TCONS_00066158 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00066158
Unique Name	TCONS_00066158
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2177

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_451:534767..541700+

transcript sequence

>TCONS_00066158 ID=TCONS_00066158|Name=TCONS_00066158|organism=Clytia hemisphaerica|type=transcript|length=2177bp
ttttagagaaacaacaattataaaataaaatgctGTCTTATATTTGCATC
CTGGTGTTCTGCTTCGCTGCCGTTCGTTGCGACGTCCCTACAAACTGCTC
CTACCCGGAGGTAGTAGGAAAATGGACATTTTATATCGGACAGTCAAATT
TTACAACCGGTTATCAATGTCCTCTTGAAGGGAAAGTTGATCCTGTGGAG
AAAATCCATTTGGAGTTGATGTTTCCAGATAAAGTAATGGATTCTGATGG
TAATATGGGAACTTGGACTATGGTATATAATCAAGGGTTTGACGTCAGCA
TTAAAGGGCGTCGTTTCTTCGCTTTTCTCCAATACAAAGAAATCGTTAAA
GATGTCATCGTCAGCATTTGTAATGTCACTTTCACTGGATGGGTTCGTGA
TGAATTAAATACACAACAACCCGTGTTCCCTGTCCAAAATTGGGGCTGCT
ATTATGGTGTCAAAGACCAAGGTCCCGCCAAACGTAAAGTTCACGTCCGC
CCGTCGCGTTCTCATTTCCTCGAAAGTCAACGTTACGGAGACAAATCAGA
TTACGTACAACGTCTTAACAATCACCAATCAACGTGGAGGGCGGCTGAGT
ACCCACGTTTCGAAAATATGACCATTAGTGATATGATTCAATTGGCGGGA
GGGCGTAAAAATGTTCCAAATGTACGCCCAAGTGAAATCACACCGGAGAT
GCGAGAGATGGTGAAAGATCTTCCAGAGAGTTTCGATTGGCGCAACAAAG
AAGGTCAGAGTTACGTCACACCCGTTCGTAACCAGGGAAGCTGTGGTAGT
TGCTATTCATTTGGTTCCATGGGTGCTCTAGAGGCTGGTGTTGCCATCGC
AACCAACGGACGAATCAAACCTGTGTTTTCACCACAATATATCGTCTCTT
GCTCCAATTACTCTCAAGGATGCGATGGAGGCTTTCCGTATCTGATTGCC
GGGAAATTCGCACAAGACTATGGAGCCATTCTTGAACAGGAGTATCCGTA
TATCGGAAAAGACGCATCGTGTCCGCAAGATTTTATTCCATCAGTTCACG
TGTCCGCTTACGGTTATGTGGGCGGCTTTTATGGTGGGTGTAATGAGGCG
TTGATGAGAATGGCGTTACATAAAGTTGGACCTTTGGTGATTGGTTTTAA
TGTGACGAACGAGTTTTTCCAATACAAGAGTGGTATTTATACTCAACCAG
AAATGCTAGAGGATGACCCTGGATATAACCCTTTTGAAGTCACCAACCAC
GCTGTTTTATTGGTCGGGTACGGAGTGGAAGATGGCATGAAGTACTGGAC
CGTCAAAAATTCATGGGGAACGGAATGGGGTGAAGAAGGTTACTTTAGAA
TCCGACGCGGTACCGATGAACTGGCAATCGAGACTATGGCAGTATGGGCT
GTTCCCTATGTTGGACACTAATTCATGTTATGACACGGCATCACGCTTTG
TTTTGTCGAACTATTTTTGTGTGTAAACTTAAGCCCAGCTATATGACAAT
TaacagttttgaatttttttttatcaatacaTGTACGGCTGCAAAATAAC
AAGTAGagctagatggagtgctttaagctcttccaagcaaaaaaaagtga
atattgcaaaaaatgttgctgccattgttttcgaaaacccgcgaagcttc
tgattggtcaagcgctgaaattattgtgtaatatcacgtgacttaggtag
gatttcctacctaacctcggcacacttttcagcaaaagcacgatatctat
ctagcccttcgggctttataatcTATGAGTCTAAAGACAAATCAcgtttt
tactcgaaatttttttgtgcttgttacatgacatttatttctgattgctT
CAAATCTATTGACACTATTaaagctgtaagttgtaaagcaagtaacatgg
gataaaatcacgtgaactttttcgagtaatcacatgttttgacagcattg
atataattttgcaatccGTGTATTAGTCATTACAGCTCGCCACCACAACT
TCCCGGAATTTTAGCTTACTCTACGACtatcttatcggccaaaacttagt
cggccctaagtgactaaattttggcttggtgactaaaattatggccgact
aaaaatttgggccgactaaaatttaggccaaattgaaagtttataattaa
gctttccttaaccCACTTTTCATATCG

