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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066041 ID=TCONS_00066041|Name=TCONS_00066041|organism=Clytia hemisphaerica|type=transcript|length=3033bp
CTCAAATAACTCTGCCTTTTGATTGATAACTTAGATAGTATCGGAGAGAG
AAAAAACATATATCTTGTACTAAAATGAAACTACTCTCTAAAGTAAGTTA
GAGACTTATGAGATGGATAGACAGAAACGGCAAAGAAATGATATTGATGA
GTTTCCTTACAGAAGACCAAAACTGGACGACGATCAGGAGACATCCTGGG
ATGCTCAGTTGGTGACGTCAGAATCCAAATCACCTGAAATGAATGAAAGA
AATCAATCGGAACAAAATCTACAGTTTGGAGATATATTTTCAGCATGGCA
ACAGCAAAAATCTGAAAACAATGGCTCCAGCGTAAAAGAAGTTGATAGCG
ATAAAGCACCATACATCGTATTGGTTGGCAATGTAGGAAGTGGGAAATCA
ACCATCGTTGAAAAACTAGCAGGTGTTGATGGTCGAAGCTCTTCATCAGC
ATCCAGTGCAACCAGATCTGCTGAATATTTCTTGACTCCTGATCAAAGTC
TTCTCATTGCTGACACTCCAGGAACCAATCCTCGAAAGGATAAACTGGAA
CATAATAATGAGATTGCAGCTGCATTGAGTTATCGAGAGGTTTCCAAATT
CATAGTAGTTGTGAAAGCAAGTCTACGTATGGACCAGACACTGGATGATA
TAAAGCAGTATTATGATCGATTTAATGCTCTCCCTGAAGATCTTGTCGGT
GTTTTGGTGACTCATATGGATCTCCACAAAGAATGGGATGAGGAAGAAAT
ATTGGAAGCTATTGACGAGGACTTCGAAATTACAGACGTCGTTTTCTCAG
ATCGCCAAAAAAAGGGTTTCGACCTTTGCAAAGATGTTTTAAGAACATGC
AGAAAAACTTTTGTAATAGATATGCAGAGTGACCTGTTTTCAAGACTTTT
CAGGTTTAAGGATAGTAAtcgaaaaattctaaaagtcaCAAATGACTTCG
TTAAACGATTTAAATCactcaaaaaaagttttgaggGTCAGAGAAAGAAC
TTCGATGAAGCAGATCGGTGTCATCTTGATTGCGAGTTCTGGGCACTGTT
CAAAACACATCTTACCGAAACAGCAAAACAGGACATGGTAAAtgaattga
atttcaattttgagaGGGAGACGAAAGATATGGAGGAAGGCTATCTGATG
AACATGGTCAATCAAACTAACGCCGCAATGAATGACATACAAATTCGAAT
CGCTCGAAATCAAGATCCCTATGCATCCACCAAAAATTGCCCTCATTGCG
GTAGGATTTGTGAAAATCCAAAAGCTCAAACATGTGGTAAACCAAAGCGT
ATTGAGCTGTCAACAAATTCTCCATGTACAATGGCACATTTTACATTTAA
AATCATTGACTACAGAAAAGTCGAAatacagaaaaaaagttttggtgGTC
AATTTCAGGATAACAAGACAGGATGTGGTCAAAAAATCAGCTGGAATGAA
ATGATGAAAGTTaatcatcaaaaaatcacaCAGATACAAAATCAGGGTCC
AGTAAAACAACCTGAATCTAATCAGCGTCCAGTGGAACAACCTAAATCTG
ACCATCACGCAGATACAAAAAGCAGACAAAAGACCAAGCCCAAAAATCAA
CAGCCATTAAGTACAAGTGACACACAACGCATCAATCATGGTAGATCTCT
ACCAAAGAAGAATCCTACAAAGCATACTCATACAGAACCACCCAGATATG
TACACCAAAAAGAAGAGGCTCCGAATCAATCTTCACAACCCAACAAAGGT
GGAAGACAGAGATCAAACAACGACTTTAACCAAAACAATAAGTCGGCGAA
GTACCACCCATATGACTATTCAGAAGAGGCTCCGAATCAATCTTCACAAC
CCAACAAAGGTGAAAGAGGTATTTCAAACAACGACTCAAACCAAAACAAT
AAGTCGAGGAAATATCCACCAAAGGACTATCCACAAGAGACTCTGAATCA
