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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066170 ID=TCONS_00066170|Name=TCONS_00066170|organism=Clytia hemisphaerica|type=transcript|length=456bp TCCTTGAGCAACTCCCCTCTTCGCAACTTGGAACAAAGACTTATTGGGAT GATATTTACGAGAAGGAATTAAAGAATTTCGCCGAAAATGAAGACGACGA AGGTGAAAATTGgtttggTCACCAACGTATGGTAAAGGTTATTAAGTACA TTATGAAACAAAAAGATGTTTTACCGTTGGattcaaacattttggatgtt GGGTGTGGTAATGGATTGTTTGTTCACCATATGGTGGAAGAAGGTTATAG CAATGTTTATGGTATTGATTATTCACAACAAGCCATCGAGCTTGCTGATG CTATCGCACTTTCAAGAGACGTCAAAACACAATGTCATTTCTCTCAAGCT GATTTTCTCGACCCATCCACGTGGAAAATAAATgacgtcactttcgattt atGCCATGACAAAGGAACTTTCGATGCCGTATGTTTGAATCCAGACAATG CACAAG Run BLAST on NCBI transcript from alignment at scaffold_451:917276..923316+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066170 ID=TCONS_00066170|Name=TCONS_00066170|organism=Clytia hemisphaerica|type=transcript|length=6041bp|location=Sequence derived from alignment at scaffold_451:917276..923316+ (Clytia hemisphaerica) TCCTTGAGCAACTCCCCTCTTCGCAACTTGGAACAAAGACTTAGTAAGTG
TTACTTGAATTTTTAGGCGCTCCAAATAAgcggttcgaataaacgggggg
gcggtggtttggaaaattttcgaggtTTTAATAAATGGGTCTAATTGCTG
GGgggtggaaattgtacttctgaaaacccaaaaataaggtaaatataggc
taaaatcaggctatttagagcaaaaataaggggccttctaaTTCCGAATA
AGGTCCGGGGGCTtggggaattttcaaaaaattaacaagcgagggggggg
cgtttatttggaacctaagagtaattatctacttttattttattttttag
gattttttgtGTCTCTTTATGAGTCCCCTTTAAGACATCTATCACCTTTt
ttagatacacgttttttttataagaacatccaaaaatttttgaagccttt
ggatgctcttaacttttgagttttaagcctaaaaatgttcttaacttgtt
cttaatttcaccagtttttgagaattttggttcattttgctaagaaatta
ggtgttttaaAGTCTGCAATTGAGTCTGCgaagttcttaatattttggcc
atgaatttcatagcttgttcttatgaaaaaaacatgTTCTTCGCTCCAGA
TACAATCGTGCTTTCTTTCTACTAGTTGGGATGATATTTACGAGAAGGAA
TTAAAGAATTTCGCCGAAAATGAAGACGACGAAGGTGAAAATTGGTaagc
agaaaaaatatttgtgtttTGAGTTGTAActgtattgggctcttccagaa
aatgtccgtacatggggcgatatattgtccgggggatattgaaaaatcat
taaaatttgccttgtccgggggggggggggaaatttttTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNgggggggggggggggtaaatttgctctgtcc
gggggtaaaacccgttgtccgggaggccaaaagtcactttgtccgggggg
taaatcactgaaaatcttTGTATCCTCCACTCCCCATATTTGAGCCCatt
acagtagagtctccataactcgaacctctataactcgaatgtctccttaa
ttcgaacaagttttgTAGGTCTCTTCAGTTGACAAtttcttataaacctt
actccataacacGAGCAAATGTTTGTTCCCCGTTGTGAGTGTTGGAGTTC
TAGAGACTTCATTGTACTAttcgtgatatgcaccactggagagtcttctg
agaacttttaaaatcttccacccaatacgtcacttaaacaataggataag
tgacgtattgggtggaacaaaaacagaatagttgcataatttcgtgaagt
cattacagtggtgcatatcatgaatttcacCTAATTTTGATTCGCTGCAA
GTGGttcagaccatgttcgcacatgacggttccgtttcgctccgaaacgt
