|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066029 ID=TCONS_00066029|Name=TCONS_00066029|organism=Clytia hemisphaerica|type=transcript|length=2053bp
NAAGAACTGGCGGGTGAGACCACCAGCATCAATGCCaggttgattttcaa
atttgattctaaTTGGTGTCTCAGGATCAAAGTTGGGATTTTTGTAATAT
GAAAAGCAATCTTCAAATAACGTGTCCTCGTTCACCGCCAATGTGTGTCT
ACTTCGTGAAGGATTGGTAGTAATATTTGGGGCAGAGTTATCATTTCTTT
CCTCCTCAGGTGTAGAGGTGTTATTGTTAAAATCTGCAATGGCATTGGCA
GCCTCATTTATGTCTGAGTTACTGTTTAGAAGTTCATTGAGGGTATCTGC
TGGAACATCTGGGAAAATCTCTGATAAATTAACATCTCTGCTACATCCTG
GTTGGTTTGAGGTTGTTGAAATTGCAGGTCGTGGCCTCAAAACCGGTGGT
AAAaagtcatcatcatcatctgaaGATGTTTCATCATCAACTACAGGTTT
TCTGTTCAATCTAACATAAAGCTTCCCAGTACCCTCAATCTTTTTAATTT
GCTTGTAATCAAAGCTGAATGTTTCTTCAACAACTGGGGTATATATACGA
CCCAGATCTCTTTTAACAAACTCAAAGTCTGTTTTTTTTATGTTGGGAAT
TCGGTTTCTCAGAACATTACAGATTTTTTCCCTTATATCATCTTCTTTGA
AGTCGCTTTTCAATTCGACAAATACTTGTTTTGTGTGAACACTTGCCTGG
GTTATGGCATAGTCATCAACATAACCGGTAACTGGATCACAAGAAGTTTC
TTCTGGGTTAAATGGGTGCAACAAACAAATTTCATGGGTTGTAATTTTTA
TTTCCACCTTCTTACGCTTTCCTGCTCTGTTCGGGTGGTTGGGAGTAGGA
ATAGAACACGATCGTGCTGAATTTCGAATTAAGCTTTGGGTCCGATCAAT
CAAGGCTGACGCTGTTGCTCGAATAGGGCGTGGATAGGATGAAGGCCCTG
CTTGTGAAGGTGATGGAGCAGGTGTTGATCCCTGTAGGCGAGGTGCTGAA
GTAGGTGTTGATCCCTGATTGGGAGTTTGTGAAGCTGAGCCACCAGCTGT
TTGTGGTGATAATGCTGTTATAACTTCTTGGATTACTTGCTGCCGTAAAG
CATCCATTTTTTATTAACAAAAAGCTGGAATAAAGTGAGAAACCATTCTC
AAAATACCAGACCGCCTTAATTGAACAGTTcgacaatcgaactaatcgaa
ctcaaTCAAACTTAGTCAAACAACAAAAGTTCAATTAAATTGattaatcg
aactaattgaaAATCGTAATAATTGTGAGAATtcgattaccttaagggaa
ctaattttcgctttattcgcggttttttggcaaaagattTACGAaggaaa
ataaaaggaaaataggaaaataaaagaaatttgtcccaaaaaggggaaaa
tcgtgaaaattaaTTCTTGCGAAATgcggttttttcaatttttttttcga
ccgcgaaagtTAGCTccagcgaaaattagttcccttaaaggtAGTTCGAT
TTTAATCGTTTCGAGTTTGACAAAGTTTGATAACATAatttgttcgacaa
gttcgacAAATATATTAGTCCGACCTGGTCCGACAAAGTTAGATAACAAA
ATACATTTTCGAAGTCTTTTTATGCAATTTTCACATAAATTTTTGTCTTT
CAATAGCCGCCaaatagcaaaaaaattattttgcggTCGGCCGCATGACA
AAGCTTTTGcctcacccgcattccggaaacacaacatttttttatatttt
cgccTAAGTAGATAAAATGTAAACAGTCTAGGATTATACTAAATTAAGGG
ACATCCCTAAATTAAGGGCGTCCCTAAATTAAAGGACATTGATTAAAATC
ATGTCCCTAAATTTAAGGACAGTCTCTAAATAAAGGGACATaaattttca
aacctcaatTTTTTGACAACCATTCATCAGCGGGCCTCCATTTTTACAAT
GCTTCTCCACTAGCCCTACGAGCTTGCAAAATATGAAATCCCAACAAAGT
CGAGagccggttagtgtaaaacgcaggtcacaggtcgcaggtcacaggtc
aca Run BLAST on NCBI protein sequence of TCONS_00066029-protein >TCONS_00066029-protein ID=TCONS_00066029-protein|Name=TCONS_00066029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
