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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065988 ID=TCONS_00065988|Name=TCONS_00065988|organism=Clytia hemisphaerica|type=transcript|length=2644bp aaaaaaagaaaagaagaatttttgaTAAGAATCTGTTCTTCTTCTTGAAA CACTGTCTTTCTCGTCCTTAACAAACATCTCACCCATACAGCTTTATGAT CGCATCTTAATCTAGTATTGTATTTCTTGTAGATTCTTGAAGACCAAATA CCGCGATTATAAAGGCAAAAAACAACATTTGTACGAATCTAGCGAGGAAC CAAGATGGGTTACTGATTATGAAGGAGAAATGCAAACAAAATTCTCGCTT TTCTGGCAATACTTAGAAATTGTACTTCAATACGGATTCGTCACTATGTT TGTCGCTGCTTTCCCATTGGCTCCTTTGTTTGCCTTGATTAACAACATGG TGGAAATTCGTCTCGATGCTTCAAACTTCATTCACAATTTCCGCCGACCC GTAGCAGAGCGAGCGGAAGATATCGGAGCTTGGTATTCGATCCTTGCTAC CTTAACCACCTTCTCAACAATCGTCAATGGATTTGTATTGGCTTTCACAT CAGAATTGATTCCTAAACTCGTCTACAGATATTACGCCTCAACCACTGGT AGCTTAGAAGGATTCACTGAATGGAGTTTATCCAAATTCCCGATTGCCGA AATCGGGGCAAATGGACGACCCGATAATCCTCAATTAAATATTCCCGATT TCAATGCCACAGCTAATAAATACTGTCTTTACCCTGGTTACCATGAATCA AAGGCACCTTACAAACGTGATCTTGATTACTGGGTTATCACATCTGCTAG ATTAGCTTTTATCTTGGCCTTCCAAGCTCTTGTAATCACAATCACATGGG TCATCGGCTATCTGGTACCTGACGTTCCCAAAACTTTGGAACTCAGAATC AAACGTGAGAACTTTATCGCTGCCGAGATGGAGAAAAACCACAAAGAAAG AACCGGTAAACGAAAACCACGCCCTGATGATGACCGcaatgacgtcacac tttcAGGGGAAATCACTAACCGTGGACACGCAGACTCGTCACTGTAAGCT ACGTACAATCcacgtttttattttagtgagGTCGACCATACAGCTGGTCA CTTTTGATTGGCGTCTATAGAAACAATAGAACGATGCAATCTATTCAGAT CTTGGTACAAAACTGCAATGAAAACTCGGCATCAAAACTCttattaaaaa tgataaaaatgatacaaaaattcataaaaaaagtatttttaggTGAAACA AAACATAGGGAAAAGACAATGCTACTTAATTTGAAGGCGGACTACATTTA TTATTTCTATTTGGGAACTAGcgtaatttttttgagtttttcataGAGCC AAATGTTGCtttgtttattcttttttctttgtttgtctTTGCATTTCTTG CTAGCTTAAAGTTTCTTTGTTATCCCAGTTTTAGCCTAGTCTGCTAATTC TAAACCTAAAATTGAGCTTTCTGATTGGATGAGAGTTGGTAGATAACGAA CGTGATTGGCTAATACATTTCTTATTTCGTTTCCAGGTCACCTGATCATA CTCATACAACATACATCTAAATACCATACCCTCAAACCACATTCTAACTT TTTCCATACAAATATATGTAGAGTAGAAGCCAGAAAACCTTGGATATGTT TATAAGTCTCAAACCATGCATGTTTCTCTAACAATTCCATTATTTTCTCA CATTTTCTGCATGCTGCAAAATTGTTAGGACTGCATTTTGTTAGGTCTTG cacttgatatttttctttgctgAAGCACAGTGAAGAAAACCAAAAGTTTG AACTCTTTATTTACgcacaattttatacacaatcacaaattcatgatatt aatgatacctcggttttagccagtagtggctaAAATTTAAACTAGTCTAA AAATTggataaaatttgccactactggcaaaaacctgggtctttccgtag