ATCTTCACAACCCAGCAAAGGTGAAAGAGGCAGATCAAACAACGACTCAA
ACCAAAACAATAGATCGAAGAAGTACCCACCAAAGGACAAACCAGAAGAT
GATGGCACAGTACCCTATCCTACACATACGCCTCCAAAAGGAGGTTACCA
ATACCAACGAGTAAGAGAAGATAAACCGTCACATANCCTACACATACGCC
TCCAAAAGGAGGTTACCAATACCAACGAGTAAGAGAAGACAAACCGTCAC
ATCCTGAAAAGTTAAAGAATCCAGCTAAGGGGGGACATAAAGAGAGAAAT
CGAGGAAAAACCTCACATTCAGCCTCAATGCAGAAATCTACCGATCCAAA
TCAACCAGGAGAGATAACCCAAGCTATATCAAGTGCAGATTACAAAAGTG
AGCCAGACACCACCTTACTGCTCAAAGAGCCGAATGAAAGGAGTATACGC
CACCttttgaaaagacatttttacaaaagtttcaaaagcattAGATATTG
CATTCCCACGTTTTTTGTTACTGTTAAAATCCTACAAAGAATTAACGAGC
ACGTATTCAAGACATGCTTTGGAGATAAGAACAGAGAGTATAAGAAGCAC
GATCACCTCATCCCAAAACAGCCAAAAGAACAAAACATCGAATATGTTTA
AATATGTAAAATTAATGAATTATCATAATTATAGCGATTTAAGTTAAAGG
TCacattggatttttttatacTCTTGAGTAAAGTGATTGAGTGAGTCCCA
GGGGTGAGGGGGTGCTGGGTTTACAGGGTaatagtttttcaatttttctt
tcaacccttacagggactgccCAGGTTTCAAAAAGACATCTTTAAGGGCG
GCACTCGCAcgtacccttcacttgcctaagtacccctccccccccaGTGA
GTGAGTGAGCGAGCAAATTAAAGTACGTGATTAGGCTGTAAAAAACAACA
CCGTAATTGTAAGTTTATCAATTATGTAAGATTATCTTTATTTcagtttt
tatttaaatattgaAACCTTAATGCAGAATGTTCCGAGATAAAAACTCTT
TCCAAAAggtatttttattaatttcgttttttt Run BLAST on NCBI transcript from alignment at scaffold_449:35669..39251- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066041 ID=TCONS_00066041|Name=TCONS_00066041|organism=Clytia hemisphaerica|type=transcript|length=3583bp|location=Sequence derived from alignment at scaffold_449:35669..39251- (Clytia hemisphaerica)
CTCAAATAACTCTGCCTTTTGATTGATAACTTAGATAGTATCGGAGAGAG
AAAAAACATATATCTTGTACTAAAATGAAACTACTCTCTAAAGTAAGTTA
GAGACTTATGAGATGGATAGACAGAAACGGCAAAGAAATGATATTGATGA
GTTTCCTTACAGAAGACCAAAACTGGACGACGATCAGGAGACATCCTGGG
ATGCTCAGTTGGTGACGTCAGAATCCAAATCACCTGAAATGAATGAAAGA
AATCAATCGGAACAAAATCTACAGTTTGGAGATATATTTTCAGCATGGCA
ACAGCAAAAATCTGGTAAGAAATCTGTTGTACTTCTAAAATGATTTGTTT
GAAACTCATTTGATGACGAGATCTCTGCTGTTTTTTTCTTATCCAAATCC
TTAAAGAATTCAGTTGCCGATAAACATATCTACGCGTAATTTTCGGCTTT
CATTTTATATGAAAAGATCCGGTATCCAATACCAAGGGATAAAATAAAAT
CTTATCAATATCATTGATTTTGTTTCTCTAGAAAACAATGGCTCCAGCGT
AAAAGAAGTTGATAGCGATAAAGCACCATACATCGTATTGGTTGGCAATG
TAGGAAGTGGGAAATCAACCATCGTTGAAAAACTAGCAGGTGTTGATGGT
CGAAGCTCTTCATCAGCATCCAGTGCAACCAGATCTGCTGAATATTTCTT
GACTCCTGATCAAAGTCTTCTCATTGCTGACACTCCAGGAACCAATCCTC
GAAAGGATAAACTGGAACATAATAATGAGATTGCAGCTGCATTGAGTTAT
