TCONS_00066208 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066208
Unique NameTCONS_00066208
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length874

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066208 ID=TCONS_00066208|Name=TCONS_00066208|organism=Clytia hemisphaerica|type=transcript|length=874bp
ATCGAATCAGACGGTGAGTTTGACACATTTGTTAACACTAATTATGCAAT
TGAGAGTAAATGTAAACTTCTCATGAACAAAGCTGATCACAGGATCAGGG
CCAGTTTGCCAGCCAAGCAGTATCAACCAGTTACAGAGGCTAGTGTATCG
TCCAAAAAAGCGAAATCAGTTGCGCTtccgaaaatgaaaattaaaacttt
ctcaGGAGACCCTACAGAATATCAATCCTTTTCTCAATCGTTCGAAGAGG
CTATCCATAAAAATGGTCATTTATcaaacgtcaaaaaaatgaaCTATTTA
GTATCTTTGTTGGAAGGAGAAGCGTCTGAATGCATTAAAGGCTTGAATCT
TACGAATGAAAATTATGAGGATGCTAGAGAACTTTTAGCTAAAAGATTTG
GTGATAAACAAACCCTTATTTCGGCCCATATGGACGTATTATTGGGATAA
GAGAGTGTTGACGATGAAAAAGACATAAAAGGATTAAGAAAACTGTTCGA
CCGAATTGAATCGTAGGTCAGAAGCCTAGAGGCATTAGATTGCAAGAGTG
AAACTTTCGGGCCAATGCTAATTCCaattgtaattaaaaaattgccaaat
gATTTTCGATTACTCGTTTCAAGAAATACTCCAGGAGAAATTTGGAATAt
aaatgacattttgaaagtttttgaaaatgaactCTCTGCGAgggagaaaa
tttcaaaagatttattttctaACGAAAACAGTTATTATTCAACAACAGAA
AGTTTATTCGTTTCACAAAGAAATAATTATCATCACAAAGAGAAGAGAGA
GGAAAGAAAGAGCGGTGAACAACAAAGAGAAAGGAACTCACCAATGTGCG
TCTTTTGTCGTCGATGCCACGCCT
Run BLAST on NCBI

protein sequence of TCONS_00066208-protein

>TCONS_00066208-protein ID=TCONS_00066208-protein|Name=TCONS_00066208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
IESDGEFDTFVNTNYAIESKCKLLMNKADHRIRASLPAKQYQPVTEASVS
SKKAKSVALPKMKIKTFSGDPTEYQSFSQSFEEAIHKNGHLSNVKKMNYL
VSLLEGEASECIKGLNLTNENYEDARELLAKRFGDKQTLISAHMDVLLG
Run BLAST on NCBI

transcript from alignment at scaffold_451:1439227..1440157+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066208 ID=TCONS_00066208|Name=TCONS_00066208|organism=Clytia hemisphaerica|type=transcript|length=931bp|location=Sequence derived from alignment at scaffold_451:1439227..1440157+ (Clytia hemisphaerica)
ATCGAATCAGACGGTGAGTTTGACACATTTGTTAACACTAATTATGCAAT
TGAGAGTAAATGTAAACTTCTCATGAACAAAGCTGATCACAGGATCAGGG
CCAGTTTGCCAGCCAAGCAGTATCAACCAGTTACAGAGGCTAGTGTATCG
TCCAAAAAAGCGAAATCAGTTGCGCTtccgaaaatgaaaattaaaacttt
ctcaGGAGACCCTACAGAATATCAATCCTTTTCTCAATCGTTCGAAGAGG
CTATCCATAAAAATGGTCATTTATcaaacgtcaaaaaaatgaaCTATTTA
GTATCTTTGTTGGAAGGAGAAGCGTCTGAATGCATTAAAGGCTTGAATCT
TACGAATGAAAATTATGAGGATGCTAGAGAACTTTTAGCTAAAAGATTTG
GTGATAAACAAACCCTTATTTCGGCCCATATGGACGTATTATTGGGATAA
GAGAGTGTTGACGATGAAAAAGACATAAAAGGATTAAGAAAACTGTTCGA
CCGAATTGAATCGTAGGTCAGAAGCCTAGAGGCATTAGACTGCAAGGNAC
TGTTTGACCGAATTGAATCGCAGGTCAGAAGCCTAGAGGCATTAGATTGC
AAGAGTGAAACTTTCGGGCCAATGCTAATTCCaattgtaattaaaaaatt
gccaaatgATTTTCGATTACTCGTTTCAAGAAATACTCCAGGAGAAATTT
GGAATAtaaatgacattttgaaagtttttgaaaatgaactCTCTGCGAgg
gagaaaatttcaaaagatttattttctaACGAAAACAGTTATTATTCAAC
AACAGAAAGTTTATTCGTTTCACAAAGAAATAATTATCATCACAAAGAGA
AGAGAGAGGAAAGAAAGAGCGGTGAACAACAAAGAGAAAGGAACTCACCA
ATGTGCGTCTTTTGTCGTCGATGCCACGCCT