aaaacattacgtcatgaatatcatgaataaggagTCATTCAGCATTACTC AGACGTTAGTTCTAGATAAGTTCTAACTCTCTTTTTCACTCACTTTTTCT CTATGCACCACTCTCTGCATTTTTCTTGCAAAGTATTTTTATAGGTATCT TTAATATTCTTAGGAAATGATCTTTAATTTATTCACTTTTTGTAGTATCG TACAcgtaatgttatttttttcgtttatttttatactttttcgtTCGTAG AtaatcttcaaaaatatttttttacactACTAACCACCAAAAAATACACT TATTATTCAGCTTAATGATTACTGgcaattttcttttgtattttttgtgt ttCTTTAAAATGACACTTTTATAGTCTTGGGAATTAATGTTACATACtta atttatattttcttgggtgtattttcagttttttagcacttcctttttgt ttctttttgctGGCATACAGCCACGTTGTCCAAACGTTTGAACggtttat attttcatttgtttaccCTCTGTTATTCCCAAATAGCATTAATTTATctt aaaacattatttttttatttcaatttttttgggtaAAACTATAACTAAGt actaaatttctttttttttcaattattttttaatatggcaacttttggtt tttctcttgtaaaaattatattggaaaaatatattttaagaaaCTTGTAT ATGATATTTGTGTACTCTGTGTCTTCAATTATAGTTGATCTACG Run BLAST on NCBI transcript from alignment at scaffold_448:641950..647983- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065988 ID=TCONS_00065988|Name=TCONS_00065988|organism=Clytia hemisphaerica|type=transcript|length=6034bp|location=Sequence derived from alignment at scaffold_448:641950..647983- (Clytia hemisphaerica) AAAAAAAGAAAAGAAGAATTTTTGATAAGAATCTGTTCTTCTTCTTGAAA
CACTGTCTTTCTCGTCCTTAACAAACATCTCACCCATACAGCTTTATGAT
CGCATCTTAATCTAGTATTGTATTTCTTGTAGATTCTTGAAGACCAAATA
CCGCGATTATAAAGGCAAAAAACAACATTTGTACGAATCTAGCGAGGAAC
CAAGATGGGTTACTGATTATGAAGGAGAAATGCAAACAAAATTCTCGCTT
TTCTGGCAATACTTAGAAATTGGTAAGTATGCTATAAGACTGTTTTTTGT
GTTCGATGTTAAAGAGCTGATTATGTCCAGCTCAGAAACAAATATGATCA
CGCAACGATAACCGCACTGGAGTGATGCGAGATCGTCGAATCATGAATGT
CTAAAATTTAAAATCTCTTTTTTGAGGTAATACTTTCGTTAATAAATTTT
CAAGGTTGTTTTACAATCTTCACTTGATTGTACGAAATTCTTCATTTTCA
TTTTCTCTCAGTACTTCAATACGGATTCGTCACTATGTTTGTCGCTGCTT
TCCCATTGGCTCCTTTGTTTGCCTTGATTAACAACATGGTGGAAATTCGT
CTCGATGCTTCAAACTTCATTCACAATTTCCGCCGACCCGTAGCAGAGCG
AGCGGAAGATATCGGAGCTTGGTATTCGATCCTTGCTACCTTAACCACCG
TAAGTAGTCCTTTTAGTGTTCTGAATTAGTAAGTAAGTAAGTAATGAATT
TATTTGTCTTAATAAGCGAGACGAGCGACCACACTCATAGACATAAAACT
AAACTAAGGAGGTGGCCGCACGCTACTGTTACAAGAAAAAATAGTTTCTA
AGATCTTACTAGGATACATTGAAAATAATTTTTTTATATATTTCGATTGC
ATTAGTTGGTATTCTGTACTGCAACTTTCCATTATGAAAGCAATTGCGGT
AATCTGTAAAGGCAATCTTTTATGCAATCCTGATGTTAACGGCCAGAATC
GTAAGCTGGTTGGTTGCATCCACTAACGGATTCGTGCTCCTTATAGCTAT
