TCONS_00066143 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066143
Unique NameTCONS_00066143
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1759

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066143 ID=TCONS_00066143|Name=TCONS_00066143|organism=Clytia hemisphaerica|type=transcript|length=1759bp
CTCTGATAATTTGTGATTACCTTGTGGTAAAAGATTCGGATATTGGTAGA
CATACTCCAGGAAGCAGACAACCGAACATCTGGAATAACTGAATCATTTT
GGTGAACACAAATGATTCTATCACGAACACTTAACATCATCAATTGCATC
TGGCCTTAAGATCATCTGTTCCTTTCACAAGACATCGATTGATTGGCAAC
CTTTGGTGATTCTAGCAACAGATGGTCTTTGTATTTGGCTTCGATGAAGA
AAGTTTGAATGTCGTCCAATAACAACATGGTTAAAAAGgCAGGAGACGAA
ATGGACCTGGATGATCTCCTGGATGACGAAGGCTGGGATCTTCTCAATTC
TCTCACTGATGAAGAACTACTTCAACTCAATGCTGATTTCGACCCTGAGA
ACTCCCTAGTCCCAGTATCAGATCGTACGGGATTAGTAGCCGCTAAAAAT
GCTGGTCCAATGTTCAATCAAGAAGACTTGGTGCAAGGTCTTAACAAAAT
GGTTGAGAGCAGCAAAACAGTCTTCAAGAATGAAAAGATCAGACAGAAGg
aggagaagaagaaaaaagaaaaggaagaacGCTTAAAGAAACAATATTCG
AGGGATAAGCCGAAACTGAATCGAGAGCCTACGgTTGAGCTCACAGCTGA
AGAAGAAGAGCTCTTAGAAGCAGCCACAGAAGAAGAACTCATCGAAGCCG
CAGACATTGCGTTACAACGTGGACGTCATGACGTTTACAACCGTATTACC
GTAGCACTAAGCAAACGTAAACGATTACTACAACGTTTCGAATCTTTCGG
TCCGGACGACGATTCAGCGACGTATTCCGACACTTTTTCATCGACCCTCT
CCTCACCGACTTCTACACTTTCGTCTTCATCAATCTCGCCGACGCTTACG
ATCACACCGACAATCCCACCGACGATACCGAACGGACACTACAACGATAC
CTTCAAATACACGGCACAAGCGACAGCTGATACAACCGATAATTTACTTC
TAACAACTCTTCCTCAGATTCCAAACGGACAAACAACGAACCACGATAAA
AACGATAATTTCTTTACGCTAAACGGTCAAGCAGACTTCGATAATTCCGA
TAAATCTTTAACAGTCAATGGTATCGATACAGAGAATTATGTTTTAGATA
CAAGTACAACTTTGCATCCGCTGAATTATACTGATTTTACACCGATTGAG
AATAACGGAGAATCGATAAATGCAATCGATGAATCGAATGATTCGATTGA
GACGAACGGTGTAATAAATGCTTATGACTTATCTATTGAATCGATAACAA
CGAACGATATTTCGGCAGATTTGATAATAACGAATGATACAACCAATGAA
TCGATAAAACCGATTGATAAATCTATTGAATCGAGTAAAACGAACGATAT
ATCGAGTGCATCGAATGAGACTTTAGATAATGATGATGAAACTTTTGAGG
TAATCGAAATGAACGAATCGAGAAATAGTCGAGGTAAAAAAGACTCGATT
AAGTATACTGATACAGGACTTAAACCGACGAACAAATTGAACAATCTTCG
GCAGAAATTTAGTTCAACGTTGGTCCAAGAAAACGCCATAAAGGAGGGCG
TGAAATCGATAAAACCTGTTAAAACGAGAAAACTAAGCGAAGAAAGATCG
ACGTCGAAACGAGTCGATAAATCAGAAGTTAAATCGGTTTTAAGAAAACG
AAAGAACAGTGTTATAGAAAAGGTTGAAGATACGTTGGAACAGGACGCTA
GTGCTACGG
Run BLAST on NCBI

transcript from alignment at scaffold_451:414231..419302+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066143 ID=TCONS_00066143|Name=TCONS_00066143|organism=Clytia hemisphaerica|type=transcript|length=5072bp|location=Sequence derived from alignment at scaffold_451:414231..419302+ (Clytia hemisphaerica)
CTCTGATAATTTGTGATTACCTTGTGGTAAAAGATTCGGATATTGGTAGA
CATACTCCAGGAAGCAGACAACCGAACATCTGGAATAACTGAATCATTTT
GGTGAACACAAATGATTCTATCACGAACACTTAACATCATCAATTGCATC