aatgaagccattctattggttacattcaagtgttacgtcacttctaaata
aaacttttcggccatccgccaaatagAATTCCCGCCAGAATTTCTTCCTC
TAAGGTCAAACAGGTCTTgaaatagcgctccgcaacgcataTGTCATAAt
taatttaataattttaatttaaaaataatttttgacatttgtacgagtta
cgatcccacaattcaatgcggTTCAATTtaagatacgtgcaagttgttat
atatcttttgtcaaatgatgcaattaacgtgcaaaagagattaacgcaaa
ggttggtgggattggaactcgtacaaacacatcgaaagtaatgattatgt
cataagtaaaatccatttttagaTGCGGTGTGCTATTATTAGAGTATGGG
TCTTCGAATGGCAGATATAACATTATGTACAAATGACATAATACAAGATG
AATAAAGTAGACGAGAGTGACGCCCCTCAAACAACATAACATCTATCTAC
AGTTCCTTCCGTTTTGTAGTTGGGCAAAGATTCTCACAACGAGAGTGACG
CCCCTCAAACAACATAACATCTATCTACAGTTCCTTCCGTTTTCTAGTTG
GGCAAAGATTCTCACAACGAGAGGGACGCCCCTCAAACAACATAACATCT
ATCTACAGTTCCTTCCGTTTTGTGGTTCTTCATCAAGTTGGAAATGAGCG
AGAAGCGATAAGATCTCAGCTAATGCTAGTGTGAAATTAACAACTAAGAA
ACTGTGCAATTTTATAGGTGTTAGATCGAAGTTTGGATGGAATAATAAGT
AACGTCAAGTAACGTTCAATACTGATAGCTATAATCCCCCAACAAATATC
TTGAGACAGAAGAATTCTAAACATTTTTGCAAGATGAAAATCCGTCCCCT
AGACCCCACTATCAGTGTAGAGTCTGGAAATGGCCGGGAACTCAACGCTG
ACAGTGGGGGGAGGAGGGAGACCACGTGAAGTGTCTCAGATATAAATTGG
GGGATTGTAGAATGACTCAAACAACCTGCCAGCATGGCTGAGATCGATTC
CACagatttaaaaagtgaaaacgAGAATATTCCAtttatttttcaggttt
ggTCACCAACGTATGGTAAAGGTTATTAAGTACATTATGAAACAAAAAGA
TGTTTTACCGTTGGattcaaacattttggatgttGGGTGTGGTAATGGAT
TGTTTGTTCACCATATGGTATGTCTGGATTATAATCAATGTTTAAGACAC
AGTTCATCTATTGTTTCTAGCTGACCCAAAAAGAAActtatacgcatgcg
taatttatcgTTCTTCAAACCGCTAGTTGTTAAGTAGCGTAAAATACAAA
GAGTAACGTAAGGGTGGTGTCACTTTTAAGGTTTATTTTAAGAATCCGTA
CCGAAGAAGATTTTATAGGAGTTCTAaagagatttttcatttttccaggg
gataaaaagttattttaaaacTTCCAGGGGGGTAAATGATttatttcagt
attttagttcgtCAATACTCATTTTAGGGTATGAAGATTTTTCCAAGGAT
TTTCTGCAAATTCTccaccagggggggggggaatatttttgacttgaaaa
tgttcgtccacccacAACCCCCCCTGTACAGTTATTAAACATAGGTTGTT
AAAATTGGTGAAATATACCTAAGAAATTTTTCGCCATttttggtgcaatt
tggcggaatttattttggcgaacgacctatttttgttcaatattttagct
gaaaaaagaggaaaaaaggatttttaagagaaatactttaatgggataaa
ctttcgcggggattaaatttcgcggatttcgcggatgggtgtcatccgcg
aaattaagtcccaatggaaatttagaacggcctcatccgcgaaatatttc
taaacaaaactcaaaatatgtcaaataaatactatttgaatggttagttg
catcaaagaagcgcaaataatgtgtatttcaacaaccaacatgcttgatt
tgacagtaaaagtcaaaaaatcatgaaaatattgccacccaatagtgcca
cccacgaaatttaatccccgcgaaagtttatcccattaaagtagacaCTA
AGTTgatagaaaattaaatttggcgagaatttattttggcgaatgatcta
taaatttaaatttggcggaaagaaattttggcgaatctGGCGAAATTTTt
aggcaattcgccaaattcgccaaaaaaattttttgccaaaatttgttccc
ttaaggtaaatcTGTTNAATTTTtaggcaattcgccaaattcgccaaaaa
aaaatttgccaaaatttgttcccttaaggtagatctgttttgtttctttt
gaacAGGTGGAAGAAGGTTATAGCAATGTTTATGGTATTGATTATTCACA
