TCONS_00066170 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066170
Unique NameTCONS_00066170
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066170 ID=TCONS_00066170|Name=TCONS_00066170|organism=Clytia hemisphaerica|type=transcript|length=456bp
TCCTTGAGCAACTCCCCTCTTCGCAACTTGGAACAAAGACTTATTGGGAT
GATATTTACGAGAAGGAATTAAAGAATTTCGCCGAAAATGAAGACGACGA
AGGTGAAAATTGgtttggTCACCAACGTATGGTAAAGGTTATTAAGTACA
TTATGAAACAAAAAGATGTTTTACCGTTGGattcaaacattttggatgtt
GGGTGTGGTAATGGATTGTTTGTTCACCATATGGTGGAAGAAGGTTATAG
CAATGTTTATGGTATTGATTATTCACAACAAGCCATCGAGCTTGCTGATG
CTATCGCACTTTCAAGAGACGTCAAAACACAATGTCATTTCTCTCAAGCT
GATTTTCTCGACCCATCCACGTGGAAAATAAATgacgtcactttcgattt
atGCCATGACAAAGGAACTTTCGATGCCGTATGTTTGAATCCAGACAATG
CACAAG
Run BLAST on NCBI

transcript from alignment at scaffold_451:917276..923316+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066170 ID=TCONS_00066170|Name=TCONS_00066170|organism=Clytia hemisphaerica|type=transcript|length=6041bp|location=Sequence derived from alignment at scaffold_451:917276..923316+ (Clytia hemisphaerica)
TCCTTGAGCAACTCCCCTCTTCGCAACTTGGAACAAAGACTTAGTAAGTG TTACTTGAATTTTTAGGCGCTCCAAATAAgcggttcgaataaacgggggg gcggtggtttggaaaattttcgaggtTTTAATAAATGGGTCTAATTGCTG GGgggtggaaattgtacttctgaaaacccaaaaataaggtaaatataggc taaaatcaggctatttagagcaaaaataaggggccttctaaTTCCGAATA AGGTCCGGGGGCTtggggaattttcaaaaaattaacaagcgagggggggg cgtttatttggaacctaagagtaattatctacttttattttattttttag gattttttgtGTCTCTTTATGAGTCCCCTTTAAGACATCTATCACCTTTt ttagatacacgttttttttataagaacatccaaaaatttttgaagccttt ggatgctcttaacttttgagttttaagcctaaaaatgttcttaacttgtt cttaatttcaccagtttttgagaattttggttcattttgctaagaaatta ggtgttttaaAGTCTGCAATTGAGTCTGCgaagttcttaatattttggcc atgaatttcatagcttgttcttatgaaaaaaacatgTTCTTCGCTCCAGA TACAATCGTGCTTTCTTTCTACTAGTTGGGATGATATTTACGAGAAGGAA TTAAAGAATTTCGCCGAAAATGAAGACGACGAAGGTGAAAATTGGTaagc agaaaaaatatttgtgtttTGAGTTGTAActgtattgggctcttccagaa aatgtccgtacatggggcgatatattgtccgggggatattgaaaaatcat taaaatttgccttgtccgggggggggggggaaatttttTNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNgggggggggggggggtaaatttgctctgtcc gggggtaaaacccgttgtccgggaggccaaaagtcactttgtccgggggg taaatcactgaaaatcttTGTATCCTCCACTCCCCATATTTGAGCCCatt acagtagagtctccataactcgaacctctataactcgaatgtctccttaa ttcgaacaagttttgTAGGTCTCTTCAGTTGACAAtttcttataaacctt actccataacacGAGCAAATGTTTGTTCCCCGTTGTGAGTGTTGGAGTTC TAGAGACTTCATTGTACTAttcgtgatatgcaccactggagagtcttctg agaacttttaaaatcttccacccaatacgtcacttaaacaataggataag tgacgtattgggtggaacaaaaacagaatagttgcataatttcgtgaagt cattacagtggtgcatatcatgaatttcacCTAATTTTGATTCGCTGCAA GTGGttcagaccatgttcgcacatgacggttccgtttcgctccgaaacgt