGFTWDSNITPLVLAISPSQGSYEEGTI-LTIVGSG-FSPSSAVTVSVGPVGCSLLSVDEKELKCQILNGSAGHAPVAVSMADVGLAQNVGGEEFYFVYQSQISHIWPDSGSIAGGTLLTLSGFGFNENSKVLVGNETCN------------------VIEGDLNRITCRTPKKTEGTVDISVTTNGFQATARDAFSYNCLQTPIITDFSPKV-RTILGEVNLTIKGYNFGNELTQNMAVYVG--GKTCQILHWNFTDIRCLLPKLS-PGKHDIYVEVRNWG 1314 The following BLAST results are available for this feature:
BLAST of TCONS_00065959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|