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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066216 ID=TCONS_00066216|Name=TCONS_00066216|organism=Clytia hemisphaerica|type=transcript|length=977bp
CTCAAAGTGTTGGTAACTTTGTCTTGAAAAATGGTGCCATCATACAAGAA
CCTGCATCAATGTCCAATGGTGAACCCAGCCAAACAAGTTCAGCTCAAAA
TGTCATAGCATCAACAGAATCAATCACAAGCTCCATCACAGAATCATCTA
TTTCAATGTTCGATTATGGAATATTCGATGTCTCCAACTCCACCACCATC
TCTGGTGATATTCAACCATCATCAAGTGTTGAATCACCAACTGTTTCTAG
CTCTTCAATAACGACAACTACAGAAACACCAATCCAGGAAGACGAATCAT
TCACCCTATGTAAACACTATAAGACCATAGTGGATGATACGAGAGTCGCT
CTTGGTAAATCATTGAGCAGCATAATGTGTGATCTGAATTATTATTCAGC
TGTGCGGTTTGTGACAACAGAGGGTTACAGTTTGAAGTTGACTGAAGGAT
GCAGCTTAACTGACCAGTTTAATAGGACTTGCTCAGGATTTTCCAGCAAT
GTATGGTTAGACGGTCAACATCCACAAAAATTTGGTTCTCAAGATCGACG
TGTTTGCATCAACTCCTCTCCAAACGATGTATCAAAGTATTGTCAATGTG
AGAGACGGGAAGTTTTGTTTCTTGAAAAATGCAGTGAAGATGGACATTCA
TTTTATGTATATCGACTTTCACCATTATTTAAGTTGACAAACTCCAGTTT
AGATTCAAAGATGTGTAATTTCAGATACTGTGCAGATGTGCAGCCTGGTG
GTAAAACGACTCAACCAACACTAAAACCAGTCCCAAAAGAGAAAGaGGTT
TTTTCTACCCGTGGTACATTCACTATTACTGACCCAAAGCTCAACGACGA
CACATTGACTGAAGGTGACATCAAAGATAAAGAATCGAAAACGTATTCTT
TCCTCTTGAAAGCAGTGACAGATAAGaTGTCATCAACACTCGCCAAAGTT
AAAGGTGTATCACGCTTTGAAGTTATA Run BLAST on NCBI protein sequence of TCONS_00066216-protein >TCONS_00066216-protein ID=TCONS_00066216-protein|Name=TCONS_00066216-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
QSVGNFVLKNGAIIQEPASMSNGEPSQTSSAQNVIASTESITSSITESSI
SMFDYGIFDVSNSTTISGDIQPSSSVESPTVSSSSITTTTETPIQEDESF
TLCKHYKTIVDDTRVALGKSLSSIMCDLNYYSAVRFVTTEGYSLKLTEGC
SLTDQFNRTCSGFSSNVWLDGQHPQKFGSQDRRVCINSSPNDVSKYCQCE
RREVLFLEKCSEDGHSFYVYRLSPLFKLTNSSLDSKMCNFRYCADVQPGG
KTTQPTLKPVPKEKEVFSTRGTFTITDPKLNDDTLTEGDIKDKESKTYSF
LLKAVTDKMSSTLAKVKGVSRFEVI Run BLAST on NCBI transcript from alignment at scaffold_451:220465..222863- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066216 ID=TCONS_00066216|Name=TCONS_00066216|organism=Clytia hemisphaerica|type=transcript|length=2399bp|location=Sequence derived from alignment at scaffold_451:220465..222863- (Clytia hemisphaerica)
CTCAAAGTGTTGGTAACTTTGTCTTGAAAAATGGTGCCATCATACAAGAA
CCTGCATCAATGTCCAATGGTGAACCCAGCCAAACAAGTTCAGCTCAAAA