aatgaagccattctattggttacattcaagtgttacgtcacttctaaata aaacttttcggccatccgccaaatagAATTCCCGCCAGAATTTCTTCCTC TAAGGTCAAACAGGTCTTgaaatagcgctccgcaacgcataTGTCATAAt taatttaataattttaatttaaaaataatttttgacatttgtacgagtta cgatcccacaattcaatgcggTTCAATTtaagatacgtgcaagttgttat atatcttttgtcaaatgatgcaattaacgtgcaaaagagattaacgcaaa ggttggtgggattggaactcgtacaaacacatcgaaagtaatgattatgt cataagtaaaatccatttttagaTGCGGTGTGCTATTATTAGAGTATGGG TCTTCGAATGGCAGATATAACATTATGTACAAATGACATAATACAAGATG AATAAAGTAGACGAGAGTGACGCCCCTCAAACAACATAACATCTATCTAC AGTTCCTTCCGTTTTGTAGTTGGGCAAAGATTCTCACAACGAGAGTGACG CCCCTCAAACAACATAACATCTATCTACAGTTCCTTCCGTTTTCTAGTTG GGCAAAGATTCTCACAACGAGAGGGACGCCCCTCAAACAACATAACATCT ATCTACAGTTCCTTCCGTTTTGTGGTTCTTCATCAAGTTGGAAATGAGCG AGAAGCGATAAGATCTCAGCTAATGCTAGTGTGAAATTAACAACTAAGAA ACTGTGCAATTTTATAGGTGTTAGATCGAAGTTTGGATGGAATAATAAGT AACGTCAAGTAACGTTCAATACTGATAGCTATAATCCCCCAACAAATATC TTGAGACAGAAGAATTCTAAACATTTTTGCAAGATGAAAATCCGTCCCCT AGACCCCACTATCAGTGTAGAGTCTGGAAATGGCCGGGAACTCAACGCTG ACAGTGGGGGGAGGAGGGAGACCACGTGAAGTGTCTCAGATATAAATTGG GGGATTGTAGAATGACTCAAACAACCTGCCAGCATGGCTGAGATCGATTC CACagatttaaaaagtgaaaacgAGAATATTCCAtttatttttcaggttt ggTCACCAACGTATGGTAAAGGTTATTAAGTACATTATGAAACAAAAAGA TGTTTTACCGTTGGattcaaacattttggatgttGGGTGTGGTAATGGAT TGTTTGTTCACCATATGGTATGTCTGGATTATAATCAATGTTTAAGACAC AGTTCATCTATTGTTTCTAGCTGACCCAAAAAGAAActtatacgcatgcg taatttatcgTTCTTCAAACCGCTAGTTGTTAAGTAGCGTAAAATACAAA GAGTAACGTAAGGGTGGTGTCACTTTTAAGGTTTATTTTAAGAATCCGTA CCGAAGAAGATTTTATAGGAGTTCTAaagagatttttcatttttccaggg gataaaaagttattttaaaacTTCCAGGGGGGTAAATGATttatttcagt attttagttcgtCAATACTCATTTTAGGGTATGAAGATTTTTCCAAGGAT TTTCTGCAAATTCTccaccagggggggggggaatatttttgacttgaaaa tgttcgtccacccacAACCCCCCCTGTACAGTTATTAAACATAGGTTGTT AAAATTGGTGAAATATACCTAAGAAATTTTTCGCCATttttggtgcaatt tggcggaatttattttggcgaacgacctatttttgttcaatattttagct gaaaaaagaggaaaaaaggatttttaagagaaatactttaatgggataaa ctttcgcggggattaaatttcgcggatttcgcggatgggtgtcatccgcg aaattaagtcccaatggaaatttagaacggcctcatccgcgaaatatttc taaacaaaactcaaaatatgtcaaataaatactatttgaatggttagttg catcaaagaagcgcaaataatgtgtatttcaacaaccaacatgcttgatt tgacagtaaaagtcaaaaaatcatgaaaatattgccacccaatagtgcca cccacgaaatttaatccccgcgaaagtttatcccattaaagtagacaCTA AGTTgatagaaaattaaatttggcgagaatttattttggcgaatgatcta taaatttaaatttggcggaaagaaattttggcgaatctGGCGAAATTTTt aggcaattcgccaaattcgccaaaaaaattttttgccaaaatttgttccc ttaaggtaaatcTGTTNAATTTTtaggcaattcgccaaattcgccaaaaa aaaatttgccaaaatttgttcccttaaggtagatctgttttgtttctttt gaacAGGTGGAAGAAGGTTATAGCAATGTTTATGGTATTGATTATTCACA ACAAGCCATCGAGCTTGCTGATGCTATCGCACTTTCAAGAGACGTCAAAA CACAATGTCATTTCTCTGTGAGTCTTCcataaaatatgatttttttgtca