TCONS_00066213 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066213
Unique NameTCONS_00066213
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066213 ID=TCONS_00066213|Name=TCONS_00066213|organism=Clytia hemisphaerica|type=transcript|length=2305bp
aatttcacaaaaaaatgacTAAAGAAGAACCCCTCCTATGAAATGGACAA
CATTCGAACTTGGTGATAAGATAGACGAGTAAAGCAGTAAAAAATCGTTC
CAGATTCGAAACCAAACAGTAAAGTCGTGACATTGATTACTTAGATAGTA
GCTGgaaattttgcaaaagaaatttaCAGCATATTTATGCTTTAATAACT
GACaagaaatgaatttatttttggtGATCAGTTTGCTTTTTGGATATTGT
TTTATCTCAGTAAATTGCTTATCATTGGCTAGCATTGCAGAATGCCAAGA
TATAGCGCCGTCGGAGCTTTGTCATGATTGTATCAGATATTCGCACGTGT
GCCGGAGATCATGTCACGTGTGCTCAGCTCACGACGAAGAAACAAACGGA
GCAGAAGAAAACAGATTGGATATTTTCCGCAGAGAGATTCTCAAACGCTT
ACGTAATGACCGTATCTCAAGAATCTTACGTCGTGACGAAGACGAACTTG
AAAATGCGCCGTCAAAGCGTCGTGACTTGCCGGCACGTTACGCTTGTTCA
ATCACTGGAGATTGCCATAAAACATAAAGCTTGATAAAATATATAAGTAA
ACGTAAAAtataaatatgaaatattttagaaacATGAAGGTAATCTTTGT
TGTGCAAAGTGCTCTATACCAGGAAAACCAAGTAGAACTGATTTATAATT
AAACATTTATTTGTCAACAAGTAAAAAAACACATTACTGTCATTACTTAA
GTTAATCATTTGACATTTGATAATCCTTCAGGTGAAATTGACGGtaatgt
attttttacttgTTGACAAATAATTGTttaattctgaaatattttaaaga
attcaTTGAGCAAATTTTACAAAACAACCACAACGGTTAACGTTAAGCCT
TTTTGCCTTTTTGTCAGTTGCTATTTTTtcagtacacattttttataagc
aatcaaGTTGCTAAGGGTGCAGCCCTgagaaaggtaaaaaaaattaagta
actTGGCCTTACCAACCTGAAAATGAGCAAGAACTGAGAAAGCaactaaa
aatatctaaaaaaaaggCATTTTCGGCATTATCCAAAATTTGTGAAGTTG
CTtgcatttttggctcaaaatccATAAGCaactttttggctgaaatcctg
aaaatccttagcaactccaaccaatgaagtataagcccgaagggctagaa
gtcaatctccttggtaggatttgaagccaacaaatcctaccaaagttgcg
cggccttgagcggctcgcctggtttttacacaaatgacagattgaaacta
aaatttatcgctatttttcgaaaaaaatatcaattataaacaaaggaatt
gctagattcaatctgtcgtcaaaaatgcagcgcattttttaaggcttcac
tttttcttgcctgagaaaggttagagattgaactctagcccttcgggctt
taaactcaatgactcCAACCCTGAGTTAAAAATTAtggggttgcttataa
aaaaatgtgtaatggTAGTAAAGGACTCTTAGAAGAGGTTTCGATCACAA
TTTGAGATATTTGAAAATTACATGAAAATAAAAGATACAATTTCGTATCA
ATAGCTCTACATAGCgacttacatgtttttttttataagcatcgcGCTTA
TAAGCATAACTAGGCTCATATATgacaaaaatttaagcatatgctaaaca
TTTCTTTGagccttcattttcagaatttgtttgtttttggctggattttt
gaaatttctctaaaattttgcttagaatataagcatccctcaacgcattt
ttcagctttgtaaatctCTCGATCTAAGCATTTCCAAGCcagcttttgga
tttttgtatgcttataaaataaaaaaacatgtatttcttCTATGTTTTTG
AATGTTTCAAATCAATGTGGCTGAAGAAAGTTGATGTTGAGATGATTTAa
ttataaaaagtaaattttcatTTCCTTTTTAAATCATGTTGTTTGTATTa
ttgtgaaaaatttattttcataaatcTTAATTTAGGTATTTCCTAAGTGT
TTGAATGGTAAACCAACTTATATTTTATAGTTTGAATTTATTGATAattc
aatataaagttttaAATAATTGATATATAATAtgctgatttcattttttt
aaagattaattaaaaaatatatggacaCACGTTCTAAAATTAAAAACCAA
GATGAAATAAATATTTACATTAGTCCCTCCCCCTTTTGAccatagataga
tagatagatagatagatagatagatatgccctccgatgtatcggaatggg