Coding sequence (CDS) from alignment at scaffold_451:1439227..1440157+

>TCONS_00066208 ID=TCONS_00066208|Name=TCONS_00066208|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_451:1439227..1440157+ (Clytia hemisphaerica)
ATCGAATCAGACGGTGAGTTTGACACATTTGTTAACACTAATTATGCAAT
TGAGAGTAAATGTAAACTTCTCATGAACAAAGCTGATCACAGGATCAGGG
CCAGTTTGCCAGCCAAGCAGTATCAACCAGTTACAGAGGCTAGTGTATCG
TCCAAAAAAGCGAAATCAGTTGCGCTtccgaaaatgaaaattaaaacttt
ctcaGGAGACCCTACAGAATATCAATCCTTTTCTCAATCGTTCGAAGAGG
CTATCCATAAAAATGGTCATTTATcaaacgtcaaaaaaatgaaCTATTTA
GTATCTTTGTTGGAAGGAGAAGCGTCTGAATGCATTAAAGGCTTGAATCT
TACGAATGAAAATTATGAGGATGCTAGAGAACTTTTAGCTAAAAGATTTG
GTGATAAACAAACCCTTATTTCGGCCCATATGGACGTATTATTGGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041431XLOC_041431Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066208-proteinTCONS_00066208-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066208-exon-scaffold_451-1491911889:1439227..1439742TCONS_00066208-exon-scaffold_451-1491911889:1439227..1439742Clytia hemisphaericaexon
TCONS_00066208-exon-scaffold_451-1510915933:1439227..1439742TCONS_00066208-exon-scaffold_451-1510915933:1439227..1439742Clytia hemisphaericaexon
TCONS_00066208-exon-scaffold_451-1575043694:1439227..1439742TCONS_00066208-exon-scaffold_451-1575043694:1439227..1439742Clytia hemisphaericaexon
TCONS_00066208-exon-scaffold_451-1491911889:1439800..1440157TCONS_00066208-exon-scaffold_451-1491911889:1439800..1440157Clytia hemisphaericaexon
TCONS_00066208-exon-scaffold_451-1510915933:1439800..1440157TCONS_00066208-exon-scaffold_451-1510915933:1439800..1440157Clytia hemisphaericaexon
TCONS_00066208-exon-scaffold_451-1575043694:1439800..1440157TCONS_00066208-exon-scaffold_451-1575043694:1439800..1440157Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:1439227..1440157 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.16005	0.208099	0.241622	0	0.647509	0.479805	1.30321	1.28426	0.694031	0.925467	0.432406	0.604024	0.517518	1.36337	0.575584	0.71522	0	0.451545	0.283561	0.69778	0.103164	0.0754794	0.12234	0.22245	1.89022	1.24564	0.146307	0.546499	0.118429	0.18099
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005312DUF1759
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top