TGTCATAGCATCAACAGAATCAATCACAAGCTCCATCACAGAATCATCTA
TTTCAATGTTCGATTATGGAATATTCGATGTCTCCAACTCCACCACCATC
TCTGGTGATATTCAACCATCATCAAGTGTTGAATCACCAACTGTTTCTAG
CTCTTCAATAACGACAACTACAGAAACACCAATCCAGGAAGACGAATCAT
TCACCCTATGTAAACACTATAAGACCATAGTGGATGATACGAGAGTCGCT
CTTGGTAAATCATTGAGCAGCATAATGTGTGATCTGAATTATTATTCAGC
TGTGCGGTTTGTGACAACAGAGGGTTACAGTTTGAAGTTGACTGAAGGAT
GCAGCTTAACTGACCAGTTTAATAGGTATGCAAAAATTTTAATTCAATAT
TTCAGCAAGCTCGAATATCATCTGCTGCTTAAAGAAGCTTATTCAAAAAA
ACAATAGTGTAGAAAACAATAGAAAAAATTCAATACTCTGACTCGCACAA
TAATTGATTTCGATACTTTTTCCCTAATCAGACCCGGCAGAACAACCGTC
AAGTTGGGGAGACTGAAGGCTTGAAATAAGAATATTTGAAAAAAAAAATC
TCATTTTCTCAAAAGTGGAGAGGTCTTCCCATTCTCTCCGCTTCCGCTGG
GTTTGCTAATAGCTTTCAATGATATTCCTTTTTGTCAATTTTCCAAAAAG
CTAAAGCAAAAAAATAAACTTTCATCAAAGGGGGTCATATAATTTCCATG
TGCTTGCATATTTTGCCACTAATTGCTATTATGGTTTTTATTTTTATGCA
GGACTTGCTCAGGATTTTCCAGCAATGTATGGTTAGACGGTCAACATCCA
CAAAAATTTGGTTCTCAAGATCGACGTGTTTGCATCAACTCCTCTCCAAA
CGATGTATCAAAGTATTGTCAATGTGAGAGACGGGAAGTTTTGTTTCTTG
AAAAATGCAGTGAAGATGGACATTCATTTTATGTATATCGACTTTCACCA
TTATTTAAGTTGACAAACTCCAGTTTAGATTCAAAGATGTGTAATTTCAG
ATACTGTGCAGATGTGCAGCCTGGTGGTAAAACGACTCAACCAACACTAA
AACCAGTCCCAAAAGAGAAAGGTATCAATTGTTTATGAATGAATTTTAAC
CATACCAAAACTTAAGAATGTACTGCTACAATTCAAATTTACCGCTTGCA
ATATAAGTCTAGTAAGTCTAATCATTGCAACTTTCTACTTAAAATAAAGC
TTTTGGAGTAGATTTCTGGATATACTCTAAATAGAAATAACAATGTGAAC
ATCATTGTGAATGTGATACAGATATTGTCAGATTCTAGCTCAACTGAAGT
TGAGAACAGCTTCAAACTATCGTGAACCTTTTCATGATAGTTTCAATTGG
TCAAGTAGTCATCATCTAAAAGGTTTTCCAGAACGAAAATGTTAGGTCTT
GAGGGTGAAGAGATTTATATGTGACAGCACTTACTTTAAACCTACCCAGC
TGGCACACAACGTCATTTCAACGTTTATCTAACGTTCACAACGTCCATAT
AACGTTAGATTAACCTTGAAACAACGTTGTGTGCCCGTTGGGTACCATAC
ACGAAAATTATTGGTTCAGGGTATATTCAAGACTTATATTATGTTTTATT
TTCAGAGGTTTTTTCTACCCGTGGTACATTCACTATTACTGACCCAAAGC
TCAACGACGACACATTGACTGAAGGTGACATCAAAGATAAAGAATCGAAA
ACGTATTCTTTCCTCTTGAAAGCAGTGACAGATAAGGTAAAGATAATGGT
AAAATTCATTTCCGCCATGTCTATGGTACAAGAGAAATTTTAAATATCAA
CATTCCAAACTGAACTGAACTGAAATAATCGTCAAAATCATTTGCACTGT
AGAATTCTTTGAGGAACGTTTATTTCACTGAAGATTGGGGCACTACACGG
GTTGAAACTGTCAAAGGGGGGAAATAACGTCTTTTTTTTTTTACTGAGAA
TCTGTAATGATAAGTTTCATCAAGTTATTACTAATCGCTGTCTTCCTTTC
TTCGTTTTATCCCTTCTTTATATATTTTTGTGTGCTGTCCCTAGCAAATT