CGAGAGGTTTCCAAATTCATAGTAGTTGTGAAAGCAAGTCTACGTATGGA
CCAGACACTGGATGATATAAAGCAGTATTATGATCGATTTAATGCTCTCC
CTGAAGATCTTGTCGGTGTTTTGGTGACTCATATGGATCTCCACAAAGAA
TGGGATGAGGAAGAAATATTGGAAGCTATTGACGAGGACTTCGAAATTAC
AGACGTCGTTTTCTCAGATCGCCAAAAAAAGGGTTTCGACCTTTGCAAAG
ATGTTTTAAGAACATGCAGAAAAACTTTTGTAATAGATATGCAGAGTGAC
CTGTTTTCAAGACTTTTCAGGTTTAAGGATAGTAATCGAAAAATTCTAAA
AGTCACAAATGACTTCGTTAAACGATTTAAATCACTCAAAAAAAGTTTTG
AGGGTCAGAGAAAGAACTTCGATGAAGCAGATCGGTGTCATCTTGATTGC
GAGTTCTGGGCACTGTTCAAAACACATCTTACCGAAACAGCAAAACAGGA
CATGGTAAATGAATTGAATTTCAATTTTGAGAGGGAGACGAAAGATATGG
AGGAAGGCTATCTGATGAACATGGTCAATCAAACTAACGCCGCAATGAAT
GACATACAAATTCGAATCGCTCGAAATCAAGATCCCTATGCATCCACCAA
AAATTGCCCTCATTGCGGTAGGATTTGTGAAAATCCAAAAGCTCAAACAT
GTGGTAAACCAAAGCGTATTGAGCTGTCAACAAATTCTCCATGTACAATG
GCACATTTTACATTTAAAATCATTGACTACAGAAAAGTCGAAATACAGAA
AAAAAGTTTTGGTGGTCAATTTCAGGATAACAAGACAGGATGTGGTCAAA
AAATCAGCTGGAATGAAATGATGAAAGTTAATCATCAAAAAATCACACAG
ATACAAAATCAGGGTCCAGTAAAACAACCTGAATCTAATCAGCGTCCAGT
GGAACAACCTAAATCTGACCATCACGCAGATACAAAAAGCAGACAAAAGA
CCAAGCCCAAAAATCAACAGCCATTAAGTACAAGTGACACACAACGCATC
AATCATGGTAGATCTCTACCAAAGAAGAATCCTACAAAGCATACTCATAC
AGAACCACCCAGATATGTACACCAAAAAGAAGAGGCTCCGAATCAATCTT
CACAACCCAACAAAGGTGGAAGACAGAGATCAAACAACGACTTTAACCAA
AACAATAAGTCGGCGAAGTACCACCCATATGACTATTCAGAAGAGGCTCC
GAATCAATCTTCACAACCCAACAAAGGTGGAAGACAGAGATCAAACAACG
ACTTTAACCAAAATAATAAGTCGGCGAAGTACCACCCATATGACTATTCA
GAAGAGGCTCCGAATCAATCTTCACAACCCAACAAAGGTGGAAGACAGAA
ACCAAACAACGACTCAAACCAAAACAATAAGTCGGCGAAATACCACCCAT
ATGACTATCCAGAAGAGACTCTGAACCAATTTACACAACCCAACAAAGGT
GAAAGACAGAAACCAAACAACGACTCAAACCAAAACAATAAGTCGGCGAA
ATACCACCCATATGACTATCCAGAAGAGACTCTGAACCAATTTACACAAC
CCAGCAAAGGTGAAAGAGGTATTTCAAACAACGACTCAAACCAAAACAAT
AAGTCGAGGAAATATCCACCAAAGGACTATCCACAAGAGACTCTGAATCA
ATCTTCACAACCCAGCAAAGGTGAAAGAGGCAGATCAAACAACGACTCAA
ACCAAAACAATAGATCGAAGAAGTACCCACCAAAGGACAAACCAGAAGAT
GATGGCACAGTACCCTATCCTACACATACGCCTCCAAAAGGAGGTTACCA
ATACCAACGAGTAAGAGAAGATAAACCGTCACATANCCTACACATACGCC
TCCAAAAGGAGGTTACCAATACCAACGAGTAAGAGAAGACAAACCGTCAC
ATCCTGAAAAGTTAAAGAATCCAGCTAAGGGGGGACATAAAGAGAGAAAT
CGAGGAAAAACCTCACATTCAGCCTCAATGCAGAAATCTACCGATCCAAA
TCAACCAGGAGAGATAACCCAAGCTATATCAAGTGCAGATTACAAAAGTG
AGCCAGACACCACCTTACTGCTCAAAGAGCCGAATGAAAGGAGTATACGC
