TCONS_00066028 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066028
Unique NameTCONS_00066028
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066028 ID=TCONS_00066028|Name=TCONS_00066028|organism=Clytia hemisphaerica|type=transcript|length=550bp
atcccctggtctTGCTCTTGGGAATAATGTAGATGCTATTTTTAAAAGAG
AATTCTTCAAACCAGTCAGTCAATTGAAATCAATTGAACTGATCGATCAA
AGCAACCAAACTTGATCGAACTCAATCAAAAAAGCATAGGCAAGCATGTT
TTGCCAGATTTGTTTGCAACTAAGCTAATAATATACATCTTTTTAAATTA
TACTGTTAGCATAGAAAAAGCTTAGATTTAAATATTAGTAATGGCTCTCA
TTTCCACAAAAGGAACTCTGATAAGGCTTTTATTTGGTGCCATGTCACTT
GTTCGACAGTGCGCTTGTTCGACAGCTTAGTTGTTcgacattttgatgaa
attgtcgaacaagtgggcaGTCTAACAAGTAACAAGTGAGCGCTCAGTTG
TTCGACAGCCCAGNgttttatatggatgaaattgcttgagaattatgttt
ttgataattctttgtgttttccaaacattttcctctgcaatgacattgat
tatagttaacctgtcatcactgacctgtgacctgtgacctgcgacctgtg
Run BLAST on NCBI

transcript from alignment at scaffold_448:831605..832154

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066028 ID=TCONS_00066028|Name=TCONS_00066028|organism=Clytia hemisphaerica|type=transcript|length=550bp|location=Sequence derived from alignment at scaffold_448:831605..832154 (Clytia hemisphaerica)
cacaggtcgcaggtcacaggtcacaggtcagtgatgacaggttaactata
atcaatgtcattgcagaggaaaatgtttggaaaacacaaagaattatcaa
aaacataattctcaagcaatttcatccatataaaacNCTGGGCTGTCGAA
CAACTGAGCGCTCACTTGTTACTTGTTAGACtgcccacttgttcgacaat
ttcatcaaaatgtcgAACAACTAAGCTGTCGAACAAGCGCACTGTCGAAC
AAGTGACATGGCACCAAATAAAAGCCTTATCAGAGTTCCTTTTGTGGAAA
TGAGAGCCATTACTAATATTTAAATCTAAGCTTTTTCTATGCTAACAGTA
TAATTTAAAAAGATGTATATTATTAGCTTAGTTGCAAACAAATCTGGCAA
AACATGCTTGCCTATGCTTTTTTGATTGAGTTCGATCAAGTTTGGTTGCT
TTGATCGATCAGTTCAATTGATTTCAATTGACTGACTGGTTTGAAGAATT
CTCTTTTAAAAATAGCATCTACATTATTCCCAAGAGCAagaccaggggat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041350XLOC_041350Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066028-exon-scaffold_448-1491911889:831605..832154TCONS_00066028-exon-scaffold_448-1491911889:831605..832154Clytia hemisphaericaexon
TCONS_00066028-exon-scaffold_448-1510915933:831605..832154TCONS_00066028-exon-scaffold_448-1510915933:831605..832154Clytia hemisphaericaexon
TCONS_00066028-exon-scaffold_448-1575043694:831605..832154TCONS_00066028-exon-scaffold_448-1575043694:831605..832154Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_448supercontigscaffold_448:831605..832154 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.08812	0.959369	1.84065	1.51725	1.8428	0.886962	1.82972	1.75315	2.15691	0.910597	0.954624	0.860373	0.938257	0.725788	0.649853	0.384393	0.312411	0.640422	0.77418	0.115732	2.25949	1.27919	0	0.650715	1.22874	1.71199	2.36088	1.62711	2.56338	2.47193
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066028 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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