ACAAGCCATCGAGCTTGCTGATGCTATCGCACTTTCAAGAGACGTCAAAA
CACAATGTCATTTCTCTGTGAGTCTTCcataaaatatgatttttttgtca
cattaaaggttttatttttacataagtgtgtCCGTTTCATCTCAGGCaaa
tgtttcatatcaggacagtgtctgttatgttatgctgatataggcaaaaa
acgtttttcttttcctctttttaacaAATCTTGCTCCATATCCGTACCAA
TCCAATGTGTAAAagcttataaattaaaattgacgagtaagcaaacgata
tcactcttatttaaaaacaaaacctttaaagtgcGATCTCATCGTAACAG
TAAAGTAGACTAGCACGCTAGTCAGGCTGGAACGATATCACGCGGGGGGG
GAGGAAGAAAGTAAGCATatgagttaggtaagcgtatgAAGAAAGTTTTT
GGCCGGGAGGGGCTGAAAAAACCCTTTCGCCTACATTTATATGTTtccct
acgcagctcctattttaGCAAACGGCCGCTTCCCtcatgttcccgccctc
tggcatgattaattaacaggcTAGTTGCTTGTCTAGCATTAAATCAGAAG
GGGTTGAAATTACTTCATTTCTCTCAATTagaaacaaaatttgtaaaata
aataacaaattaaTCAGTTTTaaataattatcttttcaacgaccGCTCAA
ATCTTAATCTGTTTTCATacacgttttgttttttttaagaaactagtttt
accaagcagcctcaatgtttcttaggAAATCGGCCTTTTTAACCTTCTAA
ACATTTTCACATAATCAgactatttttcatgcaaagaaaaaaaaatttgt
tttgattggaaggttcttaaaaaaactaataaaaaatgttattttctcat
tctcggcatgtttcttagatgtttcttagtttttaggcattctgagcctc
atggcTCTTAaaagtgtttcttaaaaaaaaaacgtgtactctaaCAAAAG
TTTAAGACTATGCTCAGACGTTACGGTTACGTAACTCCGATAAAAATAGT
TGATAAAGCTTGGTCAAGGGTATAAAAAGTATAAGCACTCTCAAAAAAGT
CCACCCGGCCGATTTCCGGAAGCAACACTTTGTTGGCCTCAGTGGTTAGG
AGACAACattaaacaacattttttttttgcaaaactttGTGCGGTAATAC
GGTAGTAAAAGCATAACTAGATCTTCACTTGTTTACCTAAATTTGAGAAG
GTTCCAGTCAGATACAGTCAATTTCTCTAATTCTACCCTCtatactattc
gaatctttctatggAATAAATATACTTATagataattcgaactaaaatgt
tGGTCGCCTTAGCTGAaaattagtataaaatactttcggtaattcgaatt
tttctctaattcaaaaaatttttggtcccagaaagatcgaattagagaga
gtcaaatGTGAATCGGTAATTTTTATTAAGTTTGTCATTAAtcgaatttt
tctctaatttaaggaaaattttttgatcccttgaatatcgaattagagag
agtcaaaaGTGAATCGGTAATTTTTATTAAGTTTGTCATTAATCTAATAT
ATGTCTTTTTCTTGCATTCTTTTTAAAAGCAAGCTGATTTTCTCGACCCA
TCCACGTGGAAAATAAATgacgtcactttcgatttatGCCATGACAAAGG
AACTTTCGATGCCGTATGTTTGAATCCAGACAATGCACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00066170-exon-scaffold_451-1491911889:917276..917318 | TCONS_00066170-exon-scaffold_451-1491911889:917276..917318 | Clytia hemisphaerica | exon |
TCONS_00066170-exon-scaffold_451-1510915933:917276..917318 | TCONS_00066170-exon-scaffold_451-1510915933:917276..917318 | Clytia hemisphaerica | exon |
TCONS_00066170-exon-scaffold_451-1575043694:917276..917318 | TCONS_00066170-exon-scaffold_451-1575043694:917276..917318 | Clytia hemisphaerica | exon |
TCONS_00066170-exon-scaffold_451-1491911889:917951..918019 | TCONS_00066170-exon-scaffold_451-1491911889:917951..918019 | Clytia hemisphaerica | exon |
TCONS_00066170-exon-scaffold_451-1510915933:917951..918019 | TCONS_00066170-exon-scaffold_451-1510915933:917951..918019 | Clytia hemisphaerica | exon |