TCAATTCCTTCACAACTCCAATTTAACTTCATGAATGCATATTTGAACTC
AAAAATTTAAAACCGTGATAAGGGAAGCTAACAGACCTGGATCAAATATG
AACGTCTCTTTGCTCAAAAAATTACAAACAAACATATTTTCATATTAGAT
GTCATCAACACTCGCCAAAGTTAAAGGTGTATCACGCTTTGAAGTTATA Coding sequence (CDS) from alignment at scaffold_451:220465..222863- >TCONS_00066216 ID=TCONS_00066216|Name=TCONS_00066216|organism=Clytia hemisphaerica|type=CDS|length=3900bp|location=Sequence derived from alignment at scaffold_451:220465..222863- (Clytia hemisphaerica)
ATGTCATCAACACTCGCCAAAGTTAAAGGTGTATCACGCTTTGAAGTTAT
AAGGTTTTTTCTACCCGTGGTACATTCACTATTACTGACCCAAAGCTCAA
CGACGACACATTGACTGAAGGTGACATCAAAGATAAAGAATCGAAAACGT
ATTCTTTCCTCTTGAAAGCAGTGACAGATAAGGACTTGCTCAGGATTTTC
CAGCAATGTATGGTTAGACGGTCAACATCCACAAAAATTTGGTTCTCAAG
ATCGACGTGTTTGCATCAACTCCTCTCCAAACGATGTATCAAAGTATTGT
CAATGTGAGAGACGGGAAGTTTTGTTTCTTGAAAAATGCAGTGAAGATGG
ACATTCATTTTATGTATATCGACTTTCACCATTATTTAAGTTGACAAACT
CCAGTTTAGATTCAAAGATGTGTAATTTCAGATACTGTGCAGATGTGCAG
CCTGGTGGTAAAACGACTCAACCAACACTAAAACCAGTCCCAAAAGAGAA
AGCAAAGTGTTGGTAACTTTGTCTTGAAAAATGGTGCCATCATACAAGAA
CCTGCATCAATGTCCAATGGTGAACCCAGCCAAACAAGTTCAGCTCAAAA
TGTCATAGCATCAACAGAATCAATCACAAGCTCCATCACAGAATCATCTA
TTTCAATGTTCGATTATGGAATATTCGATGTCTCCAACTCCACCACCATC
TCTGGTGATATTCAACCATCATCAAGTGTTGAATCACCAACTGTTTCTAG
CTCTTCAATAACGACAACTACAGAAACACCAATCCAGGAAGACGAATCAT
TCACCCTATGTAAACACTATAAGACCATAGTGGATGATACGAGAGTCGCT
CTTGGTAAATCATTGAGCAGCATAATGTGTGATCTGAATTATTATTCAGC
TGTGCGGTTTGTGACAACAGAGGGTTACAGTTTGAAGTTGACTGAAGGAT
GCAGCTTAACTGACCAGTTTAATAGATGTCATCAACACTCGCCAAAGTTA
AAGGTGTATCACGCTTTGAAGTTATAAGGTTTTTTCTACCCGTGGTACAT
TCACTATTACTGACCCAAAGCTCAACGACGACACATTGACTGAAGGTGAC
ATCAAAGATAAAGAATCGAAAACGTATTCTTTCCTCTTGAAAGCAGTGAC
AGATAAGGACTTGCTCAGGATTTTCCAGCAATGTATGGTTAGACGGTCAA
CATCCACAAAAATTTGGTTCTCAAGATCGACGTGTTTGCATCAACTCCTC
TCCAAACGATGTATCAAAGTATTGTCAATGTGAGAGACGGGAAGTTTTGT
TTCTTGAAAAATGCAGTGAAGATGGACATTCATTTTATGTATATCGACTT
TCACCATTATTTAAGTTGACAAACTCCAGTTTAGATTCAAAGATGTGTAA
TTTCAGATACTGTGCAGATGTGCAGCCTGGTGGTAAAACGACTCAACCAA
CACTAAAACCAGTCCCAAAAGAGAAAGCAAAGTGTTGGTAACTTTGTCTT
GAAAAATGGTGCCATCATACAAGAACCTGCATCAATGTCCAATGGTGAAC
CCAGCCAAACAAGTTCAGCTCAAAATGTCATAGCATCAACAGAATCAATC
ACAAGCTCCATCACAGAATCATCTATTTCAATGTTCGATTATGGAATATT
