TCONS_00066121 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066121
Unique NameTCONS_00066121
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length795

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066121 ID=TCONS_00066121|Name=TCONS_00066121|organism=Clytia hemisphaerica|type=transcript|length=795bp
ACGAGATATGAATGAAAAACTGCTTACCGATTTGATTCTGATTCCAAATG
AAGCGTCTTCTAAGTCTTGTAAGAATATCAAGAATGATCAAGATAAGATG
ATTAAAANATTGATGTTTATATGATAACAATAAAAGCATTATAAAATGTG
TTGTCAAGATCTTGTTGACAATGCTCTTGATCATTGTTCAAGAAtgctaa
aattctaaaattatatTAGATTTGCATTGTCACCAAGGTTGCGTATAGGA
CAAAACACGCGTTTGAGAAAAAAGCATTTATTTGTTGGACTTCTAAAATT
ATGGTGAAATGTATGCTATCTCTAAGGTTGAGTTTTCGGTAGGGCAAACA
AAGGGCTATTTACGACATGAAATCGATTCCCAAGACCTGAACGttgcaaa
ttttgaatttttcctgaAAGCTTTTGCTGGGTAGGTTATCGGCAGGTCTA
AGAAATAAATTCAGCGTCGTAAATAGCATCATCAAAACACGCGTTCTCAA
AAAATAATTGCATTTGTTTGCTCGATTTCCAAAATTATAGTTAATGTATG
TTGTTCCCAAGGTTGCGTACATGCTTCAGGAATAGCTAGAACTGAGTGCG
CAcgccatttttttcaataaggcgagaaaaattgaattaattGTTTTAAA
GACATATGGTCGGAAAAATATTGTAGTGGGCTTGTTAAGATTTTAGACAA
ATTAATTGCTCATTTTGTGAAGTGTAcgtgattttttgcataaaaatacT
CTTATTATATGTAGATTGAAATTTGAagctgtgccaaatttcatc
Run BLAST on NCBI

transcript from alignment at scaffold_450:241151..241945

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066121 ID=TCONS_00066121|Name=TCONS_00066121|organism=Clytia hemisphaerica|type=transcript|length=795bp|location=Sequence derived from alignment at scaffold_450:241151..241945 (Clytia hemisphaerica)
gatgaaatttggcacagctTCAAATTTCAATCTACATATAATAAGAgtat
ttttatgcaaaaaatcacgTACACTTCACAAAATGAGCAATTAATTTGTC
TAAAATCTTAACAAGCCCACTACAATATTTTTCCGACCATATGTCTTTAA
AACaattaattcaatttttctcgccttattgaaaaaaatggcgTGCGCAC
TCAGTTCTAGCTATTCCTGAAGCATGTACGCAACCTTGGGAACAACATAC
ATTAACTATAATTTTGGAAATCGAGCAAACAAATGCAATTATTTTTTGAG
AACGCGTGTTTTGATGATGCTATTTACGACGCTGAATTTATTTCTTAGAC
CTGCCGATAACCTACCCAGCAAAAGCTTtcaggaaaaattcaaaatttgc
aaCGTTCAGGTCTTGGGAATCGATTTCATGTCGTAAATAGCCCTTTGTTT
GCCCTACCGAAAACTCAACCTTAGAGATAGCATACATTTCACCATAATTT
TAGAAGTCCAACAAATAAATGCTTTTTTCTCAAACGCGTGTTTTGTCCTA
TACGCAACCTTGGTGACAATGCAAATCTAatataattttagaattttagc
aTTCTTGAACAATGATCAAGAGCATTGTCAACAAGATCTTGACAACACAT
TTTATAATGCTTTTATTGTTATCATATAAACATCAATNTTTTAATCATCT
TATCTTGATCATTCTTGATATTCTTACAAGACTTAGAAGACGCTTCATTT
GGAATCAGAATCAAATCGGTAAGCAGTTTTTCATTCATATCTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041396XLOC_041396Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066121-exon-scaffold_450-1491911889:241151..241945TCONS_00066121-exon-scaffold_450-1491911889:241151..241945Clytia hemisphaericaexon
TCONS_00066121-exon-scaffold_450-1510915933:241151..241945TCONS_00066121-exon-scaffold_450-1510915933:241151..241945Clytia hemisphaericaexon
TCONS_00066121-exon-scaffold_450-1575043694:241151..241945TCONS_00066121-exon-scaffold_450-1575043694:241151..241945Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_450supercontigscaffold_450:241151..241945 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0816446	0	0.0778366	0.218609	0.459185	0.0631937	0.122675	0.120977	0	0.209077	0.0687557	0.0368927	0.0454488	0	0	0	0.0585357	0.0856549	0	0	0	0	0	0	0	0.0684633
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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