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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066175 ID=TCONS_00066175|Name=TCONS_00066175|organism=Clytia hemisphaerica|type=transcript|length=524bp
GCGCGTAAGAGAGTGGAGCCCAGGTCTCCACGTGGAAAAGCTAACATTAT
TAAAGTATTTGTCCGATGATTTTGAAAACATTGATTTACTTTATCTAACT
GAATGGTAAGTAAGAGTTTTTAACAAATAGCTGAGGACGTGATTTCTATC
TGACAGAAAGAAACAACAACATGAATAAAATCAGCCTGGTTCTTGTAGCT
GTCATTCTATTGACTAGCCTTTACGGCACATCCGCTGATATTTGTTCGAT
TAAAACGAGGACTGTCGATGATTGTCGAATGATTTGTAACAAATCGTATA
ATTGTAGATATTTCACTTGGGCCATCACATCAAAGACATGCTACTTAAAG
GGAAGACGAAAGCGCTGGAGCCGACGTCCTCATAACGGAGTGATCTCAGG
ATCTAAGACATTTGATGAAAATATTGTTGGTATCGACTTCAACGGAGGTG
ATATGAGATCACCATGCTAAAATCCTTACATTGTTAATTGGAAATATCCA
ACCGAATTTTAAGATAAATAATTG Run BLAST on NCBI protein sequence of TCONS_00066175-protein >TCONS_00066175-protein ID=TCONS_00066175-protein|Name=TCONS_00066175-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MNKISLVLVAVILLTSLYGTSADICSIKTRTVDDCRMICNKSYNCRYFTW
AITSKTCYLKGRRKRWSRRPHNGVISGSKTFDENIVGIDFNGGDMRSPC Run BLAST on NCBI transcript from alignment at scaffold_451:959416..962048+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066175 ID=TCONS_00066175|Name=TCONS_00066175|organism=Clytia hemisphaerica|type=transcript|length=2633bp|location=Sequence derived from alignment at scaffold_451:959416..962048+ (Clytia hemisphaerica)
GCGCGTAAGAGAGTGGAGCCCAGGTCTCCACGTGGAAAAGCTAACATTAT
TAAAGTATTTGTCCGATGATTTTGAAAACATTGATTTACTTTATCTAACT
GAATGGTAAGTAAGAGTTTTTAACAAATAGCTGAGGACGTGATTTCTATC
TGACAGAAAGAAACAACAACATGAATAAAATCAGGTATGTAAATTTAACT
TCAATTTTTTCCCTTTTGTTGGACTGGAGTCGTTAATAATCTATGTAATA
TTCTTACAACCTTCTTACGTTAGgttcctaattcagactagattaaAACA
TTTAGTACGTaggtctcaagcataaaatggcatttttgtgaaaggagtaa
gccttacttgggggtattggcaatttataattgaaaatgctctaaaaatg
gcattcttagcttgcgtagcaaaattccatgatagtggtattcttagcat
tattcttaattttttgaccattttcatcatggacattcttataaagtgta
ttcttatataaaaaagcgtgtaatattAGTTTGTATTTAAACTAAAGAGG
TTTTTTAGACGTCTAAAACATATATTTTACATTATTTTGTGCTTTTTCTG
TTTATTATCATCTTAATTTCACTCAAttacattttttaaaagaacataaa
aattttttaaagccttttttgGATGTCCTTAACTTTtagagtttcaagcc
taaaaatgttcttaacttgttcttaactttttagccatcgaagccttatt
ttcttatatacacccccttctcacagacctagtgagaccccttcccactg
gataaattggccaaaatattgtccccggtggaaaattgttttccgatttt
tgttccccactgaaaataatcaaataaaccaatcatcGCTGCAAAATATT
CACTATTTATcccattcccactgaatttctgacttgaaaaaaaaagaatt
gaaatcccatgCTATAAAAAGtattggaatatcaatcccaattgagtttc
agtctgttatttttattcccactggcttaaaaatcccaccgggtctgtga
aaagggggtgtgtttgtttttataaaaaaacgtgtacttcatATATGAAT
GGAATTCCTGACCTTTgagtaaaggccggtctccacttgcgtgcactgcg
atcgcactttttcgagcaaagcttccacgctattggtaaAAAAAACGAAG
CAACACCATTAGCGAGATCTGACGTAAcgattgaaaaaagttgaaatgtg
ctcAGCCTTTTTTTCGAGTgtgcgctacatttttatgacgtaatcttttt
tccaagcaaaaaggattgaagctaaaaagtgcgatcgaagcgcgcgcaag
tggagaccagccATAAGAGCAGAAGTAAAGtggtatttttcttcttttct
agCCTGGTTCTTGTAGCTGTCATTCTATTGACTAGCCTTTACGGCACATC
CGCTGATATTTGTTCGATTAAAACGAGGACTGTCGATGATTGTCGAATGA
TTTGTAACAAATCGTATAATTGTAGATATTTCACTTGGGCCATCACATCA
AAGACATGCTACTTAAAGGTTGCCTCAGTTTTTATTAGTACTTTTccctt
tttataattcgaaaattttgaatGCAATTTTGGGGAAATAGTCTCTATCG
GGGTCCAAACCTAGTTGCAAGATGTCGGGTATATCTGAGCCAAAGTTCGA
CAATCGACCCTGAGAAAGACTATTTCCCCAAAATTGCATTCacaaatcac
aaattttgaATTCTAGTCCGAATTTCCTTTTGAGGGcgtcgattttttat
ttttgggtaaatttggaACCCTTAAAGGGACACAAATGCTTTTGTACCCC
TTCGAGGGAATTTTAATAATGCGAAAAAGAGACCCTTCTGGCTAGCACAT
ACCAAACAATACCAAATAATACGATGAAATATGGCACATAAGAGAAAAAT
TACCATTCCTCTTCTCAGAGATATTGACCAGTTCTCATAGAGATTTAGTC
