Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066145 ID=TCONS_00066145|Name=TCONS_00066145|organism=Clytia hemisphaerica|type=transcript|length=4158bpRun BLAST on NCBI transcript from alignment at scaffold_451:421169..437124+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066145 ID=TCONS_00066145|Name=TCONS_00066145|organism=Clytia hemisphaerica|type=transcript|length=15956bp|location=Sequence derived from alignment at scaffold_451:421169..437124+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00066145 vs. Swiss-Prot (Human)
Match: TMOD3 (Tropomodulin-3 OS=Homo sapiens GN=TMOD3 PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 2.729e-20 Identity = 64/219 (29.22%), Postives = 109/219 (49.77%), Query Frame = 3 Query: 3132 ALLKMNGILTNEQINSVWAGEKPTGSLSKNTSVKGAEIKKERRVAPKDEETELDVVALNKNIKEDSDAMFYLCINNQPRLEKKIKKTIIDSVRTSKKMKHLSLAMIGLIDFEVKELAEAIRINTKLETINLESNVITQHGLAPLMKEIARHPNIREVKIANQKQPFGGNGEECMATAIDQNENILKFGYSFKAPGPRNKADRAIIRHNEALRQKRRQGE 3788 A+L M+ ++TN + ++ + VKG +I P E + K KE+ + + +NN + K ++ T+ +K SLA D AE +++N L+++N+ESN IT G+ L+ + + + E+KI NQ+Q G E MA +++N NILKFGY F GPR +A AI ++N+ +R++R +G+ Sbjct: 136 AILGMHNLITNTKFCNIMGSSNGVDQEHFSNVVKGEKILPVFDEPPNPTNVEESL----KRTKENDAHLVEVNLNNIKNIPIPTLKDFAKALETNTHVKCFSLAATRSNDPVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDALRDNETLAELKIDNQRQQLGTAVELEMAKMLEENTNILKFGYQFTQQGPRTRAANAITKNNDLVRKRRVEGD 350 The following BLAST results are available for this feature:
BLAST of TCONS_00066145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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