Run BLAST on NCBI

transcript from alignment at scaffold_451:534767..541700+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00066158 ID=TCONS_00066158|Name=TCONS_00066158|organism=Clytia hemisphaerica|type=transcript|length=6934bp|location=Sequence derived from alignment at scaffold_451:534767..541700+ (Clytia hemisphaerica)
ttttagagaaacaacaattataaaataaaatgctGTCTTATATTTGCATC
CTGGTGTTCTGCTTCGCTGCCGTTCGTTGCGACGTCCCTACAAACTGCTC
CTACCCGGAGGTAGTAGGAAAATGGACATTTTATATCGGACAGTCAAATT
TTACAACCGGTTATCAATGTCCTCTTGAAGGGAAAGTTGATCCTGTGGAG
AAAATCCATTTGGAGTTGATGTTTCCAGATAAAGTAATGGATTCTGATGG
TAATATGGGAACTTGGACTATGGTATATAATCAAGGGTGAGTGAGTTTAG
ATTACACCCTTTTTGTAAGTACTAGTATGTTTGTATAAGTTCTCACAAAA
ACTTCTATTTAACTCTCCATTATTAGTCCTGTAATCCATTTGCTAGACTA
CTTTTCGTCTATTAAAATCAATTGATGCTCGAATATGGTATTAATCGTAT
AAAATTGCTTTGTTTGGTGGTaattttgctcagtttgaaggtaattttga
atgtccagggggtcaactgatgcttgtccgacGGGTCAAAAGTCACGATG
TCCGCGGggtaaaattccaaaaaatgttatatcctacacccccccatatt
caattttcttttggaaaagcCCCTTGTAGGGGACTGATCTTCccaaaaac
tgattatgggCTAACCAAATATTTCAATGTCAGAACTTAAATTATATTGT
CTCAGTCTACTCTGCTTCCCCCTCCTACCCAGTTGTACGATTTGGAAGTA
AAATTATTGATTACTTCCCCTCTGATTTCTACCGTAGGTCAAAACTTTTA
GACTGATTTATTTAACCTAATCTTCTGAAGCTAAATGTCTTATATAAACA
TGACAAAACGAGTTTAAGTTTTTCTCTAGAATTGTAGATTAAAGTGGGAA
AGGctttaaaaacgtttttttcttcaaattacaACAATGTTTCTTTCTTC
CTATACCAGGTTTGACGTCAGCATTAAAGGGCGTCGTTTCTTCGCTTTTC
TCCAATACAAAGAAATCGTTAAAGATGTCATCGTCAGCATTTGTAATGTC
ACTTTCACTGGATGGGTTCGTGATGAATTAAATACACAACAACCCGTGTT
CCCTGTCCAAAATTGGGGCTGCTATTATGGTAAGAACTGTTATACCAATC
TCGTTcctgtgtatcccaggctttatttacgttactgatgaaCACCAGAG
AATTATTATATGGCGCTATCAGTAAAcgctgttttttataagaatacact
tcattatgaaaatggccaaaaaaattaagaataatgcttatGGGTTCGCG
ATGAATTGAATACACAACAACCCGTGTTTCCTGTCAAAAATCGTGGCTGC
TATTATGGTAACTTTGTTTATTATAGCATAGTTTCCTCCTGGGTCAGTCC
ACCCCAAATCACCCTCCCCccaactgaaaatgaaaaaatccctTTCTTTC
CCCTCTCtagaaatgttgaaatttttctcttttattctttGAGCAAATCA
GGCGACACAAGGGAATAAGGGTACTTAAAACTCTTCCACTTTTCAggaaa
atcaagattttttctcaaaaagatgATACTAGATGAATAAAGCAACAATA
ACAAATCAGGCATAAAAGTAATAGGAATGGCAAGGGTAGTGGATATCACG
TAgtataggttttttttttagaGACCCTCCCAAAAATCATGgattttttt
gcctaaaaacgcaaaTTACTCAAaagcttggtaacatttaaattccaaat
cagcaccctcaaattggctaggaaacatatcaaaaagtcGGTCATggata
ccttattggtatatattttcgcgtgttacaaattttcgcgattcgcgtgt
attaaatttcgcgattgccgacttctggaaaattttcgcgtgcattaaat
ttcgcgattcactaaactaggtattttcagaaagtgggaatataaagcaa
gaaaaagactgattttgcttgaaacacaacgtttttaaTGTAAAAATACN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNgcgaaattaagtacccgcgaaaatttgtaacacgcgaaaatatatacc
aataaggtattttgaaaaaaagtgaaagggTTTTGGATCACTGGCCACGG
CCTATTCCCCCTAAAAGCGGCCTTCTATCATGAATTTCTTTTCTATCCAG
