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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066101 ID=TCONS_00066101|Name=TCONS_00066101|organism=Clytia hemisphaerica|type=transcript|length=1465bp
aaaatcttttcgatcagttgctttttaaaggtccattctgctgcgcgctg
gaccaaaaaaaattattgaaaaatatccAGAAGCTATCTCATGTCAATTA
AGGGATTTATGTTTCTCCGGATGCTCCATTATACAGATAAAAAGAATGGT
AAAAACATGTTTGGTATCAATTTATTGATGCTTGGAAGAAGTAAGCTACT
CATGTGCTTTTAGCATTATAGACTATATTTAGAGTAAGAAAGTCAAGTGA
AAATCTTATCATCTTTTTCAGGTATTTTTTCGAATTGACTATCCTTACGT
AAAGTTATCGGAACCTCGTAAAATGTTTGTGCACTTGAAGTCATTTAATG
ATCAATGTAatctttccctttttttccaGGAAGTCCCAGGGGAAGAAAGC
AACACCCTAAGAAATACCGATAAAGAAAAACCCTCAGATTCACTAACGAC
CATGCCAAGGACACCAGAAACAGCACCAAGTGACTCCAAAATGACTGTTC
AACTAAGCCAACAGTTGGCCGTTGAGCGTAAACGTAACGATGAGCTCTGT
CTCAGGATTGAACAGTTACAAATTACTTTAGAAAGTGCTGATATTAATTA
CGAGATACTCAAACAAAAATTCATGGAACAATTTCAAACATTCCAAGACg
aattgaatattttgaaacgcAACTATCATAAACATACTGAAAGTGGACCC
AACTCACCGTCCTTGGGTCGACGCCGCCGTGCCATAAACACGGTTTCGGA
ACaacaaaatgaattaaaaatacTGACCAATACAGTGGAAGAAAATACCA
GAAACATTGATGATATTGACTTACGATTACAGATACATGAAAACACTAGA
TATAACGGTCGCATATTATGGAAGATTGACGACTTTCATTCCAGAAGACA
ACAAGTCTTATCAGGTGAACTCCACGCTTTACATAGTGCGCCTTGTTATT
CAAGTGATTATGGATACAAATTTTGTTTACGTGCTTACCTCAATGGCGAT
GGAGTTGGAGAAGGAACACACGTGTCCCTTTTCCTTGTCGTCATGAAGTC
CGACCATGATCGAGTCTTAGAATGGCCTTTCCAAAAGAAAGTGAAGATGA
CACTAATCAATCAACAAAATCGGCGTCGTGATCATACAGAAGTCATGACA
CCGAATAAAGACTCAGCTAGTTTTCAACGGCCAAAAAATGACACCAATGT
TGCGTCTGGTTGTCCGCTTTTTATGGCGCTCGATCGCTTAGATGCAGAAG
GGTTTGTCAAAGAAGATGTATTATTTTTTGATGTTACCGTTGAGTGACTT
CCTATTTTTGTATACCTTTCTTCATTTTGTAAAAcctttgctttttattt
ttatgaaaaacattCTTTTGTATAAAATGTTATATATAAACCATTGTTAT
TTTATGTTATATTTACCAACAAACAGCTTTctttaaaatactaaaaaaat
agttttgtaTCGGAA Run BLAST on NCBI transcript from alignment at scaffold_450:109109..110573+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066101 ID=TCONS_00066101|Name=TCONS_00066101|organism=Clytia hemisphaerica|type=transcript|length=1465bp|location=Sequence derived from alignment at scaffold_450:109109..110573+ (Clytia hemisphaerica)
aaaatcttttcgatcagttgctttttaaaggtccattctgctgcgcgctg
gaccaaaaaaaattattgaaaaatatccAGAAGCTATCTCATGTCAATTA
AGGGATTTATGTTTCTCCGGATGCTCCATTATACAGATAAAAAGAATGGT
AAAAACATGTTTGGTATCAATTTATTGATGCTTGGAAGAAGTAAGCTACT
CATGTGCTTTTAGCATTATAGACTATATTTAGAGTAAGAAAGTCAAGTGA
AAATCTTATCATCTTTTTCAGGTATTTTTTCGAATTGACTATCCTTACGT
AAAGTTATCGGAACCTCGTAAAATGTTTGTGCACTTGAAGTCATTTAATG
ATCAATGTAatctttccctttttttccaGGAAGTCCCAGGGGAAGAAAGC
AACACCCTAAGAAATACCGATAAAGAAAAACCCTCAGATTCACTAACGAC
