TCONS_00066082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066082
Unique NameTCONS_00066082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length629

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066082 ID=TCONS_00066082|Name=TCONS_00066082|organism=Clytia hemisphaerica|type=transcript|length=629bp
aacccgactctgagaaagcacctcgtgggTGAGCGGTCAcggcacacacg
gggttctcaccctctatgacgtgccgttccaagcaattttaccgcgacca
cttcgctgtgacattacttctcgagactacaattcgctgaccGCAATATC
AACGCTTTTCAAGCCATTGGATGTATACGGGCATCTGTATGAAAGCCGAG
GGCGGACAAGCCactgtgattggttgaaaaactcATTTTGGTTGAAACTC
GATTTGAAAATATTCCCTTTACAGAAAAAGGTCTGCGTGGTTGGCATATG
TATACAAGCGTGTGTTTGAAAGCCGAGGGCGGACAAGCCactgtgattgg
ttgaaaaactttgaaacttGATTTCAGAATTATTCCATTATTGAAAAAAG
TCTGCGTGGCTGGCATATGTATACGGGCAAGCAAGCGCCAATGTACCGTC
AATACTTATAAAGAtatctaaattgcttttttcaaaGTAGTCAAGATTAA
CTGAAATTTGCATGATATGATTAATAAATGGTGGAAAAGTCCATCGAAAA
TCtatattttttgtgaaatataaatagaaacgccgcttttaggttaaaaa
CCCAGTAGGTAGGTAAGGTCGTTTTTTTA
Run BLAST on NCBI

transcript from alignment at scaffold_45:252864..253492

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066082 ID=TCONS_00066082|Name=TCONS_00066082|organism=Clytia hemisphaerica|type=transcript|length=629bp|location=Sequence derived from alignment at scaffold_45:252864..253492 (Clytia hemisphaerica)
TAAAAAAACGACCTTACCTACCTACTGGGtttttaacctaaaagcggcgt
ttctatttatatttcacaaaaaatataGATTTTCGATGGACTTTTCCACC
ATTTATTAATCATATCATGCAAATTTCAGTTAATCTTGACTACtttgaaa
aaagcaatttagataTCTTTATAAGTATTGACGGTACATTGGCGCTTGCT
TGCCCGTATACATATGCCAGCCACGCAGACTTTTTTCAATAATGGAATAA
TTCTGAAATCaagtttcaaagtttttcaaccaatcacagtGGCTTGTCCG
CCCTCGGCTTTCAAACACACGCTTGTATACATATGCCAACCACGCAGACC
TTTTTCTGTAAAGGGAATATTTTCAAATCGAGTTTCAACCAAAATgagtt
tttcaaccaatcacagtGGCTTGTCCGCCCTCGGCTTTCATACAGATGCC
CGTATACATCCAATGGCTTGAAAAGCGTTGATATTGCggtcagcgaattg
tagtctcgagaagtaatgtcacagcgaagtggtcgcggtaaaattgcttg
gaacggcacgtcatagagggtgagaaccccgtgtgtgccgTGACCGCTCA
cccacgaggtgctttctcagagtcgggtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041376XLOC_041376Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066082-exon-scaffold_45-1491911889:252864..253492TCONS_00066082-exon-scaffold_45-1491911889:252864..253492Clytia hemisphaericaexon
TCONS_00066082-exon-scaffold_45-1510915933:252864..253492TCONS_00066082-exon-scaffold_45-1510915933:252864..253492Clytia hemisphaericaexon
TCONS_00066082-exon-scaffold_45-1575043694:252864..253492TCONS_00066082-exon-scaffold_45-1575043694:252864..253492Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_45supercontigscaffold_45:252864..253492 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
141.517	200.833	271.762	365.707	53.4358	639.118	217.898	31.4916	48.1317	86.1442	237.274	69.0565	57.4434	109.088	96.6325	49.3157	284.11	71.1937	245.313	30.0631	82.3877	110.269	119.601	88.1865	100.5	83.0102	194.739	367.879	112.438	150.41
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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