GTGTCAAAGACCAAGGTCCCGCCAAACGTAAAGTTCACGTCCGCCCGTCG
CGTTCTCATTTCCTCGAAAGTCAACGTTACGGAGACAAATCAGATTACGT
ACAACGTCTTAACAATCACCAATCAACGTGGAGGGCGGCTGAGTACCCAC
GTTTCGAAAATATGACCATTAGTGATATGATTCAATTGGCGGGAGGGCGT
AAAAATGTTCCAAATGTACGCCCAAGGTGAGTTTACAGTTTTCCCGTATT
TATCAATCAGAATTGAAAAATAGTATGATGgacacccagctggcacacaa
cgttttttcaacgtttatctaatgttcacaacgtccaaataacgttagat
taacgttgaaacaacgttgtgtgctaaaTGGGCAGGTATCAAAAATTAAA
TGCAATGTTCAACGAATTTTACAGGCTACATCTCTATTTGagtatgtatt
ttttatttttccataatCCATTCacctagcccggggtccacttaagactt
tttgatagactggacgCCGCGATTAAGTGGCCTGGCAGTTCTAAGTCCTA
AGGGAGTTCTCAATTTCAGGCTTAGGCGGACTGTTTTAAAGATTCTAGTT
GTTTCAAAAATGAGTCaagtaatgtttttatttgaaagatcAGGCATTGC
AAATCTATTATTCAAGTCGGTTTACCATTCTTAATCATATTTTTCGAATC
TAAGTGATGCTTGAAAAAGCttaaagcacgccatctagccctttgggctt
tacagaaatctgtggttTACCATTTCCTCTGACTTATTCCATCTGCTTTC
TGATTTTCAGTGAAATCACACCGGAGATGCGAGAGATGGTGAAAGATCTT
CCAGAGAGTTTCGATTGGCGCAACAAAGAAGGTCAGAGTTACGTCACACC
CGTTCGTAACCAGGGAAGCTGTGGTAGTTGCTATTCATTTGGTTCCATGG
GTGCTCTAGAGGCTGGTGTTGCCATCGCAACCAACGGACGAATCAAACCT
GTGTTTTCACCACAATATATCGTCTCTTGCTCCAATTACTCTCAAGGATG
CGATGGAGGTGAGGCTTAATTGTTTTGAGTTTTGAGATAGAGTTGATATT
CTCCGTGGATAGCCCATTGTTCTAGGACTTTTAGGGagtttttcgattgt
tttcacgggatCCACAGAAAGCCGAAACGTTCctaaaccaatatgaacac
gcTTGATCCGTAACGAAATCATACCGGAACGAGACgtaacagtaacgtgt
gaacatggtctgcGCCTTCATGTTTGGAGCCCGGGtttttatacgttttt
ttttatacgTCACTTtacacttttgaagcttttgcattagcaaaaatatc
gaatttgcgtcaaaacacttgaaaggcttctatttttcgaaaatcatcaa
cgtggaactcactaagaaacggaatgaaaatCCCGGTTTTGGTGAGATGC
TCGCTAGCTTAGCAATTTATAAACTGAACGAAACATTTGACATAGTGGGG
ATTTGAACCATGAACCCGTTTTAAGCGCCGATGTCCTTAACcaacttggc
catcgctccttaTGTTTTTTTCCTAAGATCTAAATAATGTAATATCATTC
CTACTTGAACTGCGTAAAGTTTTGGAACGCTGATTTTTTTCACGCCAAGC
ATATCAAGGTAGAAGTTGTAGCAGTTGATCAATTTCGTATCATAAATGCT
TCGTGCATCGAGCGTGCCAAAAGAAATACTACTATTGCTAATTTTAAATT
AACTTAGAGCTCAAAAGGATATAGAGGAATTTTAAACCTTTCTCAAGGAA
AAAAAAGTAAAGCCTTTAGATTTGAACCAAATATTAGACGACAGATTAAA
CCTAGTGCTTCCTTTATTTTCAGTTGGGACATTTTTCCCTTCTAGCCCAT
CTTTACtcgggcttcaaactcaattttttttcttcgcgCACCACGACGAC
ATCGATAGCGCAGAGAACTCGTGTAAATATGTAAAGCCTGTAAGAAAAAA
CCTGGCTTGCCGACATTGAAATCACCAATTTGAAGaaaagataaattttg
aaaccaccagaacttaagaaaaattgaattccTAGATAACCTGAGAAGTG
CTGGACTTTTTTGCACACTTCTGTAAATTTCgtaacaaaactaaaaaaag
ctTTTGCCTGGTTTCTTTTTGCAGGCTTTCCGTATCTGATTGCCGGGAAA
TTCGCACAAGACTATGGAGCCATTCTTGAACAGGAGTATCCGTATATCGG
AAAAGACGCATCGTGTCCGCAAGATTTTATTCCATCAGTTCACGTGTCCG
CTTACGGTTATGTGGGCGGCTTTTATGGTGGGTGTAATGAGGCGTTGATG
AGAATGGCGTTACATAAAGTTGGACCTTTGGTGATTGGTTTTAATGTGAC
GAACGAGTTTTTCCAATACAAGAGTGGTATTTATACTCAACCAGGTATGC
ATGCCctttattttctaatttccaatttttgttcaaactttcatttacct