CACCTTTTGAAAAGACATTTTTACAAAAGTTTCAAAAGCATTAGATATTG
CATTCCCACGTTTTTTGTTACTGTTAAAATCCTACAAAGAATTAACGAGC
ACGTATTCAAGACATGCTTTGGAGATAAGAACAGAGAGTATAAGAAGCAC
GATCACCTCATCCCAAAACAGCCAAAAGAACAAAACATCGAATATGTTTA
AATATGTAAAATTAATGAATTATCATAATTATAGCGATTTAAGTTAAAGG
TCACATTGGATTTTTTTATACTCTTGAGTAAAGTGATTGAGTGAGTCCCA
GGGGTGAGGGGGTGCTGGGTTTACAGGGTAATAGTTTTTCAATTTTTCTT
TCAACCCTTACAGGGACTGCCCAGGTTTCAAAAAGACATCTTTAAGGGCG
GCACTCGCACGTACCCTTCACTTGCCTAAGTACCCCTCCCCCCCCAGTGA
GTGAGTGAGCGAGCAAATTAAAGTACGTGATTAGGCTGTAAAAAACAACA
CCGTAATTGTAAGTTTATCAATTATGTAAGATTATCTTTATTTCAGTTTT
TATTTAAATATTGAAACCTTAATGCAGAATGTTCCGAGATAAAAACTCTT
TCCAAAAGGTATTTTTATTAATTTCGTTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066041-exon-scaffold_449-1575043694:38938..39251 | TCONS_00066041-exon-scaffold_449-1575043694:38938..39251 | Clytia hemisphaerica | exon |
| TCONS_00066041-exon-scaffold_449-1575043694:37176..38720 | TCONS_00066041-exon-scaffold_449-1575043694:37176..38720 | Clytia hemisphaerica | exon |
| TCONS_00066041-exon-scaffold_449-1575043694:35669..36842 | TCONS_00066041-exon-scaffold_449-1575043694:35669..36842 | Clytia hemisphaerica | exon |
| TCONS_00066041-exon-scaffold_449-1510915933:38938..39251 | TCONS_00066041-exon-scaffold_449-1510915933:38938..39251 | Clytia hemisphaerica | exon |
| TCONS_00066041-exon-scaffold_449-1510915933:37176..38720 | TCONS_00066041-exon-scaffold_449-1510915933:37176..38720 | Clytia hemisphaerica | exon |
| TCONS_00066041-exon-scaffold_449-1510915933:35669..36842 | TCONS_00066041-exon-scaffold_449-1510915933:35669..36842 | Clytia hemisphaerica | exon |
| TCONS_00066041-exon-scaffold_449-1491911889:38938..39251 | TCONS_00066041-exon-scaffold_449-1491911889:38938..39251 | Clytia hemisphaerica | exon |
| TCONS_00066041-exon-scaffold_449-1491911889:37176..38720 | TCONS_00066041-exon-scaffold_449-1491911889:37176..38720 | Clytia hemisphaerica | exon |
| TCONS_00066041-exon-scaffold_449-1491911889:35669..36842 | TCONS_00066041-exon-scaffold_449-1491911889:35669..36842 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_449 | supercontig | scaffold_449:35669..39251 - |
Blast
The following BLAST results are available for this feature:
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