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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066179 ID=TCONS_00066179|Name=TCONS_00066179|organism=Clytia hemisphaerica|type=transcript|length=1513bp
GGCAAGAAAGATGGAGAAAAACAAAGAGAGGAAGAAaggcaaaaagaaag
aaaaaacaaaaaAAATTGCAactgagaaaaaaacaaaaccgatggagagc
gatcaacAAGCAGGAGAAGGGTCTCCCCCACAGGTGCCAGACAAAGTTGA
AGATATGGAGCCTAAAGCAGAGATGGAAAGTGGAACGAAGCAAGGCGATG
GAGAGGAAATGTCGGTTGAGACATCAACACCAATCAATGAAAACCCTCAA
ACAGGAGAAACGAAAgagaacaaaaaagaaaaagactcaGAGAGTCCTCC
AAAAGACACTGCACAGAATGAAACAGATGTCAATAGAAATGTCCCTGAAG
GTCAAGGCCAGACAGTACAAGATTCAGTGAATCCATTGCAAGGCACTACA
GTTGCCACTAAGAATCACGATGAAGGTCTAGAACAATTAGAATCTGAGAA
AATTACTAAAAATGACGAAGATGTGTCCAATGTCGTTGGTCAACTTGTGG
AGAATGTTTCTCAATCAGAAACAGATATTCGAGTGAATGATGAACAACCT
CAGAATAACGAAACTGAAACGAATGCTCAAACTAATGAAGAAGCTAGAGA
CGAAAATTTAGAAGAAACAATTGATAAAAATGACGCAAAAGTAAGTGAAG
AAGACCCACAAATCAACGAAAGCGAGTTGAAAGTTGCTGGTGGAAAAGAA
ACGAAAGACTCAGAAACCATTGAACCATCGAACCATATTGTTAATGGTCA
AAATGCCAACCTAGATGAACGAAATACTGATTCTTCAACTGTTGAAGTAA
ATAAAAACGTGGATAATATCGAGGACAATGAAGCAGATAATGTTGGCAAT
GAGTCTAGATCAAATGAAGTGGACCACCAGACGAATCAGGTGGAGATCAC
TCAGAACAATGCTTCGAATGGTGACTCCACCAAAGATGTAGTAgattcaa
atgaaaataaaactgTCCAATCTGATAACAAAGTATCGAATGATTATAAC
GGCAATGGTGATCAGCACGATACTGATGAGATATCAGCGATGGTAAAACC
TTTGAAAGTTGATAGTATTGATGATAATGGAGCAAATCAAACCTCACAAG
ACACAGGTGAAGCCAATGAAGTTAAGAACAATGAAAATAAGTCTCAGGAA
ACTGTTAATATGATGTCCGAATCGACGAGCCAAGATGTCGATAAGGAGGA
CTTAATGGATGACATTCTTAATACTGATGATGGACTCGTTGACCCAGACA
TTGATAATATTGAGAAGTTAGATACAACAAAACTAAGCGAGGCAAAAGAT
AGTGACCTCATTAGAATTAAAGACGATAGTCCGAATCTCTTcgattcgaa
agagcatgatcGAATATCGAAATCGTCGATTGCAGACGACATCGATCAAT
TCCTCGATGATGAAGAGAACAATGATGATGAAGCAGCGGACGCGCTAACT
GATCAATTGCTGACTCAGCAATTACCAAGTGAAACGAAACAATCGCCGAA
CGTCGAGGCACTG Run BLAST on NCBI protein sequence of TCONS_00066179-protein >TCONS_00066179-protein ID=TCONS_00066179-protein|Name=TCONS_00066179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=504bp
ARKMEKNKERKKGKKKEKTKKIATEKKTKPMESDQQAGEGSPPQVPDKVE
DMEPKAEMESGTKQGDGEEMSVETSTPINENPQTGETKENKKEKDSESPP
KDTAQNETDVNRNVPEGQGQTVQDSVNPLQGTTVATKNHDEGLEQLESEK
ITKNDEDVSNVVGQLVENVSQSETDIRVNDEQPQNNETETNAQTNEEARD
ENLEETIDKNDAKVSEEDPQINESELKVAGGKETKDSETIEPSNHIVNGQ
NANLDERNTDSSTVEVNKNVDNIEDNEADNVGNESRSNEVDHQTNQVEIT
QNNASNGDSTKDVVDSNENKTVQSDNKVSNDYNGNGDQHDTDEISAMVKP
LKVDSIDDNGANQTSQDTGEANEVKNNENKSQETVNMMSESTSQDVDKED
LMDDILNTDDGLVDPDIDNIEKLDTTKLSEAKDSDLIRIKDDSPNLFDSK