tatcggccttttttacgccggcccttattggcgttatttttgggctcgtg
gtgtaataagggccggcgtaaaaagggccgataaagGTATCAAAGGTTTA
TCATTTGCTTTTCTGCTCTTTCCCCGTTTctctttttatcaaatttttat
cgGTCTATAGTTTGGTTCATCATTTGCTTTCAAAGAGGTTTTTCAGGTAC
AGTTGAatatctctctaattcgatctttaagtTGTctgatatctacggct
aatttcaaaattcatttccgtAGAGGAAACGAAGCACGAAGTACTaggaa
gcgataaacgtgagatacactctggtagaGAGTAATCTTTAAGGGAACCA
AATAAtgtttcgaattagagaataaTTTGAATtgcagagagtaatttaaa
ccactctccagctgaggggaccaagtttttttagttcgaattacaaaaag
attcgaattatagagagagttgactgtatttcACAATTAATGTAATATAG
AAGAACTCCGCCATTATTATGCGAGATTTGAACAGGCGATTACGTACGCA
AATCTTTCATAATGGTTGAAATGACATAACATTTTTCAAACTGACTTGAC
TAAAGTGGTTCTAAATGATATCAGAAAAACTTTGACTGTAAGAGAGGGTC
GAACAATAGATCTGGTTGATCCGAACTTTTATCCAATTATTATAAATGTA
TAAAATTCATACTTTGAATAACCTGGTAGTAAAGTCAAACTCGATTCTCT
TGTGAATACACCTTTTTCCGGTTAGCcgtttcgtataaaaagtcaccaaa
atttctaCTAAACAAACTATCCtattggctaaaagcaaaaacataaacaa
aaaatgtgcAGAGTATGAGAAAAATGGGCTTTCTATGCTCTTACTCtgga
cattttttttgtttatgtttttgctctTAGCCAATGAGAGtgtttgttta
ctcgaaattttggtgactttttatacgaagcAGTTAACcgtaaaaaggtg
tattaaagaTTGGAACCCCTCTGTTCCGATATAACATCATGTTCCCTTTC
TCTCTAGAAATGCTAGAGGATGACCCTGGATATAACCCTTTTGAAGTCAC
CAACCACGCTGTTTTATTGGTCGGGTACGGAGTGGAAGATGGCATGAAGT
ACTGGACCGTCAAAAATTCATGGGGAACGGAATGGGGTGAAGAAGGTTAC
TTTAGAATCCGACGCGGTACCGATGAACTGGCAATCGAGACTATGGCAGT
ATGGGCTGTTCCCTATGTTGGACACTAATTCATGTTATGACACGGCATCA
CGCTTTGTTTTGTCGAACTATTTTTGTGTGTAAACTTAAGCCCAGCTATA
TGACAATTaacagttttgaatttttttttatcaatacaTGTACGGCTGCA
AAATAACAAGTAGagctagatggagtgctttaagctcttccaagcaaaaa
aaagtgaatattgcaaaaaatgttgctgccattgttttcgaaaacccgcg
aagcttctgattggtcaagcgctgaaattattgtgtaatatcacgtgact
taggtaggatttcctacctaacctcggcacacttttcagcaaaagcacga
tatctatctagcccttcgggctttataatcTATGAGTCTAAAGACAAATC
Acgtttttactcgaaatttttttgtgcttgttacatgacatttatttctg
attgctTCAAATCTATTGACACTATTaaagctgtaagttgtaaagcaagt
aacatgggataaaatcacgtgaactttttcgagtaatcacatgttttgac
agcattgatataattttgcaatccGTGTATTAGTCATTACAGCTCGCCAC
CACAACTTCCCGGAATTTTAGCTTACTCTACGACtatcttatcggccaaa
acttagtcggccctaagtgactaaattttggcttggtgactaaaattatg
gccgactaaaaatttgggccgactaaaatttaggccaaattgaaagttta
taattaagctttccttaaccCACTTTTCATATCG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041411	XLOC_041411	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_451	supercontig	scaffold_451:534767..541700 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.4699	33.7841	13.6129	11.2881	24.2276	18.3283	26.5837	28.2799	41.8547	32.8684	37.9895	33.5189	46.2625	43.2093	60.63	99.4738	35.8735	33.8098	41.9816	49.3608	16.0596	16.2726	36.5516	34.0116	40.6452	36.7291	32.7143	30.098	66.472	48.8307