tccta
Run BLAST on NCBI

protein sequence of TCONS_00066213-protein

>TCONS_00066213-protein ID=TCONS_00066213-protein|Name=TCONS_00066213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MNLFLVISLLFGYCFISVNCLSLASIAECQDIAPSELCHDCIRYSHVCRR
SCHVCSAHDEETNGAEENRLDIFRREILKRLRNDRISRILRRDEDELENA
PSKRRDLPARYACSITGDCHKT
Run BLAST on NCBI

transcript from alignment at scaffold_451:158236..162223-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066213 ID=TCONS_00066213|Name=TCONS_00066213|organism=Clytia hemisphaerica|type=transcript|length=3988bp|location=Sequence derived from alignment at scaffold_451:158236..162223- (Clytia hemisphaerica)
AATTTCACAAAAAAATGACTAAAGAAGAACCCCTCCTATGAAATGGACAA
CATTCGAACTTGGTGATAAGATAGACGAGTAAAGCAGTAAAAAATCGTTC
CAGATTCGAAACCAAACAGTAAAGTCGTGACATTGATTACTTAGATAGTA
GCTGGAAATTTTGCAAAAGAAATTTACAGCATATTTATGCTTTAATAACT
GACAAGAAATGAATTTATTTTTGGTGATCAGTTTGCTTTTTGGATATTGT
TTTATCTCAGTAAATTGCTTATCATTGGCTAGCATTGCAGGTAAGATAGT
TGTTTCAACGTCAATATTAGGTCCATATAACGTCCATAACGCTTTTAAAC
GTTATTTTGATGTTCTGTATCAGTTTGGATTTCACTCCGAAATGATATTT
TCAAATTTGAAAAAAAAACAAAAAATTCAAAGTTCGCGCGACTTTCAAAT
TTACAAATTTTTAAAACCCGCTGAGATTAGTATGAAGATTTAGCTACAAT
ATGAAGAAAATTCAAAGGAAAGTTCGCAAGATTTATTGTATAGTAAAGTC
TCTTTATCTGGAACAATTATAATTCGAGCAAGTTTTCTCGTCCCTTCAGT
CAATATTACCTTATAAGCTAACTTGACTCCATACATCAAAATTTCCTAAA
GTAAACTTGAATAAATCCAGGCGTTTTCGAGTTATTGAGACTCCACTGGA
ATATATATTCCTTGGGCCACTAAAAGATGAGTTTAAGGCAGATTTTACGC
ATTAATATAAATTAATGGTCTCTTAATATTTCCCCACTTAATTTCAGAAT
GCCAAGATATAGCGCCGTCGGAGCTTTGTCATGATTGTATCAGATATTCG
CACGTGTGCCGGAGATCATGTCACGTGTGCTCAGCTCACGACGAAGAAAC
AAACGGAGCAGAAGAAAACAGATTGGATATTTTCCGCAGAGAGATTCTCA
AACGTAAGCAAAATACACCTATTAAATCTTAGCGTAACCTGTTAGACAAA
ACCCCCTTTCAAACTCAGGTTAAGGAGTTTATTGAAATCAGTGTAAATCC
GCACACCTCTAAATCCGATTAATCGCGATAGTCAGGTTCCATTTCCCGAT
CTTTCCAGTGTGATTTCCCGATTTGGTTTAAGGGATGGGTGAAAACATAA
CAATCTGACGAATATGCAATCTCAAAATCGTAGTAACCGCGTTCGTCTAA
AAGGACTAGGAACGACAACAAAGTTGCGTGATTGTGTTTATGAATAGCAT
GCCGTATCAGCTTTTGAATTTCCGGCGCACAACAAGATTCTTGTTGTATA
ATTTTCCGCGAGAGGACTATTTTCCTCAGATGTTTAATTTTCAAGCGCCT
TCAGAGGTTTAACGTGCGCGTAAGAAAATTATGAACATCTGTTATCAGGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGT
CATCAAAAATACGGCGCATATTTTAAGGCTTCAATTTTTCTTGCCTGAGA
AAGGTTAGAGATTGACCTCTAGCCCTTCGGGCTTGAAACTCAATGCTCCA
ACCCTAACCCTAACTGGGATGATCGATATTCTTATAAAAATGTTTCTTAT
AAAACATCGATATTTATAAGCAGTGTTTCTTATAAAACATCGATATTCCT
ATAAAAAATGTTTCTTATAAAACATCGATATTCCTATAAAAAATGTTTCT
TATAAGGAACCTCCACATCCCCGACCGTTAAAGTGTCCACCCTTACGTCT
TCATTTTGTGGTATATCATCGCGTGTAATAATCGCTTGTGGTTTAAGTTT
ACGCATGCGCATTATATGTGATGTAGTACATTTATATAACATTACGTAAT
GGTTTCTTCCAAATATGGTAATACGAGATTTTGCATTGAACTGACTGTCA