cattaaaggttttatttttacataagtgtgtCCGTTTCATCTCAGGCaaa tgtttcatatcaggacagtgtctgttatgttatgctgatataggcaaaaa acgtttttcttttcctctttttaacaAATCTTGCTCCATATCCGTACCAA TCCAATGTGTAAAagcttataaattaaaattgacgagtaagcaaacgata tcactcttatttaaaaacaaaacctttaaagtgcGATCTCATCGTAACAG TAAAGTAGACTAGCACGCTAGTCAGGCTGGAACGATATCACGCGGGGGGG GAGGAAGAAAGTAAGCATatgagttaggtaagcgtatgAAGAAAGTTTTT GGCCGGGAGGGGCTGAAAAAACCCTTTCGCCTACATTTATATGTTtccct acgcagctcctattttaGCAAACGGCCGCTTCCCtcatgttcccgccctc tggcatgattaattaacaggcTAGTTGCTTGTCTAGCATTAAATCAGAAG GGGTTGAAATTACTTCATTTCTCTCAATTagaaacaaaatttgtaaaata aataacaaattaaTCAGTTTTaaataattatcttttcaacgaccGCTCAA ATCTTAATCTGTTTTCATacacgttttgttttttttaagaaactagtttt accaagcagcctcaatgtttcttaggAAATCGGCCTTTTTAACCTTCTAA ACATTTTCACATAATCAgactatttttcatgcaaagaaaaaaaaatttgt tttgattggaaggttcttaaaaaaactaataaaaaatgttattttctcat tctcggcatgtttcttagatgtttcttagtttttaggcattctgagcctc atggcTCTTAaaagtgtttcttaaaaaaaaaacgtgtactctaaCAAAAG TTTAAGACTATGCTCAGACGTTACGGTTACGTAACTCCGATAAAAATAGT TGATAAAGCTTGGTCAAGGGTATAAAAAGTATAAGCACTCTCAAAAAAGT CCACCCGGCCGATTTCCGGAAGCAACACTTTGTTGGCCTCAGTGGTTAGG AGACAACattaaacaacattttttttttgcaaaactttGTGCGGTAATAC GGTAGTAAAAGCATAACTAGATCTTCACTTGTTTACCTAAATTTGAGAAG GTTCCAGTCAGATACAGTCAATTTCTCTAATTCTACCCTCtatactattc gaatctttctatggAATAAATATACTTATagataattcgaactaaaatgt tGGTCGCCTTAGCTGAaaattagtataaaatactttcggtaattcgaatt tttctctaattcaaaaaatttttggtcccagaaagatcgaattagagaga gtcaaatGTGAATCGGTAATTTTTATTAAGTTTGTCATTAAtcgaatttt tctctaatttaaggaaaattttttgatcccttgaatatcgaattagagag agtcaaaaGTGAATCGGTAATTTTTATTAAGTTTGTCATTAATCTAATAT ATGTCTTTTTCTTGCATTCTTTTTAAAAGCAAGCTGATTTTCTCGACCCA TCCACGTGGAAAATAAATgacgtcactttcgatttatGCCATGACAAAGG AACTTTCGATGCCGTATGTTTGAATCCAGACAATGCACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041418XLOC_041418Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066170-exon-scaffold_451-1491911889:917276..917318TCONS_00066170-exon-scaffold_451-1491911889:917276..917318Clytia hemisphaericaexon
TCONS_00066170-exon-scaffold_451-1510915933:917276..917318TCONS_00066170-exon-scaffold_451-1510915933:917276..917318Clytia hemisphaericaexon
TCONS_00066170-exon-scaffold_451-1575043694:917276..917318TCONS_00066170-exon-scaffold_451-1575043694:917276..917318Clytia hemisphaericaexon
TCONS_00066170-exon-scaffold_451-1491911889:917951..918019TCONS_00066170-exon-scaffold_451-1491911889:917951..918019Clytia hemisphaericaexon
TCONS_00066170-exon-scaffold_451-1510915933:917951..918019TCONS_00066170-exon-scaffold_451-1510915933:917951..918019Clytia hemisphaericaexon
TCONS_00066170-exon-scaffold_451-1575043694:917951..918019TCONS_00066170-exon-scaffold_451-1575043694:917951..918019Clytia hemisphaericaexon
