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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066174 ID=TCONS_00066174|Name=TCONS_00066174|organism=Clytia hemisphaerica|type=transcript|length=535bp
TACTTTTGGCATAGAGAAGAGCTAAAATTAAGAACTCTGAAAGTTCTTGT
ATAAGATTTAAAGTTAGACAAAGaatcattgaaaaatataacaaaaataa
atcaaaaacgACAAAATGCATTTTAGTTTGTTAtttaaatttgtgatttt
tgcaTTTGTCGGCCATTTATTGGTTCCAGTGGAAGCTGCCGATATCTGTT
CCGTGAAGACGAAGAATGCCGACGATTGTCGGGAGATTTGTTTGCGTTCG
GTGTACTGTCGTTACTTTACTTACGTCACGAATTGGAAAATATGTCATCT
AAAGggACAATACGGTTGGCGACGTACAACGCATCCTAACGCGATCTCTG
GATCAATCACTTTCCCCGAAAATATCCCTGGGGTCGACTTTTACGGTGGT
GATCTTCAATCACCTTGTTAAACGAAAGAagtttttttgtaaagaaagaa
attttgttgttgatttttattgtaatgtacagtagagtctctttaattcg
aacctctataactcgaatgtctccttaactcgaaa Run BLAST on NCBI protein sequence of TCONS_00066174-protein >TCONS_00066174-protein ID=TCONS_00066174-protein|Name=TCONS_00066174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MHFSLLFKFVIFAFVGHLLVPVEAADICSVKTKNADDCREICLRSVYCRY
FTYVTNWKICHLKGQYGWRRTTHPNAISGSITFPENIPGVDFYGGDLQSP
C Run BLAST on NCBI transcript from alignment at scaffold_451:954714..955875+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066174 ID=TCONS_00066174|Name=TCONS_00066174|organism=Clytia hemisphaerica|type=transcript|length=1162bp|location=Sequence derived from alignment at scaffold_451:954714..955875+ (Clytia hemisphaerica)
TACTTTTGGCATAGAGAAGAGCTAAAATTAAGAACTCTGAAAGTTCTTGT
ATAAGATTTAAAGTTAGACAAAGaatcattgaaaaatataacaaaaataa
atcaaaaacgACAAAATGCATTTTAGTTTGTTAtttaaatttgtgatttt
tgcaTTTGTCGGCCATTTATTGGTTCCAGTGGAAGCTGCCGATATCTGTT
CCGTGAAGACGAAGAATGCCGACGATTGTCGGGAGATTTGTTTGCGTTCG
GTGTACTGTCGTTACTTTACTTACGTCACGAATTGGAAAATATGTCATCT
AAAGGTAATACTTTTTAGTCCTACAGTAAaaatcataatatttgagaaaa
aaggagaattcccacgaaatctcataaccacaaacgatttggaagcgcta
aagtcgactttctcgcccgaactttagaatactaaaaacgaggaattaac
caaaattctcaatagattttgaccgAGGCTGTAAATACTCTTGTTTAAAC
TAAAGtgtgtctcaaaagtatgttgacattttactctttcaaaaaaagta
tccacatatttttgagacagactttggAAGTTTTCACCAACTTCTCCTAT
ATGTATATTGCGTACTTATGAACTAAAATCTGTCCCAGCTTGCACACATC
GTTGTTTTAACTTTtgtctaatgttcacaacgtccatataacgttagatg
aacgttgaaacaacgttgtgtgccagctggagatcatcttaaaaaaataa
agaatggtTTATAAgacttaaaaatctttcaaaaattccgaaaatgaaga
tggaaaaaatgacaattttttctACTATAGACCAAAATGGACCAGCATGG
CTGATTTCAAATATACTTTTaggtttttcataattttcttggaaaaaatg
CCTTCCAAAgtacgttttctttttttttaagggACAATACGGTTGGCGAC
GTACAACGCATCCTAACGCGATCTCTGGATCAATCACTTTCCCCGAAAAT
ATCCCTGGGGTCGACTTTTACGGTGGTGATCTTCAATCACCTTGTTAAAC
GAAAGAagtttttttgtaaagaaagaaattttgttgttgatttttattgt
aatgtacagtagagtctctttaattcgaacctctataactcgaatgtctc
cttaactcgaaa Coding sequence (CDS) from alignment at scaffold_451:954714..955875+ >TCONS_00066174 ID=TCONS_00066174|Name=TCONS_00066174|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_451:954714..955875+ (Clytia hemisphaerica)
ATGCATTTTAGTTTGTTAtttaaatttgtgatttttgcaTTTGTCGGCCA
TTTATTGGTTCCAGTGGAAGCTGCCGATATCTGTTCCGTGAAGACGAAGA
ATGCCGACGATTGTCGGGAGATTTGTTTGCGTTCGGTGTACTGTCGTTAC
TTTACTTACGTCACGAATTGGAAAATATGTCATCTAAAGggACAATACGG
TTGGCGACGTACAACGCATCCTAACGCGATCTCTGGATCAATCACTTTCC
CCGAAAATATCCCTGGGGTCGACTTTTACGGTGGTGATCTTCAATCACCT
TGTTAAATGCATTTTAGTTTGTTAtttaaatttgtgatttttgcaTTTGT
CGGCCATTTATTGGTTCCAGTGGAAGCTGCCGATATCTGTTCCGTGAAGA
CGAAGAATGCCGACGATTGTCGGGAGATTTGTTTGCGTTCGGTGTACTGT
CGTTACTTTACTTACGTCACGAATTGGAAAATATGTCATCTAAAGggACA
ATACGGTTGGCGACGTACAACGCATCCTAACGCGATCTCTGGATCAATCA
CTTTCCCCGAAAATATCCCTGGGGTCGACTTTTACGGTGGTGATCTTCAA
TCACCTTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066174-exon-scaffold_451-1491911889:954714..955017 | TCONS_00066174-exon-scaffold_451-1491911889:954714..955017 | Clytia hemisphaerica | exon |
| TCONS_00066174-exon-scaffold_451-1510915933:954714..955017 | TCONS_00066174-exon-scaffold_451-1510915933:954714..955017 | Clytia hemisphaerica | exon |
| TCONS_00066174-exon-scaffold_451-1575043694:954714..955017 | TCONS_00066174-exon-scaffold_451-1575043694:954714..955017 | Clytia hemisphaerica | exon |
| TCONS_00066174-exon-scaffold_451-1491911889:955645..955875 | TCONS_00066174-exon-scaffold_451-1491911889:955645..955875 | Clytia hemisphaerica | exon |
| TCONS_00066174-exon-scaffold_451-1510915933:955645..955875 | TCONS_00066174-exon-scaffold_451-1510915933:955645..955875 | Clytia hemisphaerica | exon |
| TCONS_00066174-exon-scaffold_451-1575043694:955645..955875 | TCONS_00066174-exon-scaffold_451-1575043694:955645..955875 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:954714..955875 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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