ACTACTTATACTTAAAGGAAGAAATTTTTGCGGGAATTTAATTTGGCGGA
TAGCCGAAAAAGTTTTTTCAGGAAATTTAATTTAGCGGTTTACTTGGCGG
GAATTTAATTTGGCAGATGAAGGACATTTTTGTCCAAAAAACGCCATTAA
AAAAGGAAATACCTGTTTTAAAGCCTAAAGTAGCACACATTTTGGGGAAT
AAATAGGGCAATTTAAATTTGGCGGGACTTAAATTGGCGGATTTTGACCA
AATCCGCCAAATTTAAGTTCGCGCCAAAATTTCTTCTTATAAGGTATCTG
CGGTTTTGTAGAGGTCTGAGATTCGGACTACAATAATCACGGAACTTTTT
TGAGCAAAACTTTCTGAGCAAAACTTTTTAAGCAAAACTTTTTAAGCAAA
ACTTTTTAAGCAAAATTTTTAAGCAAAACTTTTTAAGCAAAACTTTAAAA
AACCTCAATATTTACCGTCTGCGGAGCCACCTGTGCCCCATGCGTTGGTC
TCGTGTTTGAGATAATAATAAGCTGTCTGACATCTCGCGATGCGTGTGAT
CTTTCCTATAAATTTCTACTTTATTTGCTACACGGAAATCTAAAATCCGA
ATAATACGTTGATGGACTTTGAAGTTTTTGAGTTGTTCAGCTTTTCAATT
GTATGACTTCGATTGCCTTCCTCTCTTAGCCTTAGCCTTTGTTAATTCAG
TTGGAATTTATACCAATAATATCTGATTCATCTTTCAGTTCTCAACAATC
GTCAATGGATTTGTATTGGCTTTCACATCAGAATTGATTCCTAAACTCGT
CTACAGATATTACGCCTCAACCACTGGTAGCTTAGAAGGATTCACTGAAT
GGAGTTTATCCAAATTCCCGATTGCCGAAATCGGGGCAAATGGACGACCC
GATAATCCTCAATTAAATATTCCCGATTTCAATGCCACAGCTAATAAATA
CTGTCTGTAAGTATTATTTTATGAAAGTCGTTTTTGAATTGAACTCTTTT
TATTTCTCTTTCAATAAGTAAATATAGAGCTATTTATGGTTACACGCTTT
TTATTCATAAGAACATTAAAAAGATTCTTAACTTTTTTACTTCCGTTGAG
TCGAGCCTCAAACATTCTTATTTTAACCATTTTGTGAGTATTTTAAGTGC
GATTTTCTACGAAATCAAATATCTTAAGTCTGCAAAGCCTTAAAATGTTC
TTAACTTATAATTTATTCCGGCCATCGAAGTTTATGTTTATTTAAGCCCA
TTATAAATTAACACCTTTCTCTTTTCCCACAGTTACCCTGGTTACCATGA
ATCAAAGGCACCTTACAAACGTGATCTTGATTACTGGGTTATCACATCTG
CTAGATTAGCTTTTATCTTGGCCTTCCAAGCTCTTGTAATCACAATCACA
TGGGTCATCGGCTATCTGGTACCTGACGTTCCCAAAAGTAAGTATTTGCA
CCTTTATTGAAACATTTCTAATCTTAAAATGATCCATTGAAGGTTTGTTT
TTATTATAATATTCTATTCCATCAATCGAAAATTTCCTTTGTTCTTATAA
ATAGCTATTGTATTCTAACAAAGGTTTCAGACAAAAGTTCCCTGAGTCTA
AAATGCTTATTTTATCCTAAATATTCAATAAATTACGGTTTAAACGATAT
ATCTGACATTAAATAAAAGTTNTTGACATTAAATAAAAGTTAGGAATTTA
CCGATAATTTCATGGCAAAAGCTCTATTATTTCAGGAGCTGTCGCCATTA
ATCTGACCTAGGGTTAAAAGCAACGAAGTTAAATATTTATTGAAATGTTG
CATTAATGTAAAATGAGGGAAGATGATACCTTTTTCGTTGACTTGCGTTA
TTGTGAAGCGAATATACACGAGCGAAGCATGTTTTCTATAGTGTGTTTGT
ACCCTTAAATCAGCAGAGCAAGTAAACTTCATGTGTTTTTACGGTACTGA
GAAAGTCTGTTCAATTCGTCAGATTTCACAAAACGTTTAAAATGATGTTT
TTTCATTCAAATAAATTTCTTATTTCTTCAGCTTTGGAACTCAGAATCAA
ACGTGAGAACTTTATCGCTGCCGAGATGGAGAAAAACCACAAAGNATTTT
