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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066150 ID=TCONS_00066150|Name=TCONS_00066150|organism=Clytia hemisphaerica|type=transcript|length=456bp
AAAAACATAAAACATCCAAACACAAATGGTACCATGTTAATCCAAATGCA
ATCTCATCTAAATGTGCTTATTTCTTTGAATGTGCCATGCGGAGTGGATT
GCAACCAAATCTGGTGATGTTTTTCACCAGTATTGGTTTAAATAAAGCTG
AAGCTGGATTCATTGTAGGTCTAAGGATGATTGGGATGATCATAGGAGGA
CCATTTTGGGGTTTGATCGCTGATAAATGGCATTGTCATCGTATTGTAAT
TCTCTTGATGTGCATCACATCTCTATTGACCATCTCCACTCAACCTTTTG
TTGGACTACATTTTGGAAACCCTGAAACCAACAAATGTCCTTACGTTAAA
GACACTACTTCAAGTAGTATCAACTTGTCCTCGCAGGTGATAAATGCGTC
AAATTACAGTATACTTACAACTGGAAACTACCTCCAAAACAATGCTCTCA
GCGTAT Run BLAST on NCBI transcript from alignment at scaffold_451:464830..468330+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066150 ID=TCONS_00066150|Name=TCONS_00066150|organism=Clytia hemisphaerica|type=transcript|length=3501bp|location=Sequence derived from alignment at scaffold_451:464830..468330+ (Clytia hemisphaerica)
AAAAACATAAAACATCCAAACACAAATGGTACCATGTTAATCCAAATGCA
ATCTCATCTAAATGTGCTTATTTCTTTGAATGTGCCATGCGGAGTGGATT
GCAACCAAATCTGGTGATGTTTTTCACCAGTATTGGTTTAAATAAAGCTG
AAGCTGGATTCATTGTAGGTCTAAGGTATTTgcagatctttttttttttg
caaacaacTAGCAATGTGCCATGTTGACAAGCCCGACCTAACAACAGGCC
AGGGGCCTTTTAACTCTCGAGGAaatcaatgaggtgaattttgcgagtct
gtagttttttccgtgtttaagtctaaacagagctttacgccgaaaataca
ttcgaattttcaaatgtaagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCTGGACAGTCTGGAAAATGTTATTTGTCACTCGATCTttc
gaaatcattgaaatctttttttctgagaggggaaggactctgatattttc
tttttctaattgTTGCATACCGGTATTCTTTTCATTTAACagagtcaaaa
tgtattttctttcaaagaattatgatCTATAATCAGGAAACACTTCTTAG
TAATTTTAACTGTATTTTGGATGCACAAGTTTATTGGAAGGGCATTTAAT
ATTTTTGCCCAGAgttatagcttcagttttcatttttattcacttctttg
ttgtttacaattctttattttattctccaaaaagctttagattttttttt
gtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcagt
tttgagatgtttttgaatttgaaatgcgtgctggagctcaactacaataa
aacaaaggttagttaacttttattaattGTGGATTCTTGATATTATAAGT
CGCAGATGACAAGAGCAAGAGAATTCTCTCACTGTCAACTGAAGCAGGAG
TTGTGGTACCACCTCAAAATTGGTCGAAACTCATGGAGAATCCAGCCTGA
CTCAGCTCATTATTATTTGCTGGCAAATGCTAAACCCCCTTCACTCTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNctctttcattttctaagaTCCCTGTTCTGGCAGAATG
TAGATTAAAATGCTATGTTATGCTATTATGGtctttaaagagaatggaag
TAAAAGATGGGTACTTTATGCTAaccatccctgtctcactgaaagTTTTA
TCTCTATAAGGTTATGGATTGATGACACAAATCTTGATTTATATTAgatt
tatttatattctttctttttcttcaggatgtagaaaaaatggatttcaga
TGGTTTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTGTTTATACgtttaaatttgagctcaatactct
tcattatgaaaatcgcaaaatttgataaattttacagaccagaaaattca
cctcattgacaCACTCGAGCTGTCTCGGGATTTTCGCAAGACAAGGCTTT
CCCAGAAAAGGACATTGCAACCTCTGTAAAACCAATgtcctttgaaaaat
tttggtgACTATATTTTCATTGTGTTAGGGTAATATATTCTCGTTAAAAA
TATTACGATATGGTAATTTAGATGTCTACATCACTTGCATAGAGAATTTT
tatcgaaaagcttttgctcatttttaaaaataaactttccaAATGGCAGA
ATTTCAAAGATAATCTAAATATTATCATTTACTTATCACAGGATGATTGG
GNTTTATAGTGAGTTTTGAATATTAAAAGACTTTGATctgaaacttttta
atttttcacacTTACCACAGGATGATTGGGATGATCATAGGAGGACCATT
TTGGGGTTTGATCGCTGATAAATGGCATTGTCATCGTATTGTAATTCTCT
TGATGTGCATCACATCTCTATTGACCATCTCCACTCAACCTTTTGTTGGA
CTACATTTTGGAAACCCTGAAACCAACAAATGTCCTTACGTTAAAGACAC
TACTTCAAGTAGTATCAACTTGTCCTCGCAGGTGATAAATGCGTCAAATT
ACAGTATACTTACAACTGGAAACTACCTCCAAAACAATGCTCTCAGCGTA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066150-exon-scaffold_451-1491911889:464830..465004 | TCONS_00066150-exon-scaffold_451-1491911889:464830..465004 | Clytia hemisphaerica | exon |
| TCONS_00066150-exon-scaffold_451-1510915933:464830..465004 | TCONS_00066150-exon-scaffold_451-1510915933:464830..465004 | Clytia hemisphaerica | exon |
| TCONS_00066150-exon-scaffold_451-1575043694:464830..465004 | TCONS_00066150-exon-scaffold_451-1575043694:464830..465004 | Clytia hemisphaerica | exon |
| TCONS_00066150-exon-scaffold_451-1491911889:468050..468330 | TCONS_00066150-exon-scaffold_451-1491911889:468050..468330 | Clytia hemisphaerica | exon |
| TCONS_00066150-exon-scaffold_451-1510915933:468050..468330 | TCONS_00066150-exon-scaffold_451-1510915933:468050..468330 | Clytia hemisphaerica | exon |
| TCONS_00066150-exon-scaffold_451-1575043694:468050..468330 | TCONS_00066150-exon-scaffold_451-1575043694:468050..468330 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:464830..468330 + |
Blast
The following BLAST results are available for this feature:
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