Blast

[Close]

BLAST of TCONS_00066158 vs. Swiss-Prot (Human)
Match: CATC (Dipeptidyl peptidase 1 OS=Homo sapiens GN=CTSC PE=1 SV=2)

HSP 1 Score: 409.453 bits (1051), Expect = 1.120e-134
Identity = 213/457 (46.61%), Postives = 290/457 (63.46%), Query Frame = 3

Query:   66 AAVRCDVPTNCSYPEVVGKWTFYIGQSNFTTGYQCPLEGKVDPVEKIHLELMFPDKVMDSDGNMGTWTMVYNQGFDVSIKGRRFFAFLQYKEIVKDVIVSICNVTFTGWVRDELNTQQPVFPVQNWGCYYGVKDQGPAKRKVHVRPSRSHFLESQ-RYGDK-----SDYVQRLNNHQSTWRAAEYPRFENMTISDMIQLAGGR-KNVPNVRPSEITPEMREMVKDLPESFDWRNKEGQSYVTPVRNQGSCGSCYSFGSMGALEAGVAIATNGRIKPVFSPQYIVSCSNYSQGCDGGFPYLIAGKFAQDYGAILEQEYPYIGKDASCP-QDFIPSVHVSAYGYVGGFYGGCNEALMRMALHKVGPLVIGFNVTNEFFQYKSGIYTQPEMLEDDPGYNPFEVTNHAVLLVGYGVE--DGMKYWTVKNSWGTEWGEEGYFRIRRGTDELAIETMAVWAVP 1406
             AVRCD P NC+Y +++G W F +G S       C + G  +    ++L+ +  D   D  GN G +T++YNQGF++ +   ++FAF +YKE    V  + CN T TGWV D L         +NW C+ G K  G A   V+V  + +H   SQ +Y ++      ++V+ +N  Q +W A  Y  +E +T+ DMI+ +GG  + +P  +P+ +T E+++ +  LP S+DWRN  G ++V+PVRNQ SCGSCYSF SMG LEA + I TN    P+ SPQ +VSCS Y+QGC+GGFPYLIAGK+AQD+G + E  +PY G D+ C  ++     + S Y YVGGFYGGCNEALM++ L   GP+ + F V ++F  YK GIY    +   DP +NPFE+TNHAVLLVGYG +   GM YW VKNSWGT WGE GYFRIRRGTDE AIE++AV A P
Sbjct:   20 GAVRCDTPANCTYLDLLGTWVFQVGSSGSQRDVNCSVMGPQEKKVVVYLQKL--DTAYDDLGNSGHFTIIYNQGFEIVLNDYKWFAFFKYKEEGSKV-TTYCNETMTGWVHDVLG--------RNWACFTG-KKVGTASENVYV--NIAHLKNSQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQQKILHLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGL--RDP-FNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATP 459

The following BLAST results are available for this feature:

BLAST of TCONS_00066158 vs. Swiss-Prot (Human)

BLAST of TCONS_00066158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CATC	1.120e-134	46.61	Dipeptidyl peptidase 1 OS=Homo sapiens GN=CTSC PE=...	[more]

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TCONS_00066158 (transcript) - C. hemisphaerica