MDALRQQVIQEVITALSPQTAGGSASQTPNQGSTPTSAPRLQGSTPAPSP
SQAGPSSYPRPIRATASALIDRTQSLIRNSARSCSIPTPNHPNRAGKRKK
VEIKITTHEICLLHPFNPEETSCDPVTGYVDDYAITQASVHTKQVFVELK
SDFKEDDIREKICNVLRNRIPNIKKTDFEFVKRDLGRIYTPVVEETFSFD
YKQIKKIEGTGKLYVRLNRKPVVDDETSSDDDDDFLPPVLRPRPAISTTS
NQPGCSRDVNLSEIFPDVPADTLNELLNSNSDINEAANAIADFNNNTSTP
EEERNDNSAPNITTNPSRSRHTLAVNEDTLFEDCFSYYKNPNFDPETPIR
IKFENQPGIDAGGLTRQFX Run BLAST on NCBI transcript from alignment at scaffold_448:834136..836188 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066029 ID=TCONS_00066029|Name=TCONS_00066029|organism=Clytia hemisphaerica|type=transcript|length=2053bp|location=Sequence derived from alignment at scaffold_448:834136..836188 (Clytia hemisphaerica)
tgtgacctgtgacctgcgacctgtgacctgcgttttacactaaccggctC
TCGACTTTGTTGGGATTTCATATTTTGCAAGCTCGTAGGGCTAGTGGAGA
AGCATTGTAAAAATGGAGGCCCGCTGATGAATGGTTGTCAAAAAattgag
gtttgaaaatttATGTCCCTTTATTTAGAGACTGTCCTTAAATTTAGGGA
CATGATTTTAATCAATGTCCTTTAATTTAGGGACGCCCTTAATTTAGGGA
TGTCCCTTAATTTAGTATAATCCTAGACTGTTTACATTTTATCTACTTAg
gcgaaaatataaaaaaatgttgtgtttccggaatgcgggtgaggCAAAAG
CTTTGTCATGCGGCCGAccgcaaaataatttttttgctatttGGCGGCTA
TTGAAAGACAAAAATTTATGTGAAAATTGCATAAAAAGACTTCGAAAATG
TATTTTGTTATCTAACTTTGTCGGACCAGGTCGGACTAATATATTTgtcg
aacttgtcgaacaaatTATGTTATCAAACTTTGTCAAACTCGAAACGATT
AAAATCGAACTacctttaagggaactaattttcgctggAGCTAactttcg
cggtcgaaaaaaaaattgaaaaaaccgcATTTCGCAAGAAttaattttca
cgattttcccctttttgggacaaatttcttttattttcctattttccttt
tattttcctTCGTAaatcttttgccaaaaaaccgcgaataaagcgaaaat
tagttcccttaaggtaatcgaATTCTCACAATTATTACGATTttcaatta
gttcgattaatCAATTTAATTGAACTTTTGTTGTTTGACTAAGTTTGAtt
gagttcgattagttcgattgtcgAACTGTTCAATTAAGGCGGTCTGGTAT
TTTGAGAATGGTTTCTCACTTTATTCCAGCTTTTTGTTAATAAAAAATGG
ATGCTTTACGGCAGCAAGTAATCCAAGAAGTTATAACAGCATTATCACCA
CAAACAGCTGGTGGCTCAGCTTCACAAACTCCCAATCAGGGATCAACACC
TACTTCAGCACCTCGCCTACAGGGATCAACACCTGCTCCATCACCTTCAC
AAGCAGGGCCTTCATCCTATCCACGCCCTATTCGAGCAACAGCGTCAGCC
TTGATTGATCGGACCCAAAGCTTAATTCGAAATTCAGCACGATCGTGTTC
TATTCCTACTCCCAACCACCCGAACAGAGCAGGAAAGCGTAAGAAGGTGG
AAATAAAAATTACAACCCATGAAATTTGTTTGTTGCACCCATTTAACCCA
GAAGAAACTTCTTGTGATCCAGTTACCGGTTATGTTGATGACTATGCCAT
AACCCAGGCAAGTGTTCACACAAAACAAGTATTTGTCGAATTGAAAAGCG
ACTTCAAAGAAGATGATATAAGGGAAAAAATCTGTAATGTTCTGAGAAAC
CGAATTCCCAACATAAAAAAAACAGACTTTGAGTTTGTTAAAAGAGATCT
GGGTCGTATATATACCCCAGTTGTTGAAGAAACATTCAGCTTTGATTACA
AGCAAATTAAAAAGATTGAGGGTACTGGGAAGCTTTATGTTAGATTGAAC
AGAAAACCTGTAGTTGATGATGAAACATCttcagatgatgatgatgactt