TGGCCTTAAGATCATCTGTTCCTTTCACAAGACATCGATTGATTGGCAAC
CTTTGGTGATTCTAGCAACAGATGGTCTTTGTATTTGGCTTCGATGAAGA
AAGTTTGAATGTCGTCCAATAACAACATGGTTAAAAAGGTCTCATTGAAA
TTATTGGTTAACCTACCACAATTGTCTGGTTCAATACGTCAAAACAGACA
AGCTGGTTTCTGACATCTTTGCAACATTGTCTGTCAACATTTATCATGtt
attgtagatttttcttaaaatgatAACTCAGCCAATGAAATACATAGCAA
ACACCAGTACTGATATTGGTGTTTGCAATGTTCCGGTAAAAATCAACACA
TTGTTGGTGTTGGAACGACGATCGATCAAAATACACTTGAATTGATTTCG
GCTTTTCTTCTAAGAACTTTTTCATCAAACCATCGCCATTTCTCTTGTTT
TATAGAGAAAGCCACGTTCTGGAATGATCAggtcaaaaaattcaatttat
aatattttactttAATTCTAATCGAACcaccaatttttcttttgtttata
ggCAGGAGACGAAATGGACCTGGATGATCTCCTGGATGACGAAGGCTGGG
ATCTTCTCAATTCTCTCACTGATGAAGAACTACTTCAACTCAATGCTGAT
TTCGACCCTGAGGTACAgtattacatccctgtctcacagccccggtagaa
ttgtttttttccacatcaagataaaatatttctttggaTATCCCAATGGT
AATAGAAATGCTTTTGTTCCAAAAAATGTAGTAgggatggttttagagtg
caattttttaacatttaatttcgaatggggatgaaaccAAAGACATAGTG
GGTCTGAATTTGTCAAgtactttcatttttttattgattaaACCGGGGAG
CGGATTCACATGTGAGAAACGAAAAAAAACagacattcaaaaaaaaaatg
ggcAGTGTCCAAGGCAAAAATCTATATCCCAGGCCAAAATTGTTTATAGG
ATATTAAAAAGTATTATTTCTGCGATGAAAGATTCAAAATAATcgtggaa
aatttaaaattataaattttgatttcggAATTGATTTATAAATGGAGTAA
GCTATAAACAGCATTTGCATTATAGAGTGCAGAGCACACACCTATAACTA
TAAAAATCAACAAGCCTTTATAAGTTTAAAGTTTggtaagaaaaatagaa
aagagaaaaatagagctttaattttatttcattgaGTTTGAATATTAATG
AGATTAACTCATAAAGACGTCCAGTGCTGATCTGTCAGCTAAGTAAAGTC
GAATGATTTCAtagacaaaaattttaaatttttttaaaattatgttaATC
TCATGTCCTGTTGTAGGCAGGGTAGGAATGTTCGATCGATATTTTCTCGC
ACTTTAATATTATCAAtacaaaaatttcaagtgtAGACTTTTTTTTGTGC
cgagagttttttttttaaattaaaaagttttaaacgtTGGAAATTAAATA
GAGCATTAAAATGACATCAAAAATGAAAGTTTAACGGAATGTTGATAGaa
tgatgttcttataaattgaacgatcatttcaaatcaaaaattgtcTAATG
TCCTCTTTGATAACTTGATGACGTCACCTAGCCTGCCATGAGATCTGTTT
AAATTCCttcgtttttttatatattttattagaacatcaaAAGTTATAAT
GTGTTTGTTGAACAACCATTAAAAGAGTGCTCAATACTCTTCGTAGAGCA
AATTCaataaagttatatttcaaaaatcaccatGTAAAATACATAACTGA
AAGTTTCTTGCTACATACGCAATCATCAGATGTATCCAAAGTTGAATAAA
CAACTGAACAATTGAAGGCTTTTTTTCTCAGATTTtgtgttttaatattt
tctaataaaaaaaatccataTTTTGTAGTTGATTACACACAGTAGGCGAT
TGGCATCGCATTATAATTAGCTAATTAAAATGATCAACAGCATCTAATTA
AATCTATAAACTTGATTTCTCATCTCTAATGGAACCATGCATGCTCTTTC
CCTATAATTTCATCTAATGTCATGTCTGCACCCGAAACTATTTTTATTAA
TTCAAACTAAGCTTCGTACATGTTTTATTCCATAATGAATAAATCGAAAC
TTGAAAAATGGCAACCAGTTTGCATCCGTTGAAAATTATTACCATTATTG
CTCCCTCCTTTGTTATAAGAGTCCAGTATCTTCAACATTGATCAACTATA
AATTTTACAATGATTACCAAAATAATAACCTCTTTTCGATTCTTACCTTA
AAGATTTTCTTGATCATTTTTCTTAGAACCCTTATAATACTTTCTCCTTG
GAACAAGATTTGACACTTAAATcataattaatgaaaaaatttccCCACTT
AATAACCCAAAACCCTTTAAATATCCTCATAATTTGTTCGTCCTGGTATC
AGATAATACCAGATTAGTAGCCACTAATGAATCAATGAACACATTCAATG
