TCONS_00066217 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066217
Unique NameTCONS_00066217
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066217 ID=TCONS_00066217|Name=TCONS_00066217|organism=Clytia hemisphaerica|type=transcript|length=339bp
AGGATTTCGAGGAAAATAAATGGATCAGATTTCAATCCACCGAAGGGAAA
GACGTACAATTAGCTGAAAATTGTCCAAGTAAAGTTTCGAATCTCGAGAT
GTTGATCAATAACACATTCTGTGATGCAAAATATAGAGGATGGATACAAG
GGGTACATCCAGGACCCAGAGAAGgGCGTGCTTCAATGACTCtgtgtttt
tctgatccttcaACATGTAAATGTCAGTTTTCAAGTGAAATCGTGGTGAC
GAACTGTGGAGACTTCTACGTGTATCGCAGACGAACCAACGATTTTCCTC
ATTGTGATGCTAGGGCATGTACTGTCCTCCATCCTGATG
Run BLAST on NCBI

transcript from alignment at scaffold_451:223824..226258-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066217 ID=TCONS_00066217|Name=TCONS_00066217|organism=Clytia hemisphaerica|type=transcript|length=2435bp|location=Sequence derived from alignment at scaffold_451:223824..226258- (Clytia hemisphaerica)
AGGATTTCGAGGAAAATAAATGGATCAGGTATTGAAATTTGAGCTTTTCA
TAAACTTGTTTATATAAGTATGTACCCAAATGGCACACAACGTTGTTTCA
ACATTTATCTAACGTTCACAACGTCCATATACAGTGCCGTAGCAACTGGG
GGTGCAAGGAGGGGCTATGCCCCCCCCCACCCAATAATTTTTTCAAAAAT
GGATATTTTGTAAAATGCAAAGGTTTTCTTTTTTAATTTGTCATAATTGT
CTTTATGTGCATGTTTTGAGTGTATTAGTTTTAAGCAATCTAGAGCTCAA
ATTTTCAAAATTTCCCCCTCAGGCCAAACCAGTTGGCCCTCGCGGTGTCA
CTAAACTTCAGCCCCCCAATATGAAAATGCTTCCTACGGCACTGATATAA
CGTTAGATGATAGTTGAAACAACGTTGTGTGCCAAATGGGTATATTCATA
TTCTTCAAATGGTGTCTGTTAGTGGAGTCGGCAGTGAGGAAGTTAACCCC
CTTTTCTATTTGCGCTAAACCTGGGAGATCGAATGCTAAGGTGGAGCGCC
ACACCTAGTCTCAGCTCCCAGTAACTTACCACCTAGATCAGAGTACTCAA
TCTAAGCTACTCATTTGCTGAGTTGGCGGTGATCAGGGATCAAACCCACA
ACAGACAGATAAAACTTATTAATTGATATAAAGCATACACCCACTGGGAC
TCCTTTCTACTGAAAAAATTGACCCAAATATTGTCCACGGTGGAAAATTT
TTCTCCAATTTTTTTTCCTACTGACAATAATCAAATAAACCAATCCTCAC
TGCAAGATATATGCTACTTTTTCCATCCCCACTGAATTTTCTGACTTGAA
AACAAAAGAATTGAAATCCCTAGTCAAAAAAAAAATGGGAATATCAATCC
GTCAAGTTTTAGGACCTTATGTCCATCCTCAGTGGCTGAAAATATCCTTC
CGGGTCTGTGAAAGGGGGTGCAAGAATGACGTTGACTTTTAGTGCATACA
CGTTTGTTTTTTTAAGAAACTAGTTTTACCAAGCAGCCTCAATGTTTCTT
AAGAAATGGGCATTTTGAGCCTTAAATGTTTCTTACATGTTTCTAAACTT
TTTAACATATTCAGCCTTATGGAAGGCTGGGTTGGAAGGTTCTTAAAACA
ACGAATTAAAAAATGTTATTTTCTCATTCTCAGCCTCTGCATGTTTCTTA
GATGTTTCTTAGTTTTTAGGCATTCTGAGCCTCGTGTTTCTTAAAAGTGT
GTTTCTTAAAAAAAAAACGTGTAATTACGGTGTAGTAACAAGATACGCAT
ACTGCATTGAGCTAAAAAGAAGCAGTTTTGACACAACGAGGAATTGAACA
TTTTCTTTTTCCTTTGGCTTTAGATTTCAATCCACCGAAGGGAAAGACGT
ACAATTAGCTGAAAATTGTCCAAGTAAAGTTTCGAATCTCGAGATGTTGA
TCAATAACACATTCTGTGATGCAAAATATAGAGGATGGATACAAGGGGTA
CATCCAGGACCCAGAGAAGGTGAGTATCCATTGTTTGGTCATAACGACTT
TTGATAAATTCTCATACATGATTATTGCAAAAGACTTTCAGCTCAAATCG
TTGTCTTGAGAAATCAATAAATCTATGCAAATTTGACAATGATTCTAAGC