TCONS_00066170-exon-scaffold_451-1491911889:920272..920392TCONS_00066170-exon-scaffold_451-1491911889:920272..920392Clytia hemisphaericaexon
TCONS_00066170-exon-scaffold_451-1510915933:920272..920392TCONS_00066170-exon-scaffold_451-1510915933:920272..920392Clytia hemisphaericaexon
TCONS_00066170-exon-scaffold_451-1575043694:920272..920392TCONS_00066170-exon-scaffold_451-1575043694:920272..920392Clytia hemisphaericaexon
TCONS_00066170-exon-scaffold_451-1491911889:921532..921642TCONS_00066170-exon-scaffold_451-1491911889:921532..921642Clytia hemisphaericaexon
TCONS_00066170-exon-scaffold_451-1510915933:921532..921642TCONS_00066170-exon-scaffold_451-1510915933:921532..921642Clytia hemisphaericaexon
TCONS_00066170-exon-scaffold_451-1575043694:921532..921642TCONS_00066170-exon-scaffold_451-1575043694:921532..921642Clytia hemisphaericaexon
TCONS_00066170-exon-scaffold_451-1491911889:923205..923316TCONS_00066170-exon-scaffold_451-1491911889:923205..923316Clytia hemisphaericaexon
TCONS_00066170-exon-scaffold_451-1510915933:923205..923316TCONS_00066170-exon-scaffold_451-1510915933:923205..923316Clytia hemisphaericaexon
TCONS_00066170-exon-scaffold_451-1575043694:923205..923316TCONS_00066170-exon-scaffold_451-1575043694:923205..923316Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:917276..923316 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 1.93506 1.24258 6.92382 1.77503 2.60515 0.607915 0.298136 1.5723 0.827234 0 0 0 0 0 0 0 0 0 0 0 6.57959 8.95016 0 0 0 0
Blast
BLAST of TCONS_00066170 vs. Swiss-Prot (Human)
Match: EFMT2 (EEF1A lysine methyltransferase 2 OS=Homo sapiens GN=EEF1AKMT2 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.257e-35
Identity = 64/144 (44.44%), Postives = 96/144 (66.67%), Query Frame = 3
Query:   21 SQLGTKTYWDDIYEKELKNFAENEDDEGENWFGHQRMVKVIKYIMKQKDVLPLDSNILDVGCGNGLFVHHMVEEGYSNVYGIDYSQQAIELADAIALSRDVKTQCHFSQADFLDPSTWKINDVTFDLCHDKGTFDAVCLNPDNA 452
            S LGT+ +WD +YE+EL+ F E   D GE WFG + M ++I+++ K K  +PLD+++LD+G GNG+F+  + + G+SN+ GIDYS  AI+L+ +I + ++  +       DFL+ ST       F +C DKGTFDA+ LNPDNA
Sbjct:   30 SALGTREHWDAVYERELQTFREY-GDTGEIWFGEESMNRLIRWMQKHK--IPLDASVLDIGTGNGVFLVELAKFGFSNITGIDYSPSAIQLSGSI-IEKEGLSNIKLKVEDFLNLST---QLSGFHICIDKGTFDAISLNPDNA 166          
The following BLAST results are available for this feature:
BLAST of TCONS_00066170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EFMT21.257e-3544.44EEF1A lysine methyltransferase 2 OS=Homo sapiens G... [more]
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