EHDRISKSSIADDIDQFLDDEENNDDEAADALTDQLLTQQLPSETKQSPN
VEAL Run BLAST on NCBI transcript from alignment at scaffold_451:1062727..1065092+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066179 ID=TCONS_00066179|Name=TCONS_00066179|organism=Clytia hemisphaerica|type=transcript|length=2366bp|location=Sequence derived from alignment at scaffold_451:1062727..1065092+ (Clytia hemisphaerica)
GGCAAGAAAGATGGAGAAAAACAAAGAGAGGAAGAAaggcaaaaagaaag
aaaaaacaaaaagtaagataattcttttgaaaacaagaacatgTTTAAAA
ATGTCTTAATGCCTTTTAATACTTACTTATTTTCGTGAACAAAAAAGGTT
AAATTGTTATAATGACAAgaatacccctgtgtcacagacccgctgggagc
cCCACTagaaagattgacaaaaatttcgtccccggtgggaaaatacctca
GAATTTCAGCCCACTTGGAAATTCAATGCTTAAGAATTGCACAAAACCAt
tgccactgaattttttaaccttggaacaatagaatttctatccccattgg
gatctTAATAGGAATTCTgaagaaaaagttccaccggggctgtgagacag
aggtgtaCAAGAAAATGATTTGTGTTTTCAGTCAGATTCTTCCCACGTTT
TTTccatgagacaggggtgtactttAGAAAAAAACGGAGGCTGTATTCCT
GCAATACTTtcgctacacgtttttttgtaaggacatccaaagtttttgaa
gcctaagggtgttcttaacttttagtgctttaagcctagaaatgttctta
acatgttcttatttacaccattttgtgagcatttttgtccattttcttaa
gaaattgtgtgttttagagtctgcaaagcccaAAAATGTTCATAGCTTGT
Tcgtaatattttgaccatcgaagccttatgtatgttcttatatagtttgt
tctaataaaaaaacatgtatttttttctttcttgagtCATGCATGTTTTT
CGTTAATCCAACAAGTGAAATATTAAGTGAAGGGTGAATTTAGTTACTTC
CCTCCCTCTGATATTCAAAATACAGCTCGACTAAAATTCTACGTATATCT
CCTCTCGTTTTACAGAAATTGCAactgagaaaaaaacaaaaccgatggag
agcgatcaacAAGCAGGAGAAGGGTCTCCCCCACAGGTGCCAGACAAAGT
TGAAGATATGGAGCCTAAAGCAGAGATGGAAAGTGGAACGAAGCAAGGCG
ATGGAGAGGAAATGTCGGTTGAGACATCAACACCAATCAATGAAAACCCT
CAAACAGGAGAAACGAAAgagaacaaaaaagaaaaagactcaGAGAGTCC
TCCAAAAGACACTGCACAGAATGAAACAGATGTCAATAGAAATGTCCCTG
AAGGTCAAGGCCAGACAGTACAAGATTCAGTGAATCCATTGCAAGGCACT
ACAGTTGCCACTAAGAATCACGATGAAGGTCTAGAACAATTAGAATCTGA
GAAAATTACTAAAAATGACGAAGATGTGTCCAATGTCGTTGGTCAACTTG
TGGAGAATGTTTCTCAATCAGAAACAGATATTCGAGTGAATGATGAACAA
CCTCAGAATAACGAAACTGAAACGAATGCTCAAACTAATGAAGAAGCTAG
AGACGAAAATTTAGAAGAAACAATTGATAAAAATGACGCAAAAGTAAGTG
AAGAAGACCCACAAATCAACGAAAGCGAGTTGAAAGTTGCTGGTGGAAAA
GAAACGAAAGACTCAGAAACCATTGAACCATCGAACCATATTGTTAATGG
TCAAAATGCCAACCTAGATGAACGAAATACTGATTCTTCAACTGTTGAAG
TAAATAAAAACGTGGATAATATCGAGGACAATGAAGCAGATAATGTTGGC
AATGAGTCTAGATCAAATGAAGTGGACCACCAGACGAATCAGGTGGAGAT
CACTCAGAACAATGCTTCGAATGGTGACTCCACCAAAGATGTAGTAgatt
caaatgaaaataaaactgTCCAATCTGATAACAAAGTATCGAATGATTAT
AACGGCAATGGTGATCAGCACGATACTGATGAGATATCAGCGATGGTAAA
ACCTTTGAAAGTTGATAGTATTGATGATAATGGAGCAAATCAAACCTCAC
AAGACACAGGTGAAGCCAATGAAGTTAAGAACAATGAAAATAAGTCTCAG
GAAACTGTTAATATGATGTCCGAATCGACGAGCCAAGATGTCGATAAGGA
