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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066198 ID=TCONS_00066198|Name=TCONS_00066198|organism=Clytia hemisphaerica|type=transcript|length=3298bpRun BLAST on NCBI transcript from alignment at scaffold_451:1331272..1372827+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066198 ID=TCONS_00066198|Name=TCONS_00066198|organism=Clytia hemisphaerica|type=transcript|length=41556bp|location=Sequence derived from alignment at scaffold_451:1331272..1372827+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00066198 vs. Swiss-Prot (Human)
Match: LOXH1 (Lipoxygenase homology domain-containing protein 1 OS=Homo sapiens GN=LOXHD1 PE=2 SV=3) HSP 1 Score: 98.9821 bits (245), Expect = 9.544e-21 Identity = 78/276 (28.26%), Postives = 130/276 (47.10%), Query Frame = 2
Query: 539 ETTEYLVHIITGDKRGAGTDADVFIVFIGTKGESDEYKLKNSVTKHKSFFERDQTDSFEVSVSNDIGHLRKIRIRHNNKGGLAPWYLESVILEDIETESKKHMSAKIWLKKKKS------------LQVELDIPGNSYQLTIYTSDIENAGLDGKIYLRLLGQDAETSEKVVLPGNEVGSIXXXXXXXXELFNRGAEDVFVRKFQDVG-LIERIEVGLXXXXXXXXXXXXXXXXXLLSWHLDKIVLVRLFTEDEAHASVPVNLCFTCNCWFSTNKN 1327
++T + V I TG K+ AGTDA+VFI GT+ ++ LK+S T FERD + F V + D+G L K+R+ H+N G W+++ V ++ WL K + LQ L P Y++T+YTSD+ AG D I++ + G DA +++ L N+ ++ K+ F R + F+ + +DVG +IE+I +G WH + + RL + + + L F C+ W +T+++
Sbjct: 895 KSTTFSVTIKTGVKKNAGTDANVFITLFGTQDDTGMTLLKSSKTNSDK-FERDSIEIFTVE-TLDLGDLWKVRLGHDNTGKAPGWFVDWVEVDAPSLGKCMTFPCGRWLAKNEDDGSIIRDLFHAELQTRLYTPFVPYEITLYTSDVFAAGTDANIFIIIYGCDAVCTQQKYLCTNK--------REQKQFFERKSASRFIVELEDVGEIIEKIRIGHNNTGMNP------------GWHCSHVDIRRLLPDKDGAET----LTFPCDRWLATSED 1144 HSP 2 Score: 88.5817 bits (218), Expect = 1.575e-17 Identity = 66/219 (30.14%), Postives = 112/219 (51.14%), Query Frame = 2
Query: 533 VIETTEYLVHIITGDKRGAGTDADVFIVFIGTKGESDEYKLKNSVTKHKSFFERDQTDSFEVSVSNDIGHLRKIRIRHNNKGGLAPWYLESVIL-EDIETESKK-HMSAKIWLKKKK---SLQVELDIPGNS--------YQLTIYTSDIENAGLDGKIYLRLLGQDAETSEKVVLPGNEVGSIXXXXXXXXELFNRGAEDVFVRKFQDVGLIERIEVG 1150
++ Y V + TG+ GAGTDA+V++ G G++ E L N + FE+ D F + S + ++R++RIRH+ KG + WYL+ V++ E+ + ES WL K K L EL +P +S Y +++ T D+ A D ++Y++L G ++T ++V+L + LK+ F RG D F + ++G I R+ +G
Sbjct: 271 IMGMARYHVTVCTGELEGAGTDANVYLCLFGDVGDTGERLLYNC-RNNTDLFEKGNADEFTIE-SVTMRNVRRVRIRHDGKGSGSGWYLDRVLVREEGQPESDNVEFPCLRWLDKDKDDGQLVREL-LPSDSSATLKNFRYHISLKTGDVSGASTDSRVYIKLYGDKSDTIKQVLLVSDN---------NLKDYFERGRVDEFTLETLNIGNINRLVIG 477 HSP 3 Score: 86.2705 bits (212), Expect = 7.729e-17 Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 2
Query: 530 EVIETTEYLVHIITGDKRGAGTDADVFIVFIGTKGESDEYKLKNSVTKHKSFFERDQTDSFEVSVSNDIGHLRKIRIRHNNKGGLAPWYLESVILEDIETESKKHMSAKIWLKK 871
E++E T Y V + T D GAGTDA+VFI+ G G+S LK S +K FER+ TD+F +GHL K+R+ H+NKG W+L V ++D + H WL K
Sbjct: 1602 EMMEWTSYTVAVKTSDILGAGTDANVFIIIFGENGDSGTLALKQSANWNK--FERNNTDTFNFPDMLSLGHLCKLRVWHDNKGIFPGWHLSYVDVKDNSRDETFHFQCDCWLSK 1713 The following BLAST results are available for this feature:
BLAST of TCONS_00066198 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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