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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066022 ID=TCONS_00066022|Name=TCONS_00066022|organism=Clytia hemisphaerica|type=transcript|length=2429bp
CTAAAGCAATCATTTGTTGTATCTTTTGAACATCACGCACCATAATTTGA
TAACTAGAACGAATTTGAAATATACTATCCATTGAATGTACGTTCTTTCC
AATAAGCATGCAAAATGTTAGAAGAATAACAGGATAAATGTAATAGATCC
TTCTGCAATCGTGCCAACAGCAATGTGTGAAACAATTATCAGGTGAAAAA
TTGAATAGTTTACATGTGAATAGTGCCGCAAGACCGGtcagaataaaaat
atcgataaaattAATATTATTCATTATTACAATAAAAAAGGGATATATTA
GTACTAACGGTGACTAAGCAGGTAGCGCAAAACCCCCACTGGCTGTTTCT
GGAGGAAACATTATCTCCGAACCGAGTGCATCAGTCACCCCGACCTCCGG
AGTTTAAAGGTCCTCCCTttgtaaataataaaaaagctATACACAAAGTA
CGTTAAAAACAGCGTTGTTCCGTAATCTGGATTCATTAAAGATCGCGTGT
AACCGTAAAAGTGGCCCACTTCGCTGCTTGTAATGAGGATAGCCGTGCAT
GAACCATATCGAACAATGTCGTTGAATCCCGTTGTTTTCTCCAATGCTGA
TGTCGATTCGTCTCGTTTTTACAtgaaagcaaaaaaagaaatagaagtgA
TTAGCTTAACTTAACTACAAACTTTTTGCAAGAGCGaggattttgaaatg
aaaagatGAGACATTTAAACACGCATTTTTGACGCATGCGCGCAGCTTGT
CCCAATCTGCGCAAAGATCATCAAGCAGCTTTGTGTGCGAAACCGTTGAG
AAACTCGTTTCCCGTCTTTCTTCGATCGCCGAGAAACACGCTTCTCCACT
ATTTCTCCTCAAAGCTTAAGAATAATACATAGAAAGTAGAAATAATAAGA
GACatgaatttctttgtttatTGGATACATCTTGCAATGAAAAACACGag
gagaagaaaagaaaaggtaTGGATGCAAAAACTCTTCGATTATATTCCTA
ATCGGTTGGAAACTTTGAACCTGTTAGCATGACTGTCCTTGATGTACTTA
TCTCTGCTTGTATTAGAGGACCAACGACCGTGCTTCGAAATCATACGGTC
CGAGACACCATTGTTCGCAGCCTCTGAGGCGCCTCCAGAACGTAAAGAAT
GTAGACCATACTGTCTTGTGTCTGTAATAATATTTGACAAATGCTCCTTA
AAAGATTCCCTTGCAGTCGTGTAGGATATTTGATAATGACCATGGGCCGA
ATGACCTACCTTACACTTGAAAAGcctacaaaatagaaaatctttaGGTT
TCTTAAGCTTTGTGAGATGAAGATATTTTCGAAGCCAGTAGACAGAACAG
TAAGGTGTCTTTGTCTCGCTAATGAAAACTGTGTCTCCTTCTCTCAGTTG
ATCGGTTTTTGAACTTGGTAGGAAGATTTTCACTCCATCTGTACAAAGAG
TAATATCTTTGATCTGGATTTCTAACATTTCGCTTATTCTGAAAAATCCG
GAAAAACCAAGTACGGTCATCAATATAAATCTCATATCAATTAGGTTGTC
CGAAGTGGTGTAACGATCAACAATAACTTTCAAAAACTCAGATGTAATAG
GCTCTTTTCGATTTCGTTTAGCATCGGGGTTTCTATTCGCAATAATGCGT
TTCCCACCTTCGAATGCGAGTTTTACCAGAGGGTTGTCCGTAGGAGAAGA
AAAACCAGATGTATGGTGACTCCACCTGATTCCCATCATAGCGGTAGTTA
GGGCTCCTTCGGTCGCGTCTGAGCAAGTTAAATCATTCAAGTAGATTGCC