GGACTTAATGGATGACATTCTTAATACTGATGATGGACTCGTTGACCCAG
ACATTGATAATATTGAGAAGTTAGATACAACAAAACTAAGCGAGGCAAAA
GATAGTGACCTCATTAGAATTAAAGACGATAGTCCGAATCTCTTcgattc
gaaagagcatgatcGAATATCGAAATCGTCGATTGCAGACGACATCGATC
AATTCCTCGATGATGAAGAGAACAATGATGATGAAGCAGCGGACGCGCTA
ACTGATCAATTGCTGACTCAGCAATTACCAAGTGAAACGAAACAATCGCC
GAACGTCGAGGCACTG Coding sequence (CDS) from alignment at scaffold_451:1062727..1065092+ >TCONS_00066179 ID=TCONS_00066179|Name=TCONS_00066179|organism=Clytia hemisphaerica|type=CDS|length=3024bp|location=Sequence derived from alignment at scaffold_451:1062727..1065092+ (Clytia hemisphaerica)
GCAAGAAAGATGGAGAAAAACAAAGAGAGGAAGAAaggcaaaaagaaaga
aaaaacaaaaaAAATTGCAactgagaaaaaaacaaaaccgatggagagcg
atcaacAAGCAGGAGAAGGGTCTCCCCCACAGGTGCCAGACAAAGTTGAA
GATATGGAGCCTAAAGCAGAGATGGAAAGTGGAACGAAGCAAGGCGATGG
AGAGGAAATGTCGGTTGAGACATCAACACCAATCAATGAAAACCCTCAAA
CAGGAGAAACGAAAgagaacaaaaaagaaaaagactcaGAGAGTCCTCCA
AAAGACACTGCACAGAATGAAACAGATGTCAATAGAAATGTCCCTGAAGG
TCAAGGCCAGACAGTACAAGATTCAGTGAATCCATTGCAAGGCACTACAG
TTGCCACTAAGAATCACGATGAAGGTCTAGAACAATTAGAATCTGAGAAA
ATTACTAAAAATGACGAAGATGTGTCCAATGTCGTTGGTCAACTTGTGGA
GAATGTTTCTCAATCAGAAACAGATATTCGAGTGAATGATGAACAACCTC
AGAATAACGAAACTGAAACGAATGCTCAAACTAATGAAGAAGCTAGAGAC
GAAAATTTAGAAGAAACAATTGATAAAAATGACGCAAAAGTAAGTGAAGA
AGACCCACAAATCAACGAAAGCGAGTTGAAAGTTGCTGGTGGAAAAGAAA
CGAAAGACTCAGAAACCATTGAACCATCGAACCATATTGTTAATGGTCAA
AATGCCAACCTAGATGAACGAAATACTGATTCTTCAACTGTTGAAGTAAA
TAAAAACGTGGATAATATCGAGGACAATGAAGCAGATAATGTTGGCAATG
AGTCTAGATCAAATGAAGTGGACCACCAGACGAATCAGGTGGAGATCACT
CAGAACAATGCTTCGAATGGTGACTCCACCAAAGATGTAGTAgattcaaa
tgaaaataaaactgTCCAATCTGATAACAAAGTATCGAATGATTATAACG
GCAATGGTGATCAGCACGATACTGATGAGATATCAGCGATGGTAAAACCT
TTGAAAGTTGATAGTATTGATGATAATGGAGCAAATCAAACCTCACAAGA
CACAGGTGAAGCCAATGAAGTTAAGAACAATGAAAATAAGTCTCAGGAAA
CTGTTAATATGATGTCCGAATCGACGAGCCAAGATGTCGATAAGGAGGAC
TTAATGGATGACATTCTTAATACTGATGATGGACTCGTTGACCCAGACAT
TGATAATATTGAGAAGTTAGATACAACAAAACTAAGCGAGGCAAAAGATA
GTGACCTCATTAGAATTAAAGACGATAGTCCGAATCTCTTcgattcgaaa
gagcatgatcGAATATCGAAATCGTCGATTGCAGACGACATCGATCAATT
CCTCGATGATGAAGAGAACAATGATGATGAAGCAGCGGACGCGCTAACTG
ATCAATTGCTGACTCAGCAATTACCAAGTGAAACGAAACAATCGCCGAAC
GTCGAGGCACTGGCAAGAAAGATGGAGAAAAACAAAGAGAGGAAGAAagg
caaaaagaaagaaaaaacaaaaaAAATTGCAactgagaaaaaaacaaaac
cgatggagagcgatcaacAAGCAGGAGAAGGGTCTCCCCCACAGGTGCCA
GACAAAGTTGAAGATATGGAGCCTAAAGCAGAGATGGAAAGTGGAACGAA
GCAAGGCGATGGAGAGGAAATGTCGGTTGAGACATCAACACCAATCAATG