CGATGTCTCCAACTCCACCACCATCTCTGGTGATATTCAACCATCATCAA
GTGTTGAATCACCAACTGTTTCTAGCTCTTCAATAACGACAACTACAGAA
ACACCAATCCAGGAAGACGAATCATTCACCCTATGTAAACACTATAAGAC
CATAGTGGATGATACGAGAGTCGCTCTTGGTAAATCATTGAGCAGCATAA
TGTGTGATCTGAATTATTATTCAGCTGTGCGGTTTGTGACAACAGAGGGT
TACAGTTTGAAGTTGACTGAAGGATGCAGCTTAACTGACCAGTTTAATAG
ATGTCATCAACACTCGCCAAAGTTAAAGGTGTATCACGCTTTGAAGTTAT
AAGGTTTTTTCTACCCGTGGTACATTCACTATTACTGACCCAAAGCTCAA
CGACGACACATTGACTGAAGGTGACATCAAAGATAAAGAATCGAAAACGT
ATTCTTTCCTCTTGAAAGCAGTGACAGATAAGGACTTGCTCAGGATTTTC
CAGCAATGTATGGTTAGACGGTCAACATCCACAAAAATTTGGTTCTCAAG
ATCGACGTGTTTGCATCAACTCCTCTCCAAACGATGTATCAAAGTATTGT
CAATGTGAGAGACGGGAAGTTTTGTTTCTTGAAAAATGCAGTGAAGATGG
ACATTCATTTTATGTATATCGACTTTCACCATTATTTAAGTTGACAAACT
CCAGTTTAGATTCAAAGATGTGTAATTTCAGATACTGTGCAGATGTGCAG
CCTGGTGGTAAAACGACTCAACCAACACTAAAACCAGTCCCAAAAGAGAA
AGCAAAGTGTTGGTAACTTTGTCTTGAAAAATGGTGCCATCATACAAGAA
CCTGCATCAATGTCCAATGGTGAACCCAGCCAAACAAGTTCAGCTCAAAA
TGTCATAGCATCAACAGAATCAATCACAAGCTCCATCACAGAATCATCTA
TTTCAATGTTCGATTATGGAATATTCGATGTCTCCAACTCCACCACCATC
TCTGGTGATATTCAACCATCATCAAGTGTTGAATCACCAACTGTTTCTAG
CTCTTCAATAACGACAACTACAGAAACACCAATCCAGGAAGACGAATCAT
TCACCCTATGTAAACACTATAAGACCATAGTGGATGATACGAGAGTCGCT
CTTGGTAAATCATTGAGCAGCATAATGTGTGATCTGAATTATTATTCAGC
TGTGCGGTTTGTGACAACAGAGGGTTACAGTTTGAAGTTGACTGAAGGAT
GCAGCTTAACTGACCAGTTTAATAGATGTCATCAACACTCGCCAAAGTTA
AAGGTGTATCACGCTTTGAAGTTATAAGGTTTTTTCTACCCGTGGTACAT
TCACTATTACTGACCCAAAGCTCAACGACGACACATTGACTGAAGGTGAC
ATCAAAGATAAAGAATCGAAAACGTATTCTTTCCTCTTGAAAGCAGTGAC
AGATAAGGACTTGCTCAGGATTTTCCAGCAATGTATGGTTAGACGGTCAA
CATCCACAAAAATTTGGTTCTCAAGATCGACGTGTTTGCATCAACTCCTC
TCCAAACGATGTATCAAAGTATTGTCAATGTGAGAGACGGGAAGTTTTGT
TTCTTGAAAAATGCAGTGAAGATGGACATTCATTTTATGTATATCGACTT
TCACCATTATTTAAGTTGACAAACTCCAGTTTAGATTCAAAGATGTGTAA
TTTCAGATACTGTGCAGATGTGCAGCCTGGTGGTAAAACGACTCAACCAA
CACTAAAACCAGTCCCAAAAGAGAAAGCAAAGTGTTGGTAACTTTGTCTT
GAAAAATGGTGCCATCATACAAGAACCTGCATCAATGTCCAATGGTGAAC
CCAGCCAAACAAGTTCAGCTCAAAATGTCATAGCATCAACAGAATCAATC
ACAAGCTCCATCACAGAATCATCTATTTCAATGTTCGATTATGGAATATT
CGATGTCTCCAACTCCACCACCATCTCTGGTGATATTCAACCATCATCAA
GTGTTGAATCACCAACTGTTTCTAGCTCTTCAATAACGACAACTACAGAA
ACACCAATCCAGGAAGACGAATCATTCACCCTATGTAAACACTATAAGAC
CATAGTGGATGATACGAGAGTCGCTCTTGGTAAATCATTGAGCAGCATAA