TTTACCACCGGTTTTGAGGCCACGACCTGCAATTTCAACAACCTCAAACC
AACCAGGATGTAGCAGAGATGTTAATTTATCAGAGATTTTCCCAGATGTT
CCAGCAGATACCCTCAATGAACTTCTAAACAGTAACTCAGACATAAATGA
GGCTGCCAATGCCATTGCAGATTTTAACAATAACACCTCTACACCTGAGG
AGGAAAGAAATGATAACTCTGCCCCAAATATTACTACCAATCCTTCACGA
AGTAGACACACATTGGCGGTGAACGAGGACACGTTATTTGAAGATTGCTT
TTCATATTACAAAAATCCCAACTTTGATCCTGAGACACCAAttagaatca
aatttgaaaatcaacctGGCATTGATGCTGGTGGTCTCACCCGCCAGTTC
TTN Coding sequence (CDS) from alignment at scaffold_448:834136..836188 >TCONS_00066029 ID=TCONS_00066029|Name=TCONS_00066029|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_448:834136..836188 (Clytia hemisphaerica)
ATGGATGCTTTACGGCAGCAAGTAATCCAAGAAGTTATAACAGCATTATC
ACCACAAACAGCTGGTGGCTCAGCTTCACAAACTCCCAATCAGGGATCAA
CACCTACTTCAGCACCTCGCCTACAGGGATCAACACCTGCTCCATCACCT
TCACAAGCAGGGCCTTCATCCTATCCACGCCCTATTCGAGCAACAGCGTC
AGCCTTGATTGATCGGACCCAAAGCTTAATTCGAAATTCAGCACGATCGT
GTTCTATTCCTACTCCCAACCACCCGAACAGAGCAGGAAAGCGTAAGAAG
GTGGAAATAAAAATTACAACCCATGAAATTTGTTTGTTGCACCCATTTAA
CCCAGAAGAAACTTCTTGTGATCCAGTTACCGGTTATGTTGATGACTATG
CCATAACCCAGGCAAGTGTTCACACAAAACAAGTATTTGTCGAATTGAAA
AGCGACTTCAAAGAAGATGATATAAGGGAAAAAATCTGTAATGTTCTGAG
AAACCGAATTCCCAACATAAAAAAAACAGACTTTGAGTTTGTTAAAAGAG
ATCTGGGTCGTATATATACCCCAGTTGTTGAAGAAACATTCAGCTTTGAT
TACAAGCAAATTAAAAAGATTGAGGGTACTGGGAAGCTTTATGTTAGATT
GAACAGAAAACCTGTAGTTGATGATGAAACATCttcagatgatgatgatg
acttTTTACCACCGGTTTTGAGGCCACGACCTGCAATTTCAACAACCTCA
AACCAACCAGGATGTAGCAGAGATGTTAATTTATCAGAGATTTTCCCAGA
TGTTCCAGCAGATACCCTCAATGAACTTCTAAACAGTAACTCAGACATAA
ATGAGGCTGCCAATGCCATTGCAGATTTTAACAATAACACCTCTACACCT
GAGGAGGAAAGAAATGATAACTCTGCCCCAAATATTACTACCAATCCTTC
ACGAAGTAGACACACATTGGCGGTGAACGAGGACACGTTATTTGAAGATT
GCTTTTCATATTACAAAAATCCCAACTTTGATCCTGAGACACCAAttaga
atcaaatttgaaaatcaacctGGCATTGATGCTGGTGGTCTCACCCGCCA
GTTCTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066029-exon-scaffold_448-1491911889:834136..836188 | TCONS_00066029-exon-scaffold_448-1491911889:834136..836188 | Clytia hemisphaerica | exon |
| TCONS_00066029-exon-scaffold_448-1510915933:834136..836188 | TCONS_00066029-exon-scaffold_448-1510915933:834136..836188 | Clytia hemisphaerica | exon |
| TCONS_00066029-exon-scaffold_448-1575043694:834136..836188 | TCONS_00066029-exon-scaffold_448-1575043694:834136..836188 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_448 | supercontig | scaffold_448:834136..836188 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
|