CATGCCAAGGACACCAGAAACAGCACCAAGTGACTCCAAAATGACTGTTC
AACTAAGCCAACAGTTGGCCGTTGAGCGTAAACGTAACGATGAGCTCTGT
CTCAGGATTGAACAGTTACAAATTACTTTAGAAAGTGCTGATATTAATTA
CGAGATACTCAAACAAAAATTCATGGAACAATTTCAAACATTCCAAGACg
aattgaatattttgaaacgcAACTATCATAAACATACTGAAAGTGGACCC
AACTCACCGTCCTTGGGTCGACGCCGCCGTGCCATAAACACGGTTTCGGA
ACaacaaaatgaattaaaaatacTGACCAATACAGTGGAAGAAAATACCA
GAAACATTGATGATATTGACTTACGATTACAGATACATGAAAACACTAGA
TATAACGGTCGCATATTATGGAAGATTGACGACTTTCATTCCAGAAGACA
ACAAGTCTTATCAGGTGAACTCCACGCTTTACATAGTGCGCCTTGTTATT
CAAGTGATTATGGATACAAATTTTGTTTACGTGCTTACCTCAATGGCGAT
GGAGTTGGAGAAGGAACACACGTGTCCCTTTTCCTTGTCGTCATGAAGTC
CGACCATGATCGAGTCTTAGAATGGCCTTTCCAAAAGAAAGTGAAGATGA
CACTAATCAATCAACAAAATCGGCGTCGTGATCATACAGAAGTCATGACA
CCGAATAAAGACTCAGCTAGTTTTCAACGGCCAAAAAATGACACCAATGT
TGCGTCTGGTTGTCCGCTTTTTATGGCGCTCGATCGCTTAGATGCAGAAG
GGTTTGTCAAAGAAGATGTATTATTTTTTGATGTTACCGTTGAGTGACTT
CCTATTTTTGTATACCTTTCTTCATTTTGTAAAAcctttgctttttattt
ttatgaaaaacattCTTTTGTATAAAATGTTATATATAAACCATTGTTAT
TTTATGTTATATTTACCAACAAACAGCTTTctttaaaatactaaaaaaat
agttttgtaTCGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066101-exon-scaffold_450-1491911889:109109..110573 | TCONS_00066101-exon-scaffold_450-1491911889:109109..110573 | Clytia hemisphaerica | exon |
| TCONS_00066101-exon-scaffold_450-1510915933:109109..110573 | TCONS_00066101-exon-scaffold_450-1510915933:109109..110573 | Clytia hemisphaerica | exon |
| TCONS_00066101-exon-scaffold_450-1575043694:109109..110573 | TCONS_00066101-exon-scaffold_450-1575043694:109109..110573 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_450 | supercontig | scaffold_450:109109..110573 + |
Blast
BLAST of TCONS_00066101 vs. Swiss-Prot (Human)
Match: TRAF3 (TNF receptor-associated factor 3 OS=Homo sapiens GN=TRAF3 PE=1 SV=2) HSP 1 Score: 173.326 bits (438), Expect = 4.693e-47 Identity = 80/234 (34.19%), Postives = 137/234 (58.55%), Query Frame = 2
Query: 626 EQFQTFQDELNILKRNYHKHTESGPNSPSLGRRRRAINTVSEQQNELKILTNTVEENTRNID-----------DIDLRLQIHENTRYNGRILWKIDDFHSRRQQVLSGELHALHSAPCYSSDYGYKFCLRAYLNGDGVGEGTHVSLFLVVMKSDHDRVLEWPFQKKVKMTLINQQNRRRDHTEVMTPNKDSASFQRPKNDTNVASGCPLFMALDRLDAEGFVKEDVLFFDVTVE 1294
E+ + E+ ++N+ + + SL R + +V + ++ T +E D D+DLR Q+ E YNG ++WKI D+ R+Q+ + G+ +L+S P Y+ +GYK C R YLNGDG+G+GTH+SLF V+M+ ++D +L WPF++KV + L++Q + RR + P+ +S+SF++P + N+ASGCP+F+A L+ ++K+D +F V V+
Sbjct: 328 EKLKELDKEIRPFRQNWEEADSMKSSVESLQNRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVD 561
The following BLAST results are available for this feature:
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