ATGAAAGTCGTTTTTGAATTGAACTCTTTTTATTTCTCTTTCAATAAGTA
AATATAGAGCTATTTATGGTTACACGCTTTTTATTCATAAGAACATTAAA
AAGATTCTTAACTTTTTTACTTCCGTTGAGTCGAGCCTCAAACATTCTTA
TTTTAACCATTTTGTGAGTATTTTAAGTGCGATTTTCTACGAAATCAAAT
ATCTTAAGTCTGCAAAGCCTTAAAATGTTCTTAACTTATAATTTATTCCG
GCCATCGAAGTTTATGTTTATTTAAGCCCATTATAAATTAACACCTTTCT
CTTTTCCCACAGTTACCCTGGTTACCATGAATCAAAGGCACCTTACAAAC
GTGATCTTGATTACTGGGTTATCACATCTGCTAGATTAGCTTTTATCTTG
GCCTTCCAAGCTCTTGTAATCACAATCACATGGGTCATCGGCTATCTGGT
ACCTGACGTTCCCAAAAGTAAGTATTTGCACCTTTATTGAAACATTTCTA
ATCTTAAAATGATCCATTGAAGGTTTGTTTTTATTATAATATTCTATTCC
ATCAATCGAAAATTTCCTTTGTTCTTATAAATAGCTATTGTATTCTAACA
AAGGTTTCAGACAAAAGTTCCCTGAGTCTAAAATGCTTATTTTATCCTAA
ATATTCAATAAATTACGGTTTAAACGATATATCTGACATTAAATAAAAGT
TAGAAATTTACCGAAAATTTAATGGCAAAAGCTCTATTTCAGGAGCTGTC
GCCATTAATCTGACCTCCGAACAGAAATAGCTAGGGGGGCCTAGCACGAA
TAGGGTTAAAAGCAACGAAGTTAAATATTTATTGAAATGCTGCATTAATG
TGAAACGAGGGAAGATGATACCTTTTTCGTTGACTTGCGTTATTGTGAAG
CGAATATACACGAGCGAAGCATGTTTTCTATGGTGTGTTTGTACCCTTAA
ATCAGCAGAGCAAGTAAACTTCATGTGTTTTTACGGTACTGAAAAAGTCT
GCTCAATTCGTCAGATTTCACAAAACGTTTAAAATGATGTTTTCTCATTC
AAATAAATTTCTTATTTCTTCAGCTTTGGAACTCAGAATCAAACGTGAGA
ACTTTATCGCTGCCGAGATGGAGAAAAACCACAAAGAAAGAACCGGTAAA
CGAAAACCACGCCCTGATGATGACCGCAATGACGTCACACTTTCAGGGGA
AATCACTAACCGTGGACACGCAGACTCGTCACTGTAAGCTACGTACAATC
CACGTTTTTATTTTAGTGAGGTCGACCATACAGCTGGTCACTTTTGATTG
GCGTCTATAGAAACAATAGAACGATGCAATCTATTCAGATCTTGGTACAA
AACTGCAATGAAAACTCGGCATCAAAACTCTTATTAAAAATGATAAAAAT
GATACAAAAATTCATAAAAAAAGTATTTTTAGGTGAAACAAAACATAGGG
AAAAGACAATGCTACTTAATTTGAAGGCGGACTACATTTATTATTTCTAT
TTGGGAACTAGCGTAATTTTTTTGAGTTTTTCATAGAGCCAAATGTTGCT
TTGTTTATTCTTTTTTCTTTGTTTGTCTTTGCATTTCTTGCTAGCTTAAA
GTTTCTTTGTTATCCCAGTTTTAGCCTAGTCTGCTAATTCTAAACCTAAA
ATTGAGCTTTCTGATTGGATGAGAGTTGGTAGATAACGAACGTGATTGGC
TAATACATTTCTTATTTCGTTTCCAGGTCACCTGATCATACTCATACAAC
ATACATCTAAATACCATACCCTCAAACCACATTCTAACTTTTTCCATACA
AATATATGTAGAGTAGAAGCCAGAAAACCTTGGATATGTTTATAAGTCTC
AAACCATGCATGTTTCTCTAACAATTCCATTATTTTCTCACATTTTCTGC
ATGCTGCAAAATTGTTAGGACTGCATTTTGTTAGGTCTTGCACTTGATAT
TTTTCTTTGCTGAAGCACAGTGAAGAAAACCAAAAGTTTGAACTCTTTAT
TTACGCACAATTTTATACACAATCACAAATTCATGATATTAATGATACCT
CGGTTTTAGCCAGTAGTGGCTAAAATTTAAACTAGTCTAAAAATTGGATA
