TCONS_00066013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066013
Unique NameTCONS_00066013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066013 ID=TCONS_00066013|Name=TCONS_00066013|organism=Clytia hemisphaerica|type=transcript|length=426bp
AAAATGATTCTTCCTGGTAAGATTTTATTTGTTTGTGTTTAAAATTGTAA
ATCAAATGGTGAAAAAGGcataaaaaagtcataaaatgccAGAACAAAAA
TAACATGACAAAAAGAGGCAGAATAAGCCCAAGAAAAGAGGCAAAATAAG
CCCGAGAAAAGAGGCAAAATAAGCCCATAAAAAGAGGCATAGACAGCCCA
CCCTCACTTTAAACAAAGGTTAGTTAGATACTTTTTTCTTGATCTTTTCG
GACATTATCACAACAAGCCTCATCAGCTGCATGAATAAACTAACCTTTAT
TTACAGTGTAGGATATAAAAGAAAGCTCAAGCTAATATTGAGCTGAAAAG
AGGCACAGAGAGCCCATAAAAGAGGCAAAATGCCCAGTGGTGtcaatttt
gtaatatttttaggAACAAACAGAAC
Run BLAST on NCBI

transcript from alignment at scaffold_448:190943..191368

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066013 ID=TCONS_00066013|Name=TCONS_00066013|organism=Clytia hemisphaerica|type=transcript|length=426bp|location=Sequence derived from alignment at scaffold_448:190943..191368 (Clytia hemisphaerica)
GTTCTGTTTGTTcctaaaaatattacaaaattgaCACCACTGGGCATTTT
GCCTCTTTTATGGGCTCTCTGTGCCTCTTTTCAGCTCAATATTAGCTTGA
GCTTTCTTTTATATCCTACACTGTAAATAAAGGTTAGTTTATTCATGCAG
CTGATGAGGCTTGTTGTGATAATGTCCGAAAAGATCAAGAAAAAAGTATC
TAACTAACCTTTGTTTAAAGTGAGGGTGGGCTGTCTATGCCTCTTTTTAT
GGGCTTATTTTGCCTCTTTTCTCGGGCTTATTTTGCCTCTTTTCTTGGGC
TTATTCTGCCTCTTTTTGTCATGTTATTTTTGTTCTggcattttatgact
tttttatgCCTTTTTCACCATTTGATTTACAATTTTAAACACAAACAAAT
AAAATCTTACCAGGAAGAATCATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041336XLOC_041336Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066013-exon-scaffold_448-1491911889:190943..191368TCONS_00066013-exon-scaffold_448-1491911889:190943..191368Clytia hemisphaericaexon
TCONS_00066013-exon-scaffold_448-1510915933:190943..191368TCONS_00066013-exon-scaffold_448-1510915933:190943..191368Clytia hemisphaericaexon
TCONS_00066013-exon-scaffold_448-1575043694:190943..191368TCONS_00066013-exon-scaffold_448-1575043694:190943..191368Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:190943..191368 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.326984	0	0	0.181105	2.86621	1.56802	1.89175	0.983908	0.688857	0.853261	0	0.871078	0.6524	1.58089	0.557017	0.797019	0.368198	1.00638	0.173796	1.09119	1.26459	0.462616	0.374913	0	1.0532	0.15666	0.67254	0	1.08878	1.10929
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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