TGTGTGATCTGAATTATTATTCAGCTGTGCGGTTTGTGACAACAGAGGGT
TACAGTTTGAAGTTGACTGAAGGATGCAGCTTAACTGACCAGTTTAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00066216-exon-scaffold_451-1575043694:222389..222863 | TCONS_00066216-exon-scaffold_451-1575043694:222389..222863 | Clytia hemisphaerica | exon |
| TCONS_00066216-exon-scaffold_451-1575043694:221643..221962 | TCONS_00066216-exon-scaffold_451-1575043694:221643..221962 | Clytia hemisphaerica | exon |
| TCONS_00066216-exon-scaffold_451-1575043694:220978..221108 | TCONS_00066216-exon-scaffold_451-1575043694:220978..221108 | Clytia hemisphaerica | exon |
| TCONS_00066216-exon-scaffold_451-1575043694:220465..220515 | TCONS_00066216-exon-scaffold_451-1575043694:220465..220515 | Clytia hemisphaerica | exon |
| TCONS_00066216-exon-scaffold_451-1510915933:222389..222863 | TCONS_00066216-exon-scaffold_451-1510915933:222389..222863 | Clytia hemisphaerica | exon |
| TCONS_00066216-exon-scaffold_451-1510915933:221643..221962 | TCONS_00066216-exon-scaffold_451-1510915933:221643..221962 | Clytia hemisphaerica | exon |
| TCONS_00066216-exon-scaffold_451-1510915933:220978..221108 | TCONS_00066216-exon-scaffold_451-1510915933:220978..221108 | Clytia hemisphaerica | exon |
| TCONS_00066216-exon-scaffold_451-1510915933:220465..220515 | TCONS_00066216-exon-scaffold_451-1510915933:220465..220515 | Clytia hemisphaerica | exon |
| TCONS_00066216-exon-scaffold_451-1491911889:222389..222863 | TCONS_00066216-exon-scaffold_451-1491911889:222389..222863 | Clytia hemisphaerica | exon |
| TCONS_00066216-exon-scaffold_451-1491911889:221643..221962 | TCONS_00066216-exon-scaffold_451-1491911889:221643..221962 | Clytia hemisphaerica | exon |
| TCONS_00066216-exon-scaffold_451-1491911889:220978..221108 | TCONS_00066216-exon-scaffold_451-1491911889:220978..221108 | Clytia hemisphaerica | exon |
| TCONS_00066216-exon-scaffold_451-1491911889:220465..220515 | TCONS_00066216-exon-scaffold_451-1491911889:220465..220515 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:220465..222863 - |
Blast
The following BLAST results are available for this feature:
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