AAAACCCTCAAACAGGAGAAACGAAAgagaacaaaaaagaaaaagactca
GAGAGTCCTCCAAAAGACACTGCACAGAATGAAACAGATGTCAATAGAAA
TGTCCCTGAAGGTCAAGGCCAGACAGTACAAGATTCAGTGAATCCATTGC
AAGGCACTACAGTTGCCACTAAGAATCACGATGAAGGTCTAGAACAATTA
GAATCTGAGAAAATTACTAAAAATGACGAAGATGTGTCCAATGTCGTTGG
TCAACTTGTGGAGAATGTTTCTCAATCAGAAACAGATATTCGAGTGAATG
ATGAACAACCTCAGAATAACGAAACTGAAACGAATGCTCAAACTAATGAA
GAAGCTAGAGACGAAAATTTAGAAGAAACAATTGATAAAAATGACGCAAA
AGTAAGTGAAGAAGACCCACAAATCAACGAAAGCGAGTTGAAAGTTGCTG
GTGGAAAAGAAACGAAAGACTCAGAAACCATTGAACCATCGAACCATATT
GTTAATGGTCAAAATGCCAACCTAGATGAACGAAATACTGATTCTTCAAC
TGTTGAAGTAAATAAAAACGTGGATAATATCGAGGACAATGAAGCAGATA
ATGTTGGCAATGAGTCTAGATCAAATGAAGTGGACCACCAGACGAATCAG
GTGGAGATCACTCAGAACAATGCTTCGAATGGTGACTCCACCAAAGATGT
AGTAgattcaaatgaaaataaaactgTCCAATCTGATAACAAAGTATCGA
ATGATTATAACGGCAATGGTGATCAGCACGATACTGATGAGATATCAGCG
ATGGTAAAACCTTTGAAAGTTGATAGTATTGATGATAATGGAGCAAATCA
AACCTCACAAGACACAGGTGAAGCCAATGAAGTTAAGAACAATGAAAATA
AGTCTCAGGAAACTGTTAATATGATGTCCGAATCGACGAGCCAAGATGTC
GATAAGGAGGACTTAATGGATGACATTCTTAATACTGATGATGGACTCGT
TGACCCAGACATTGATAATATTGAGAAGTTAGATACAACAAAACTAAGCG
AGGCAAAAGATAGTGACCTCATTAGAATTAAAGACGATAGTCCGAATCTC
TTcgattcgaaagagcatgatcGAATATCGAAATCGTCGATTGCAGACGA
CATCGATCAATTCCTCGATGATGAAGAGAACAATGATGATGAAGCAGCGG
ACGCGCTAACTGATCAATTGCTGACTCAGCAATTACCAAGTGAAACGAAA
CAATCGCCGAACGTCGAGGCACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066179-exon-scaffold_451-1491911889:1062727..1062788 | TCONS_00066179-exon-scaffold_451-1491911889:1062727..1062788 | Clytia hemisphaerica | exon |
| TCONS_00066179-exon-scaffold_451-1510915933:1062727..1062788 | TCONS_00066179-exon-scaffold_451-1510915933:1062727..1062788 | Clytia hemisphaerica | exon |
| TCONS_00066179-exon-scaffold_451-1575043694:1062727..1062788 | TCONS_00066179-exon-scaffold_451-1575043694:1062727..1062788 | Clytia hemisphaerica | exon |
| TCONS_00066179-exon-scaffold_451-1491911889:1063642..1065092 | TCONS_00066179-exon-scaffold_451-1491911889:1063642..1065092 | Clytia hemisphaerica | exon |
| TCONS_00066179-exon-scaffold_451-1510915933:1063642..1065092 | TCONS_00066179-exon-scaffold_451-1510915933:1063642..1065092 | Clytia hemisphaerica | exon |
| TCONS_00066179-exon-scaffold_451-1575043694:1063642..1065092 | TCONS_00066179-exon-scaffold_451-1575043694:1063642..1065092 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:1062727..1065092 + |
Blast
The following BLAST results are available for this feature:
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