ACAAAAATATATATTGATTAACTTTACAGGCTTACGTAATGACCGTATCT
CAAGAATCTTACGTCGTGACGAAGACGAACTTGAAAATGCGCCGTCAAAG
CGTCGTGACTTGCCGGCACGTTACGCTTGTTCAATCACTGGAGATTGCCA
TAAAACATAAAGCTTGATAAAATATATAAGTAAACGTAAAATATAAATAT
GAAATATTTTAGAAACATGAAGGTAATCTTTGTTGTGCAAAGTGCTCTAT
ACCAGGAAAACCAAGTAGAACTGATTTATAATTAAACATTTATTTGTCAA
CAAGTAAAAAAACACATTACTGTCATTACTTAAGTTAATCATTTGACATT
TGATAATCCTTCAGGTGAAATTGACGGTAATGTATTTTTTACTTGTTGAC
AAATAATTGTTTAATTCTGAAATATTTTAAAGAATTCATTGAGCAAATTT
TACAAAACAACCACAACGGTTAACGTTAAGCCTTTTTGCCTTTTTGTCAG
TTGCTATTTTTTCAGTACACATTTTTTATAAGCAATCAAGTTGCTAAGGG
TGCAGCCCTGAGAAAGGTAAAAAAAATTAAGTAACTTGGCCTTACCAACC
TGAAAATGAGCAAGAACTGAGAAAGCAACTAAAAATATCTAAAAAAAAGG
CATTTTCGGCATTATCCAAAATTTGTGAAGTTGCTTGCATTTTTGGCTCA
AAATCCATAAGCAACTTTTTGGCTGAAATCCTGAAAATCCTTAGCAACTC
CAACCAATGAAGTATAAGCCCGAAGGGCTAGAAGTCAATCTCCTTGGTAG
GATTTGAAGCCAACAAATCCTACCAAAGTTGCGCGGCCTTGAGCGGCTCG
CCTGGTTTTTACACAAATGACAGATTGAAACTAAAATTTATCGCTATTTT
TCGAAAAAAATATCAATTATAAACAAAGGAATTGCTAGATTCAATCTGTC
GTCAAAAATGCAGCGCATTTTTTAAGGCTTCACTTTTTCTTGCCTGAGAA
AGGTTAGAGATTGAACTCTAGCCCTTCGGGCTTTAAACTCAATGACTCCA
ACCCTGAGTTAAAAATTATGGGGTTGCTTATAAAAAAATGTGTAATGGTA
GTAAAGGACTCTTAGAAGAGGTTTCGATCACAATTTGAGATATTTGAAAA
TTACATGAAAATAAAAGATACAATTTCGTATCAATAGCTCTACATAGCGA
CTTACATGTTTTTTTTTATAAGCATCGCGCTTATAAGCATAACTAGGCTC
ATATATGACAAAAATTTAAGCATATGCTAAACATTTCTTTGAGCCTTCAT
TTTCAGAATTTGTTTGTTTTTGGCTGGATTTTTGAAATTTCTCTAAAATT
TTGCTTAGAATATAAGCATCCCTCAACGCATTTTTCAGCTTTGTAAATCT
CTCGATCTAAGCATTTCCAAGCCAGCTTTTGGATTTTTGTATGCTTATAA
AATAAAAAAACATGTATTTCTTCTATGTTTTTGAATGTTTCAAATCAATG
TGGCTGAAGAAAGTTGATGTTGAGATGATTTAATTATAAAAAGTAAATTT
TCATTTCCTTTTTAAATCATGTTGTTTGTATTATTGTGAAAAATTTATTT
TCATAAATCTTAATTTAGGTATTTCCTAAGTGTTTGAATGGTAAACCAAC
TTATATTTTATAGTTTGAATTTATTGATAATTCAATATAAAGTTTTAAAT
AATTGATATATAATATGCTGATTTCATTTTTTTAAAGATTAATTAAAAAA
TATATGGACACACGTTCTAAAATTAAAAACCAAGATGAAATAAATATTTA
CATTAGTCCCTCCCCCTTTTGACCATAGATAGATAGATAGATAGATAGAT
AGATAGATATGCCCTCCGATGTATCGGAATGGGTCCTA

Coding sequence (CDS) from alignment at scaffold_451:158236..162223-

>TCONS_00066213 ID=TCONS_00066213|Name=TCONS_00066213|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_451:158236..162223- (Clytia hemisphaerica)
GCTTACGTAATGACCGTATCTCAAGAATCTTACGTCGTGACGAAGACGAA
CTTGAAAATGCGCCGTCAAAGCGTCGTGACTTGCCGGCACGTTACGCTTG
TTCAATCACTGGAGATTGCCATAAAACATAAAATGCCAAGATATAGCGCC
GTCGGAGCTTTGTCATGATTGTATCAGATATTCGCACGTGTGCCGGAGAT
CATGTCACGTGTGCTCAGCTCACGACGAAGAAACAAACGGAGCAGAAGAA
AACAGATTGGATATTTTCCGCAGAGAGATTCTCAAACATGAATTTATTTT
TGGTGATCAGTTTGCTTTTTGGATATTGTTTTATCTCAGTAAATTGCTTA
TCATTGGCTAGCATTGCAGGCTTACGTAATGACCGTATCTCAAGAATCTT
ACGTCGTGACGAAGACGAACTTGAAAATGCGCCGTCAAAGCGTCGTGACT