AAATTTGCCACTACTGGCAAAAACCTGGGTCTTTCCGTAGAAAACATTAC
GTCATGAATATCATGAATAAGGAGTCATTCAGCATTACTCAGACGTTAGT
TCTAGATAAGTTCTAACTCTCTTTTTCACTCACTTTTTCTCTATGCACCA
CTCTCTGCATTTTTCTTGCAAAGTATTTTTATAGGTATCTTTAATATTCT
TAGGAAATGATCTTTAATTTATTCACTTTTTGTAGTATCGTACACGTAAT
GTTATTTTTTTCGTTTATTTTTATACTTTTTCGTTCGTAGATAATCTTCA
AAAATATTTTTTTACACTACTAACCACCAAAAAATACACTTATTATTCAG
CTTAATGATTACTGGCAATTTTCTTTTGTATTTTTTGTGTTTCTTTAAAA
TGACACTTTTATAGTCTTGGGAATTAATGTTACATACTTAATTTATATTT
TCTTGGGTGTATTTTCAGTTTTTTAGCACTTCCTTTTTGTTTCTTTTTGC
TGGCATACAGCCACGTTGTCCAAACGTTTGAACGGTTTATATTTTCATTT
GTTTACCCTCTGTTATTCCCAAATAGCATTAATTTATCTTAAAACATTAT
TTTTTTATTTCAATTTTTTTGGGTAAAACTATAACTAAGTACTAAATTTC
TTTTTTTTTCAATTATTTTTTAATATGGCAACTTTTGGTTTTTCTCTTGT
AAAAATTATATTGGAAAAATATATTTTAAGAAACTTGTATATGATATTTG
TGTACTCTGTGTCTTCAATTATAGTTGATCTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00065988-exon-scaffold_448-1575043694:647712..647983 | TCONS_00065988-exon-scaffold_448-1575043694:647712..647983 | Clytia hemisphaerica | exon |
TCONS_00065988-exon-scaffold_448-1575043694:647285..647472 | TCONS_00065988-exon-scaffold_448-1575043694:647285..647472 | Clytia hemisphaerica | exon |
TCONS_00065988-exon-scaffold_448-1575043694:645978..646195 | TCONS_00065988-exon-scaffold_448-1575043694:645978..646195 | Clytia hemisphaerica | exon |
TCONS_00065988-exon-scaffold_448-1575043694:645497..645651 | TCONS_00065988-exon-scaffold_448-1575043694:645497..645651 | Clytia hemisphaerica | exon |
TCONS_00065988-exon-scaffold_448-1575043694:641950..643760 | TCONS_00065988-exon-scaffold_448-1575043694:641950..643760 | Clytia hemisphaerica | exon |
TCONS_00065988-exon-scaffold_448-1510915933:647712..647983 | TCONS_00065988-exon-scaffold_448-1510915933:647712..647983 | Clytia hemisphaerica | exon |
TCONS_00065988-exon-scaffold_448-1510915933:647285..647472 | TCONS_00065988-exon-scaffold_448-1510915933:647285..647472 | Clytia hemisphaerica | exon |
TCONS_00065988-exon-scaffold_448-1510915933:645978..646195 | TCONS_00065988-exon-scaffold_448-1510915933:645978..646195 | Clytia hemisphaerica | exon |
TCONS_00065988-exon-scaffold_448-1510915933:645497..645651 | TCONS_00065988-exon-scaffold_448-1510915933:645497..645651 | Clytia hemisphaerica | exon |