TCONS_00066170-exon-scaffold_451-1575043694:917951..918019 | TCONS_00066170-exon-scaffold_451-1575043694:917951..918019 | Clytia hemisphaerica | exon |
TCONS_00066170-exon-scaffold_451-1491911889:920272..920392 | TCONS_00066170-exon-scaffold_451-1491911889:920272..920392 | Clytia hemisphaerica | exon |
TCONS_00066170-exon-scaffold_451-1510915933:920272..920392 | TCONS_00066170-exon-scaffold_451-1510915933:920272..920392 | Clytia hemisphaerica | exon |
TCONS_00066170-exon-scaffold_451-1575043694:920272..920392 | TCONS_00066170-exon-scaffold_451-1575043694:920272..920392 | Clytia hemisphaerica | exon |
TCONS_00066170-exon-scaffold_451-1491911889:921532..921642 | TCONS_00066170-exon-scaffold_451-1491911889:921532..921642 | Clytia hemisphaerica | exon |
TCONS_00066170-exon-scaffold_451-1510915933:921532..921642 | TCONS_00066170-exon-scaffold_451-1510915933:921532..921642 | Clytia hemisphaerica | exon |
TCONS_00066170-exon-scaffold_451-1575043694:921532..921642 | TCONS_00066170-exon-scaffold_451-1575043694:921532..921642 | Clytia hemisphaerica | exon |
TCONS_00066170-exon-scaffold_451-1491911889:923205..923316 | TCONS_00066170-exon-scaffold_451-1491911889:923205..923316 | Clytia hemisphaerica | exon |
TCONS_00066170-exon-scaffold_451-1510915933:923205..923316 | TCONS_00066170-exon-scaffold_451-1510915933:923205..923316 | Clytia hemisphaerica | exon |
TCONS_00066170-exon-scaffold_451-1575043694:923205..923316 | TCONS_00066170-exon-scaffold_451-1575043694:923205..923316 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_451 | supercontig | scaffold_451:917276..923316 + |
Blast
BLAST of TCONS_00066170 vs. Swiss-Prot (Human)
Match: EFMT2 (EEF1A lysine methyltransferase 2 OS=Homo sapiens GN=EEF1AKMT2 PE=1 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 1.257e-35 Identity = 64/144 (44.44%), Postives = 96/144 (66.67%), Query Frame = 3
Query: 21 SQLGTKTYWDDIYEKELKNFAENEDDEGENWFGHQRMVKVIKYIMKQKDVLPLDSNILDVGCGNGLFVHHMVEEGYSNVYGIDYSQQAIELADAIALSRDVKTQCHFSQADFLDPSTWKINDVTFDLCHDKGTFDAVCLNPDNA 452
S LGT+ +WD +YE+EL+ F E D GE WFG + M ++I+++ K K +PLD+++LD+G GNG+F+ + + G+SN+ GIDYS AI+L+ +I + ++ + DFL+ ST F +C DKGTFDA+ LNPDNA
Sbjct: 30 SALGTREHWDAVYERELQTFREY-GDTGEIWFGEESMNRLIRWMQKHK--IPLDASVLDIGTGNGVFLVELAKFGFSNITGIDYSPSAIQLSGSI-IEKEGLSNIKLKVEDFLNLST---QLSGFHICIDKGTFDAISLNPDNA 166
The following BLAST results are available for this feature:
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