ACAAAAAAGGGGTCTGCAGGACAAAAAGACACTTCTTCaaagtttttggc
ccaaatctTCCATTTTTCCCACGCAGGTTTGTACTTTTTCAGAGTTGATT
CGGCATAGGCGGCCTCTAAGAGATCGGGGAGATTAGCTGCTTTTTCCCTT
AGCCTCTGATCTTTGATTGCCTCTATCCTTTGCTCGAGAAGGGGATGCGT
AACTTCTTCtgaataaaatgataaaagaaataatataagaaaaaaactCT
CATACCTCTGGAAGTGGCATATGCAACAAAGCAGTGATACCATGATAATC
GTCAATCGATATCTTCCTCACGCAAAAGATATCTTTAAAAGGTATTGCAA
CAGAGCATGATACCAAAAACTGATATGAGCAACGAGGCATTCATATCCAC
AAATATGCAACATATGTGCATCATAATCTCAAAACACTGATATCTGCAAC
AGAGCACGATATCCACAAATTGATAATAATGTCGGTATCCACCAATGTGC
AACATATGTGCACCATAATCTCAAAACATTGATATCTGCAACAGAGCACG
ATATCCACAATTGATAACAATGTCGATACCAGCAAATATAGCATTGATAC
CATGCTTCATCGTTTGTTCTCAGTTTTTA Run BLAST on NCBI transcript from alignment at scaffold_448:604489..606917 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066022 ID=TCONS_00066022|Name=TCONS_00066022|organism=Clytia hemisphaerica|type=transcript|length=2429bp|location=Sequence derived from alignment at scaffold_448:604489..606917 (Clytia hemisphaerica)
TAAAAACTGAGAACAAACGATGAAGCATGGTATCAATGCTATATTTGCTG
GTATCGACATTGTTATCAATTGTGGATATCGTGCTCTGTTGCAGATATCA
ATGTTTTGAGATTATGGTGCACATATGTTGCACATTGGTGGATACCGACA
TTATTATCAATTTGTGGATATCGTGCTCTGTTGCAGATATCAGTGTTTTG
AGATTATGATGCACATATGTTGCATATTTGTGGATATGAATGCCTCGTTG
CTCATATCAGTTTTTGGTATCATGCTCTGTTGCAATACCTTTTAAAGATA
TCTTTTGCGTGAGGAAGATATCGATTGACGATTATCATGGTATCACTGCT
TTGTTGCATATGCCACTTCCAGAGGTATGAGagtttttttcttatattat
ttcttttatcattttattcaGAAGAAGTTACGCATCCCCTTCTCGAGCAA
AGGATAGAGGCAATCAAAGATCAGAGGCTAAGGGAAAAAGCAGCTAATCT
CCCCGATCTCTTAGAGGCCGCCTATGCCGAATCAACTCTGAAAAAGTACA
AACCTGCGTGGGAAAAATGGAagatttgggccaaaaactttGAAGAAGTG
TCTTTTTGTCCTGCAGACCCCTTTTTTGTGGCAATCTACTTGAATGATTT
AACTTGCTCAGACGCGACCGAAGGAGCCCTAACTACCGCTATGATGGGAA
TCAGGTGGAGTCACCATACATCTGGTTTTTCTTCTCCTACGGACAACCCT
CTGGTAAAACTCGCATTCGAAGGTGGGAAACGCATTATTGCGAATAGAAA
CCCCGATGCTAAACGAAATCGAAAAGAGCCTATTACATCTGAGTTTTTGA
AAGTTATTGTTGATCGTTACACCACTTCGGACAACCTAATTGATATGAGA
TTTATATTGATGACCGTACTTGGTTTTTCCGGATTTTTCAGAATAAGCGA
AATGTTAGAAATCCAGATCAAAGATATTACTCTTTGTACAGATGGAGTGA
AAATCTTCCTACCAAGTTCAAAAACCGATCAACTGAGAGAAGGAGACACA
GTTTTCATTAGCGAGACAAAGACACCTTACTGTTCTGTCTACTGGCTTCG