GAAAGTATTGGTAAAATCTCAATTACAGATTAACCGTATTACTTGGAATA
AACGCCCCTTCTTTTAGGAAAAATTTTCACTGAACGCCTCCTTCCCTTTA
AATAAACGCCCCCTTTGAATAAAAGGCTCCTCCAAGGAAGGGTGTTTATT
TGAAACAGGCAGCAATAAGAAGTTTAACACGAAGAAAAACTTTGATATAC
AACAATGATTGTGTTCTTTTTGTATTCGAGCTGGTTTTGACCCGTTTCTA
TATCCCTAAACTAACATATTTGTACTCAAATGATAAAATAAAAGGCGCAA
ATAAGATTCCAATTCGCGTTACCAAAGTGAGCACGTTCATAAATTAATTA
ATGAACGCCCCCCTTCGTTTAAACGCCCCTCGAATAAACACTCTTCCTAA
AATCCAAAAATTTCAATGAACACCCGGGGCGCTTATTCGAAGTAATACAG
TATTGTAATATCTGTGAGCTCATTATGTTAAAAACGTTTCAAATGAAAAA
AAAAAAATTTTCCCAGCTGGCACACAACGTTGCTTCAACGTTTATGTAAC
GTTCACAATGTCCATACGAAACAACGTCGTGTGCTAGCTGGGTTAGAACA
ATGTTTTTGTTGATTTTCAGGGCGTGCTTCAATGACTCTGTGTTTTTCTG
ATCCTTCAACATGTAAATGTCAGTTTTCAAGTGAAATCGTGGTGACGAAC
TGTGGAGACTTCTACGTGTATCGCAGACGAACCAACGATTTTCCTCATTG
TGATGCTAGGGCATGTACTGTCCTCCATCCTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041439XLOC_041439Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066217-exon-scaffold_451-1575043694:226231..226258TCONS_00066217-exon-scaffold_451-1575043694:226231..226258Clytia hemisphaericaexon
TCONS_00066217-exon-scaffold_451-1575043694:224740..224885TCONS_00066217-exon-scaffold_451-1575043694:224740..224885Clytia hemisphaericaexon
TCONS_00066217-exon-scaffold_451-1575043694:223824..223988TCONS_00066217-exon-scaffold_451-1575043694:223824..223988Clytia hemisphaericaexon
TCONS_00066217-exon-scaffold_451-1510915933:226231..226258TCONS_00066217-exon-scaffold_451-1510915933:226231..226258Clytia hemisphaericaexon
TCONS_00066217-exon-scaffold_451-1510915933:224740..224885TCONS_00066217-exon-scaffold_451-1510915933:224740..224885Clytia hemisphaericaexon
TCONS_00066217-exon-scaffold_451-1510915933:223824..223988TCONS_00066217-exon-scaffold_451-1510915933:223824..223988Clytia hemisphaericaexon
TCONS_00066217-exon-scaffold_451-1491911889:226231..226258TCONS_00066217-exon-scaffold_451-1491911889:226231..226258Clytia hemisphaericaexon
TCONS_00066217-exon-scaffold_451-1491911889:224740..224885TCONS_00066217-exon-scaffold_451-1491911889:224740..224885Clytia hemisphaericaexon
TCONS_00066217-exon-scaffold_451-1491911889:223824..223988TCONS_00066217-exon-scaffold_451-1491911889:223824..223988Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:223824..226258 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.577512	0	1.93541	0	6.32317	9.33991	9.64582	11.2697	2.12273	2.51998	0	0.345093	0	0	0	0	0	0	3.32761	3.1238	0.879174	0.444876
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066217 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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