TTGATTGGGCTCTcccagaaaaaatttaaatatgggAGAgttggaggata
taacattttttggaaaatcactcCCCggaaattgtgaattttgacccccc
AGACAACGGATctcacccccggacaagcatcaACTGACCCCCCCCCCCCG
ACATTTGAAATCGATCCTAATTAGAGCgagttttgcagatttttcactac
ctcctggcgaaaatatccaatatatcctccacccccatatacaaaatttt
ctggaagagcccattacaaCAAATGCGCCATCGTAGCTAGTGTattacaa
tcagtgacaaaatacttggcacaaaagggaaatccaccgagAAACTAGTT
TTGAAACTACAATCGATTTGTAaatgctctaaagtaggttcgaagggtag
agttttaacgctagacttaagacttgacAGAGTTTAAACGTAACGCTTTT
ACTTTCTAGGGAAGACGAAAGCGCTGGAGCCGACGTCCTCATAACGGAGT
GATCTCAGGATCTAAGACATTTGATGAAAATATTGTTGGTATCGACTTCA
ACGGAGGTGATATGAGATCACCATGCTAAAATCCTTACATTGTTAATTGG
AAATATCCAACCGAATTTTAAGATAAATAATTG Coding sequence (CDS) from alignment at scaffold_451:959416..962048+ >TCONS_00066175 ID=TCONS_00066175|Name=TCONS_00066175|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_451:959416..962048+ (Clytia hemisphaerica)
ATGAATAAAATCAGCCTGGTTCTTGTAGCTGTCATTCTATTGACTAGCCT
TTACGGCACATCCGCTGATATTTGTTCGATTAAAACGAGGACTGTCGATG
ATTGTCGAATGATTTGTAACAAATCGTATAATTGTAGATATTTCACTTGG
GCCATCACATCAAAGACATGCTACTTAAAGGGAAGACGAAAGCGCTGGAG
CCGACGTCCTCATAACGGAGTGATCTCAGGATCTAAGACATTTGATGAAA
ATATTGTTGGTATCGACTTCAACGGAGGTGATATGAGATCACCATGCTAA
ATGAATAAAATCAGCCTGGTTCTTGTAGCTGTCATTCTATTGACTAGCCT
TTACGGCACATCCGCTGATATTTGTTCGATTAAAACGAGGACTGTCGATG
ATTGTCGAATGATTTGTAACAAATCGTATAATTGTAGATATTTCACTTGG
GCCATCACATCAAAGACATGCTACTTAAAGGGAAGACGAAAGCGCTGGAG
CCGACGTCCTCATAACGGAGTGATCTCAGGATCTAAGACATTTGATGAAA
ATATTGTTGGTATCGACTTCAACGGAGGTGATATGAGATCACCATGCTAA
ATGAATAAAATCAGCCTGGTTCTTGTAGCTGTCATTCTATTGACTAGCCT
TTACGGCACATCCGCTGATATTTGTTCGATTAAAACGAGGACTGTCGATG
ATTGTCGAATGATTTGTAACAAATCGTATAATTGTAGATATTTCACTTGG
GCCATCACATCAAAGACATGCTACTTAAAGGGAAGACGAAAGCGCTGGAG
CCGACGTCCTCATAACGGAGTGATCTCAGGATCTAAGACATTTGATGAAA
ATATTGTTGGTATCGACTTCAACGGAGGTGATATGAGATCACCATGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066175-exon-scaffold_451-1491911889:959416..959599 | TCONS_00066175-exon-scaffold_451-1491911889:959416..959599 | Clytia hemisphaerica | exon |
| TCONS_00066175-exon-scaffold_451-1510915933:959416..959599 | TCONS_00066175-exon-scaffold_451-1510915933:959416..959599 | Clytia hemisphaerica | exon |
| TCONS_00066175-exon-scaffold_451-1575043694:959416..959599 | TCONS_00066175-exon-scaffold_451-1575043694:959416..959599 | Clytia hemisphaerica | exon |
| TCONS_00066175-exon-scaffold_451-1491911889:960818..960983 | TCONS_00066175-exon-scaffold_451-1491911889:960818..960983 | Clytia hemisphaerica | exon |
| TCONS_00066175-exon-scaffold_451-1510915933:960818..960983 | TCONS_00066175-exon-scaffold_451-1510915933:960818..960983 | Clytia hemisphaerica | exon |
| TCONS_00066175-exon-scaffold_451-1575043694:960818..960983 | TCONS_00066175-exon-scaffold_451-1575043694:960818..960983 | Clytia hemisphaerica | exon |
| TCONS_00066175-exon-scaffold_451-1491911889:961875..962048 | TCONS_00066175-exon-scaffold_451-1491911889:961875..962048 | Clytia hemisphaerica | exon |
| TCONS_00066175-exon-scaffold_451-1510915933:961875..962048 | TCONS_00066175-exon-scaffold_451-1510915933:961875..962048 | Clytia hemisphaerica | exon |
| TCONS_00066175-exon-scaffold_451-1575043694:961875..962048 | TCONS_00066175-exon-scaffold_451-1575043694:961875..962048 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:959416..962048 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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