TGCCGGCACGTTACGCTTGTTCAATCACTGGAGATTGCCATAAAACATAA
AATGCCAAGATATAGCGCCGTCGGAGCTTTGTCATGATTGTATCAGATAT
TCGCACGTGTGCCGGAGATCATGTCACGTGTGCTCAGCTCACGACGAAGA
AACAAACGGAGCAGAAGAAAACAGATTGGATATTTTCCGCAGAGAGATTC
TCAAACATGAATTTATTTTTGGTGATCAGTTTGCTTTTTGGATATTGTTT
TATCTCAGTAAATTGCTTATCATTGGCTAGCATTGCAGGCTTACGTAATG
ACCGTATCTCAAGAATCTTACGTCGTGACGAAGACGAACTTGAAAATGCG
CCGTCAAAGCGTCGTGACTTGCCGGCACGTTACGCTTGTTCAATCACTGG
AGATTGCCATAAAACATAAAATGCCAAGATATAGCGCCGTCGGAGCTTTG
TCATGATTGTATCAGATATTCGCACGTGTGCCGGAGATCATGTCACGTGT
GCTCAGCTCACGACGAAGAAACAAACGGAGCAGAAGAAAACAGATTGGAT
ATTTTCCGCAGAGAGATTCTCAAACATGAATTTATTTTTGGTGATCAGTT
TGCTTTTTGGATATTGTTTTATCTCAGTAAATTGCTTATCATTGGCTAGC
ATTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041435XLOC_041435Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066213-proteinTCONS_00066213-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066213-exon-scaffold_451-1575043694:161934..162223TCONS_00066213-exon-scaffold_451-1575043694:161934..162223Clytia hemisphaericaexon
TCONS_00066213-exon-scaffold_451-1575043694:161271..161426TCONS_00066213-exon-scaffold_451-1575043694:161271..161426Clytia hemisphaericaexon
TCONS_00066213-exon-scaffold_451-1575043694:158236..160094TCONS_00066213-exon-scaffold_451-1575043694:158236..160094Clytia hemisphaericaexon
TCONS_00066213-exon-scaffold_451-1510915933:161934..162223TCONS_00066213-exon-scaffold_451-1510915933:161934..162223Clytia hemisphaericaexon
TCONS_00066213-exon-scaffold_451-1510915933:161271..161426TCONS_00066213-exon-scaffold_451-1510915933:161271..161426Clytia hemisphaericaexon
TCONS_00066213-exon-scaffold_451-1510915933:158236..160094TCONS_00066213-exon-scaffold_451-1510915933:158236..160094Clytia hemisphaericaexon
TCONS_00066213-exon-scaffold_451-1491911889:161934..162223TCONS_00066213-exon-scaffold_451-1491911889:161934..162223Clytia hemisphaericaexon
TCONS_00066213-exon-scaffold_451-1491911889:161271..161426TCONS_00066213-exon-scaffold_451-1491911889:161271..161426Clytia hemisphaericaexon
TCONS_00066213-exon-scaffold_451-1491911889:158236..160094TCONS_00066213-exon-scaffold_451-1491911889:158236..160094Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:158236..162223 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.246592	0.106608	0.428074	0.478618	0.849559	0.533904	0.663074	1.07676	0.653567	0.654922	0.62379	0.508978	0.831894	0.968496	0.546001	0.864294	1.50454	2.33503	1.05454	0.712473	5.98733	6.19544	4.65263	7.18063	8.68426	8.98285	1.1859	1.23466	0.502604	0.527888
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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