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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065993 ID=TCONS_00065993|Name=TCONS_00065993|organism=Clytia hemisphaerica|type=transcript|length=4990bpRun BLAST on NCBI protein sequence of TCONS_00065993-protein >TCONS_00065993-protein ID=TCONS_00065993-protein|Name=TCONS_00065993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=582bp MADQEDSEAHLLTNTQGDMSDEKTKTPAAEDLMFEDGVRRIDIIFAYEANRun BLAST on NCBI transcript from alignment at scaffold_448:641950..672344- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065993 ID=TCONS_00065993|Name=TCONS_00065993|organism=Clytia hemisphaerica|type=transcript|length=30395bp|location=Sequence derived from alignment at scaffold_448:641950..672344- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_448:641950..672344- >TCONS_00065993 ID=TCONS_00065993|Name=TCONS_00065993|organism=Clytia hemisphaerica|type=CDS|length=10494bp|location=Sequence derived from alignment at scaffold_448:641950..672344- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065993 vs. Swiss-Prot (Human)
Match: ANO4 (Anoctamin-4 OS=Homo sapiens GN=ANO4 PE=2 SV=1) HSP 1 Score: 340.117 bits (871), Expect = 8.673e-98 Identity = 206/572 (36.01%), Postives = 325/572 (56.82%), Query Frame = 2
Query: 335 GDMSDEKTKTPAAEDLMFEDGVRRIDIIFAYEANAELDPQRQKYLDNLKVLGLEFEQAKMHGKDYGSFEGQEQKENETHFIKVHAPFDLLCDTAEDMKIKMPVKENDINIPAWYENYSVIN-TIKNLDPFIIREPKTVDEKLF--------FVATFDKDRLKEFVGHENQDTFFSPAERSRIVYFLMEKTKFGDQDLDVGILKMQHEGIITDVYPLHDGPTKE---IDGSEPTNDRQRLQEDWARPGRIFKYQPVPAIKEYFGEKIALYFSWLGFYTAFLIPAAIVGVICFIYGVGTAVNYTPIKELCAEDTNNNGTGAYKFVMCPLCDKLCSYYLLSKEGCLYSKVTHFFDNEATLFFAIFMSLWATIFLEFWKRKQVSLAYEWHTMXXXXXXXXXXXXYLAAVTRLKE-NPVTGKMEPYMPLGQKCKRLTXXXXXXXXXXXXXXXXXXXXXXXRAAFYAFLLKSDNAMIRQRAKLVVSGVAACVNLIAINLLKFIYQRIAVMITNWENPRTRTDYEDSFTVKMFWFQFANTYASIFYVAFFKSEFFTGSVGRYKRFTASNFRFDGCSVQG 2011
G+ E+ K+ L F DG RID I Y + +R+ + N++ GL+ E+ ++ F+K+HAP+++L AE M ++MP + +P Y+ S I+ I ++ ++P +D++ + A F + R+ F+ H N++TFF+ A RSRIV+ ++++ K+ + +G+ ++ G +PLH+G + I N R L E WA G +KYQP+ ++ YFGEKI LYF+WLG+YT L PAA +G+ F+YGV T + KE+C A +MCP+CDK C + LS + C+Y+KVTH FDN AT+FFA+FM++WAT+FLEFWKR++ +AY+W +D+EE+EE RP++ A ++ + NP++GK EPY KC RL + + F + +V+AAV +VI+R + A+IR +++ +G A C+N I LL +Y+++A+++TN E PRT +++E+SFT+KMF FQF N +S FY+AFF FTG G Y R + +R + C G
Sbjct: 98 GETVPERNKS---NGLYFRDGKCRIDYILVYRKSNPQTEKREVFERNIRAEGLQMEKE------------SSLINSDIIFVKLHAPWEVLGRYAEQMNVRMPFRRKIYYLPRRYKFMSRIDKQISRFRRWLPKKPMRLDKETLPDLEENDCYTAPFSQQRIHHFIIH-NKETFFNNATRSRIVHHILQRIKYEEGKNKIGLNRLLTNGSYEAAFPLHEGSYRSKNSIRTHGAENHRHLLYECWASWGVWYKYQPLDLVRRYFGEKIGLYFAWLGWYTGMLFPAAFIGLFVFLYGVTTLDHSQVSKEVCQ---------ATDIIMCPVCDKYCPFMRLS-DSCVYAKVTHLFDNGATVFFAVFMAVWATVFLEFWKRRRAVIAYDWDLIDWEEEEEEIRPQFEAKYSKKERMNPISGKPEPYQAFTDKCSRLIVSASGIFFMICVVIAAVFGIVIYRVVTVSTFAAFKWALIRNNSQVATTGTAVCINFCIIMLLNVLYEKVALLLTNLEQPRTESEWENSFTLKMFLFQFVNLNSSTFYIAFFLGR-FTGHPGAYLRLI-NRWRLEECHPSG 641 HSP 2 Score: 181.8 bits (460), Expect = 3.497e-46 Identity = 111/251 (44.22%), Postives = 153/251 (60.96%), Query Frame = 3
Query: 3039 PRWVTDYEGEMQTKFSLFWQYLEIVLQYGFVTMFVXXXXXXXXXXXINNMVEIRLDASNFIHNFRRPVAERAEDIGAWYSILATLTTFSTIVNGFVLAFTSELIPKLVYRY-YASTTGSLE-------GFTEWSLSKFPIAEIGANGRPDNPQLNIPDFNATANKYCLYPGYHE---SKAPYKRDLDYWVITSARLAFILAFQALVITITWVIGYLVPDVPKTLELRIKRENFI------AAEMEKNHKER 3740
P+W DY + + LF +YLE++LQ+GF T+FVAAFPLAPL AL+NN++EIRLDA F+ +RRP+A RA+DIG WY IL + S I N FV+A TS+ IP+LVY Y Y G E G+ SLS F I++ P++ + +F+ T KYC Y Y + S PY L +W + +ARLAFI+ F+ LV I +I YL+PD+PK L R++RE ++ AE+E+ KER
Sbjct: 693 PQWEKDYNLQPMNAYGLFDEYLEMILQFGFTTIFVAAFPLAPLLALLNNIIEIRLDAYKFVTQWRRPLASRAKDIGIWYGILEGIGILSVITNAFVIAITSDFIPRLVYAYKYGPCAGQGEAGQKCMVGYVNASLSVFRISDFENRSEPES---DGSEFSGTPLKYCRYRDYRDPPHSLVPYGYTLQFWHVLAARLAFIIVFEHLVFCIKHLISYLIPDLPKDLRDRMRREKYLIQEMMYEAELERLQKER 940 The following BLAST results are available for this feature:
BLAST of TCONS_00065993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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