ACGAAATAACCCTTTAAAAATCCTCATTTTTTTTAGAACTCCCTAGTCCC
AGTATCAGATCGTACGGGATTAGTAGCCGCTAAAAATGCTGGTCCAATGT
TCAATCAAGAAGACTTGGTGCAAGGTCTTAACAAAATGGTTGAGAGCAGC
AAAACAGTCTTCAAGAATGAAAAGATCAGACAGAAGgaggagaagaagaa
aaaagaaaaggaagaacGCTTAAAGAAACAATATTCGAGGGATAAGCCGA
AACTGAATCGAGAGCCTACGGTAAGACGgtcttttcaaaaatcagttctG
GATAATtataatcaaaaatcaattgTAGTAAGGTTACTTAGAATACCACa
aagttttatgaaaataaaaaatgcccaAACCTAACCCAAACCCATCTTCG
AAAATCCTTCAAACACCGACTCTCCTTAAAGACTGACAACCATTCTTGAA
CTAATACTTCGTATAAACAAATGCCTTGCATACATTACAAACTCttatat
tttccaattttttcaataggTTGAGCTCACAGCTGAAGAAGAAGAGCTCT
TAGAAGCAGCCACAGAAGAAGAACTCATCGAAGCCGCAGGTTCGTCTATT
TTTCCTTTATTGTTTCTTCACTAAGAAAGTTCTTAGTGTTTTCCCCTTGT
TTTTTTCTATAATAAGAAGATTAAACTTAAGTTTGGTTTTCACCTAATCC
AATCTTAAGGAATATTTAGGACGTAGTGTAGATATAGATTTATTCCACAG
GTTTTTTATGCCTCACATTAAGTTTAGTTAGATGCTATATGTTTTACGGT
ATTATTTTATTGGTAGTTTGATAGCCAGACGTACTCCTAAGTTGATCCTG
AAGTTGATCCCTTAGAAACCAAAGTTTGATGCNAAGTTCTTAGTGTTTTC
CccttgttttttttctataataAGATTAAACGTTTGGTTTTCACCTAATC
CAATCTTAAGGAATATCCAAGACGTAGTTTAGATGTAGATATAAGCCACa
gttttattttcgcctcaCATTAAGTTTAGTTAGATgctatatgttttatt
atattattttattgCCAGTTTTATAGCCAGACGCACTCTAAGTTGATCCT
GAGGTTGATCCCTTAGGAACCAAAGCTTGATGTCATTTTGACGTTATCAG
AGCAGTCCATCTTTTTAGATTAGCCCTACTTAAATTACGAAGGAGATTAA
ACTTTAATAGATAAATAGCTTTTTAATTCCTTAGTACAGATTAATATTGG
CAAGACACAGCCTCTTTTTTTTCATAGTCTCCCCTTATCGATCCTCTATC
TCTatcgaaaacaaaaaattttactttttttgatcaAAACCAAACTTCCT
CACTTCACTCCTCCAGACATTGCGTTACAACGTGGACGTCATGACGTTTA
CAACCGTATTACCGTAGCACTAAGCAAACGTAAACGATTACTACAACGTT
TCGAATCTTTCGGTCCGGACGACGATTCAGCGACGTATTCCGACACTTTT
TCATCGACCCTCTCCTCACCGACTTCTACACTTTCGTCTTCATCAATCTC
GCCGACGCTTACGATCACACCGACAATCCCACCGACGATACCGAACGGAC
ACTACAACGATACCTTCAAATACACGGCACAAGCGACAGCTGATACAACC
GATAATTTACTTCTAACAACTCTTCCTCAGATTCCAAACGGACAAACAAC
GAACCACGATAAAAACGATAATTTCTTTACGCTAAACGGTCAAGCAGACT
TCGATAATTCCGATAAATCTTTAACAGTCAATGGTATCGATACAGAGAAT
TATGTTTTAGATACAAGTACAACTTTGCATCCGCTGAATTATACTGATTT
TACACCGATTGAGAATAACGGAGAATCGATAAATGCAATCGATGAATCGA
ATGATTCGATTGAGACGAACGGTGTAATAAATGCTTATGACTTATCTATT
GAATCGATAACAACGAACGATATTTCGGCAGATTTGATAATAACGAATGA
TACAACCAATGAATCGATAAAACCGATTGATAAATCTATTGAATCGAGTA
AAACGAACGATATATCGAGTGCATCGAATGAGACTTTAGATAATGATGAT
GAAACTTTTGAGGTAATCGAAATGAACGAATCGAGAAATAGTCGAGGTAA
AAAAGACTCGATTAAGTATACTGATACAGGACTTAAACCGACGAACAAAT
TGAACAATCTTCGGCAGAAATTTAGTTCAACGTTGGTCCAAGAAAACGCC
ATAAAGGAGGGCGTGAAATCGATAAAACCTGTTAAAACGAGAAAACTAAG
CGAAGAAAGATCGACGTCGAAACGAGTCGATAAATCAGAAGTTAAATCGG
TTTTAAGAAAACGAAAGAACAGTGTTATAGAAAAGGTTGAAGATACGTTG
GAACAGGACGCTAGTGCTACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041406XLOC_041406Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066143-exon-scaffold_451-1491911889:414231..414518TCONS_00066143-exon-scaffold_451-1491911889:414231..414518Clytia hemisphaericaexon
TCONS_00066143-exon-scaffold_451-1510915933:414231..414518TCONS_00066143-exon-scaffold_451-1510915933:414231..414518Clytia hemisphaericaexon
TCONS_00066143-exon-scaffold_451-1575043694:414231..414518TCONS_00066143-exon-scaffold_451-1575043694:414231..414518Clytia hemisphaericaexon
TCONS_00066143-exon-scaffold_451-1491911889:414932..415042TCONS_00066143-exon-scaffold_451-1491911889:414932..415042Clytia hemisphaericaexon
TCONS_00066143-exon-scaffold_451-1510915933:414932..415042TCONS_00066143-exon-scaffold_451-1510915933:414932..415042Clytia hemisphaericaexon
TCONS_00066143-exon-scaffold_451-1575043694:414932..415042TCONS_00066143-exon-scaffold_451-1575043694:414932..415042Clytia hemisphaericaexon
TCONS_00066143-exon-scaffold_451-1491911889:416917..417150TCONS_00066143-exon-scaffold_451-1491911889:416917..417150Clytia hemisphaericaexon
TCONS_00066143-exon-scaffold_451-1510915933:416917..417150TCONS_00066143-exon-scaffold_451-1510915933:416917..417150Clytia hemisphaericaexon
TCONS_00066143-exon-scaffold_451-1575043694:416917..417150TCONS_00066143-exon-scaffold_451-1575043694:416917..417150Clytia hemisphaericaexon
TCONS_00066143-exon-scaffold_451-1491911889:417400..417469TCONS_00066143-exon-scaffold_451-1491911889:417400..417469Clytia hemisphaericaexon
TCONS_00066143-exon-scaffold_451-1510915933:417400..417469TCONS_00066143-exon-scaffold_451-1510915933:417400..417469Clytia hemisphaericaexon
TCONS_00066143-exon-scaffold_451-1575043694:417400..417469TCONS_00066143-exon-scaffold_451-1575043694:417400..417469Clytia hemisphaericaexon
TCONS_00066143-exon-scaffold_451-1491911889:418247..419302TCONS_00066143-exon-scaffold_451-1491911889:418247..419302Clytia hemisphaericaexon
TCONS_00066143-exon-scaffold_451-1510915933:418247..419302TCONS_00066143-exon-scaffold_451-1510915933:418247..419302Clytia hemisphaericaexon
TCONS_00066143-exon-scaffold_451-1575043694:418247..419302TCONS_00066143-exon-scaffold_451-1575043694:418247..419302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:414231..419302 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.316637	0.179763	0.531557	0.566224	0	3.02431	0	0	0	0	0	0	0	0	0.0875135	0.0911271	2.01331	2.41479	0.0356594	4.11502	3.35785	2.73188	1.71615	3.60643	6.92322	8.94242	1.49241	0	0.0349321	0.163587
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066143 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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