TCONS_00065988-exon-scaffold_448-1510915933:641950..643760 | TCONS_00065988-exon-scaffold_448-1510915933:641950..643760 | Clytia hemisphaerica | exon |
TCONS_00065988-exon-scaffold_448-1491911889:647712..647983 | TCONS_00065988-exon-scaffold_448-1491911889:647712..647983 | Clytia hemisphaerica | exon |
TCONS_00065988-exon-scaffold_448-1491911889:647285..647472 | TCONS_00065988-exon-scaffold_448-1491911889:647285..647472 | Clytia hemisphaerica | exon |
TCONS_00065988-exon-scaffold_448-1491911889:645978..646195 | TCONS_00065988-exon-scaffold_448-1491911889:645978..646195 | Clytia hemisphaerica | exon |
TCONS_00065988-exon-scaffold_448-1491911889:645497..645651 | TCONS_00065988-exon-scaffold_448-1491911889:645497..645651 | Clytia hemisphaerica | exon |
TCONS_00065988-exon-scaffold_448-1491911889:641950..643760 | TCONS_00065988-exon-scaffold_448-1491911889:641950..643760 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_448 | supercontig | scaffold_448:641950..647983 - |
Blast
BLAST of TCONS_00065988 vs. Swiss-Prot (Human)
Match: ANO4 (Anoctamin-4 OS=Homo sapiens GN=ANO4 PE=2 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 7.186e-47 Identity = 111/251 (44.22%), Postives = 153/251 (60.96%), Query Frame = 2
Query: 200 PRWVTDYEGEMQTKFSLFWQYLEIVLQYGFVTMFVXXXXXXXXXXXINNMVEIRLDASNFIHNFRRPVAERAEDIGAWYSILATLTTFSTIVNGFVLAFTSELIPKLVYRY-YASTTGSLE-------GFTEWSLSKFPIAEIGANGRPDNPQLNIPDFNATANKYCLYPGYHE---SKAPYKRDLDYWVITSARLAFILAFQALVITITWVIGYLVPDVPKTLELRIKRENFI------AAEMEKNHKER 901
P+W DY + + LF +YLE++LQ+GF T+FVAAFPLAPL AL+NN++EIRLDA F+ +RRP+A RA+DIG WY IL + S I N FV+A TS+ IP+LVY Y Y G E G+ SLS F I++ P++ + +F+ T KYC Y Y + S PY L +W + +ARLAFI+ F+ LV I +I YL+PD+PK L R++RE ++ AE+E+ KER
Sbjct: 693 PQWEKDYNLQPMNAYGLFDEYLEMILQFGFTTIFVAAFPLAPLLALLNNIIEIRLDAYKFVTQWRRPLASRAKDIGIWYGILEGIGILSVITNAFVIAITSDFIPRLVYAYKYGPCAGQGEAGQKCMVGYVNASLSVFRISDFENRSEPES---DGSEFSGTPLKYCRYRDYRDPPHSLVPYGYTLQFWHVLAARLAFIIVFEHLVFCIKHLISYLIPDLPKDLRDRMRREKYLIQEMMYEAELERLQKER 940
The following BLAST results are available for this feature:
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