|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066171 ID=TCONS_00066171|Name=TCONS_00066171|organism=Clytia hemisphaerica|type=transcript|length=1162bpRun BLAST on NCBI protein sequence of TCONS_00066171-protein >TCONS_00066171-protein ID=TCONS_00066171-protein|Name=TCONS_00066171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp LEQLPSSQLGTKTYWDDIYEKELKNFAENEDDEGENWFGHQRMVKVIKYIRun BLAST on NCBI transcript from alignment at scaffold_451:917276..948043+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066171 ID=TCONS_00066171|Name=TCONS_00066171|organism=Clytia hemisphaerica|type=transcript|length=30768bp|location=Sequence derived from alignment at scaffold_451:917276..948043+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_451:917276..948043+ >TCONS_00066171 ID=TCONS_00066171|Name=TCONS_00066171|organism=Clytia hemisphaerica|type=CDS|length=9747bp|location=Sequence derived from alignment at scaffold_451:917276..948043+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066171 vs. Swiss-Prot (Human)
Match: EFMT2 (EEF1A lysine methyltransferase 2 OS=Homo sapiens GN=EEF1AKMT2 PE=1 SV=2) HSP 1 Score: 168.703 bits (426), Expect = 2.056e-48 Identity = 85/189 (44.97%), Postives = 126/189 (66.67%), Query Frame = 3
Query: 21 SQLGTKTYWDDIYEKELKNFAENEDDEGENWFGHQRMVKVIKYIMKQKDVLPLDSNILDVGCGNGLFVHHMVEEGYSNVYGIDYSQQAIELADAIALSRDVKTQCHFSQADFLDPSTWKINDVTFDLCHDKGTFDAVCLNPDNAQEKSRLYIKNLKTLLKEGSWFLITSCNWTGDEIKKHFSDGFDFVC 587
S LGT+ +WD +YE+EL+ F E D GE WFG + M ++I+++ K K +PLD+++LD+G GNG+F+ + + G+SN+ GIDYS AI+L+ +I + ++ + DFL+ ST F +C DKGTFDA+ LNPDNA EK + Y+K+L +LK +FLITSCNWT +E+ FS+G+ V
Sbjct: 30 SALGTREHWDAVYERELQTFREY-GDTGEIWFGEESMNRLIRWMQKHK--IPLDASVLDIGTGNGVFLVELAKFGFSNITGIDYSPSAIQLSGSI-IEKEGLSNIKLKVEDFLNLST---QLSGFHICIDKGTFDAISLNPDNAIEKRKQYVKSLSRVLKVKGFFLITSCNWTKEELLNEFSEGWSTVA 211 The following BLAST results are available for this feature:
BLAST of TCONS_00066171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.