TCONS_00066044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066044
Unique NameTCONS_00066044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length616

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066044 ID=TCONS_00066044|Name=TCONS_00066044|organism=Clytia hemisphaerica|type=transcript|length=616bp
ATTAAAGTCGGTATACAGGTTAGACTTGAGACCACGAAGGAGAGAAATTG
AGGCGAGGAGGATTCGAACCTGTTTTTGCGCTAATCTTCGCTGTTTCTTT
TAgtcaaattagaaaaaaagtcaaaatgtcaGCACCTTCGGGTGTTTCAT
ACAATGATACAGAAGGTGCAGCTCCACAAGCTTTAGGTCATTCCATCTAT
GATGATGGATCATCATCCTCAAATATGTCAGCTCAAAGTGGTCCAGCAGC
AGTGGCTTCATTTCTTGCCAATCAGTTTGGGAAAAAGTAAGGAaattttt
tgtaactttttcttCAGTAATTAAGTTTGGGAGCAGTGTGAGATAAAAAA
AAAGGATAgacaatatgccttcttacctgtctttaaaaatataaataaaa
gtaatcacagaaaaggacgcgaaaaaaaaaagacataagtgtgagaacag
agtaatcaaactcgttagaaaaagtaccattagaagtcataaaaaatcaa
cctgaataaattcANgttagaaaaagtaccattagaagtcttaaaaaatc
aacctgaatagatgcaatcgaaattccagagaacttcataattccccaaa
caacattacattacta
Run BLAST on NCBI

transcript from alignment at scaffold_449:2248..2863

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066044 ID=TCONS_00066044|Name=TCONS_00066044|organism=Clytia hemisphaerica|type=transcript|length=616bp|location=Sequence derived from alignment at scaffold_449:2248..2863 (Clytia hemisphaerica)
tagtaatgtaatgttgtttggggaattatgaagttctctggaatttcgat
tgcatctattcaggttgattttttaagacttctaatggtactttttctaa
cNTgaatttattcaggttgattttttatgacttctaatggtactttttct
aacgagtttgattactctgttctcacacttatgtcttttttttttcgcgt
ccttttctgtgattacttttatttatatttttaaagacaggtaagaaggc
atattgtcTATCCTTTTTTTTTATCTCACACTGCTCCCAAACTTAATTAC
TGaagaaaaagttacaaaaaattTCCTTACTTTTTCCCAAACTGATTGGC
AAGAAATGAAGCCACTGCTGCTGGACCACTTTGAGCTGACATATTTGAGG
ATGATGATCCATCATCATAGATGGAATGACCTAAAGCTTGTGGAGCTGCA
CCTTCTGTATCATTGTATGAAACACCCGAAGGTGCtgacattttgacttt
ttttctaatttgacTAAAAGAAACAGCGAAGATTAGCGCAAAAACAGGTT
CGAATCCTCCTCGCCTCAATTTCTCTCCTTCGTGGTCTCAAGTCTAACCT
GTATACCGACTTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041361XLOC_041361Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066044-exon-scaffold_449-1491911889:2248..2863TCONS_00066044-exon-scaffold_449-1491911889:2248..2863Clytia hemisphaericaexon
TCONS_00066044-exon-scaffold_449-1510915933:2248..2863TCONS_00066044-exon-scaffold_449-1510915933:2248..2863Clytia hemisphaericaexon
TCONS_00066044-exon-scaffold_449-1575043694:2248..2863TCONS_00066044-exon-scaffold_449-1575043694:2248..2863Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_449supercontigscaffold_449:2248..2863 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.7764	19.6889	21.7286	29.0663	29.0884	21.692	22.9261	27.9866	18.7707	28.2333	21.8539	18.8633	16.2018	16.5263	21.2021	24.3944	18.2309	17.8617	12.3729	16.1027	19.9437	20.2045	19.0927	23.7488	10.3717	14.9383	26.3677	18.1592	23.6072	24.0965
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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