AAAATATCTTCATCTCACAAAGCTTAAGAAACCtaaagattttctatttt
gtaggCTTTTCAAGTGTAAGGTAGGTCATTCGGCCCATGGTCATTATCAA
ATATCCTACACGACTGCAAGGGAATCTTTTAAGGAGCATTTGTCAAATAT
TATTACAGACACAAGACAGTATGGTCTACATTCTTTACGTTCTGGAGGCG
CCTCAGAGGCTGCGAACAATGGTGTCTCGGACCGTATGATTTCGAAGCAC
GGTCGTTGGTCCTCTAATACAAGCAGAGATAAGTACATCAAGGACAGTCA
TGCTAACAGGTTCAAAGTTTCCAACCGATTAGGAATATAATCGAAGAGTT
TTTGCATCCAtaccttttcttttcttctcctCGTGTTTTTCATTGCAAGA
TGTATCCAataaacaaagaaattcatGTCTCTTATTATTTCTACTTTCTA
TGTATTATTCTTAAGCTTTGAGGAGAAATAGTGGAGAAGCGTGTTTCTCG
GCGATCGAAGAAAGACGGGAAACGAGTTTCTCAACGGTTTCGCACACAAA
GCTGCTTGATGATCTTTGCGCAGATTGGGACAAGCTGCGCGCATGCGTCA
AAAATGCGTGTTTAAATGTCTCatcttttcatttcaaaatcctCGCTCTT
GCAAAAAGTTTGTAGTTAAGTTAAGCTAATcacttctatttctttttttg
ctttcaTGTAAAAACGAGACGAATCGACATCAGCATTGGAGAAAACAACG
GGATTCAACGACATTGTTCGATATGGTTCATGCACGGCTATCCTCATTAC
AAGCAGCGAAGTGGGCCACTTTTACGGTTACACGCGATCTTTAATGAATC
CAGATTACGGAACAACGCTGTTTTTAACGTACTTTGTGTATagctttttt
attatttacaaAGGGAGGACCTTTAAACTCCGGAGGTCGGGGTGACTGAT
GCACTCGGTTCGGAGATAATGTTTCCTCCAGAAACAGCCAGTGGGGGTTT
TGCGCTACCTGCTTAGTCACCGTTAGTACTAATATATCCCTTTTTTATTG
TAATAATGAATAATATTaattttatcgatatttttattctgaCCGGTCTT
GCGGCACTATTCACATGTAAACTATTCAATTTTTCACCTGATAATTGTTT
CACACATTGCTGTTGGCACGATTGCAGAAGGATCTATTACATTTATCCTG
TTATTCTTCTAACATTTTGCATGCTTATTGGAAAGAACGTACATTCAATG
GATAGTATATTTCAAATTCGTTCTAGTTATCAAATTATGGTGCGTGATGT
TCAAAAGATACAACAAATGATTGCTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066022-exon-scaffold_448-1491911889:604489..606917 | TCONS_00066022-exon-scaffold_448-1491911889:604489..606917 | Clytia hemisphaerica | exon |
| TCONS_00066022-exon-scaffold_448-1510915933:604489..606917 | TCONS_00066022-exon-scaffold_448-1510915933:604489..606917 | Clytia hemisphaerica | exon |
| TCONS_00066022-exon-scaffold_448-1575043694:604489..606917 | TCONS_00066022-exon-scaffold_448-1575043694:604489..606917 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_448 | supercontig | scaffold_448:604489..606917 . |
Blast
The following BLAST results are available for this feature:
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