|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066223 ID=TCONS_00066223|Name=TCONS_00066223|organism=Clytia hemisphaerica|type=transcript|length=790bp CAAGATAACTCTACTTTAAGGACAAGGAATTTATCCATATGGGAAGGACA CGCAATCAGAATCATCTTTAActtcaatgatgctggtcaaccTAATCAAT GTCTCTTCATTAAAGTCCCTGGAACACTTGTTTACCCAGCAGTAATTACA GATATTGACGCATCGAAAGCCAGCGACGTTTTCGTACCTCCCTCCGTCTT CATTCAGCCATCCTCATCATCGGCCACGTATTTCGATTTAACCACGACTA CGACAAGTATTACCAGTGACGTTTTCGTACCTCCCTCTGTCTTCATTCAA CCGTCATCATCACCAGTCACGTCTTTTGATTCAACCACGACTACGACAAG TATTACTGACTCATTTATTCAACAAGCATCTACAACGACGGGTCTTGATA GTTATACGGGATACGTTCCTACGACAAATGTTCAACCTACGGCATCATCG AAGGACACTTCAACATCTTCAATCACTACACCAAAAGTCCCAACGACCCC ACCAAAAACAACTCCTTCACAAAAACCGTCAGTCGTTACACCAAAGCTCC CAGCGACCCCACCAAAAACAACTCCTTCACAAGAACCACCAATCACCTCG GCACCAAACACTCCAACTCAACCGATCACAATCATACCAACAACTTCGTT CCGTAATACAACCAGTCCGACAGAAGAACCACCCGTAGTGAATAATGCAC CGGTTATCGCAGGAGTCACGACTTCGTTAGCTTTCTTGTTGGTATTTTCG GCAGCTCTCTTCTACGTTCTGAGAAAAAATCCTTCCAGAC Run BLAST on NCBI protein sequence of TCONS_00066223-protein >TCONS_00066223-protein ID=TCONS_00066223-protein|Name=TCONS_00066223-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
QDNSTLRTRNLSIWEGHAIRIIFNFNDAGQPNQCLFIKVPGTLVYPAVIT DIDASKASDVFVPPSVFIQPSSSSATYFDLTTTTTSITSDVFVPPSVFIQ PSSSPVTSFDSTTTTTSITDSFIQQASTTTGLDSYTGYVPTTNVQPTASS KDTSTSSITTPKVPTTPPKTTPSQKPSVVTPKLPATPPKTTPSQEPPITS APNTPTQPITIIPTTSFRNTTSPTEEPPVVNNAPVIAGVTTSLAFLLVFS AALFYVLRKNPSR Run BLAST on NCBI transcript from alignment at scaffold_451:301647..305614- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066223 ID=TCONS_00066223|Name=TCONS_00066223|organism=Clytia hemisphaerica|type=transcript|length=3968bp|location=Sequence derived from alignment at scaffold_451:301647..305614- (Clytia hemisphaerica) CAAGATAACTCTACTTTAGTAAGTATTTTATACCAGTATCTTATTTTATA
ATAGTCAGTACTTACAGTTTCACCGTGCTAACCAAATTTGACCTGTATTA
GATTAATTTTTCTTCAAAACGAAATTTCAATATTTTACAAAAACAATTCC
TAGTAATTAGTGTTGCGAATATTTCCAAGGAGATACTGACCTTTCAGCCT
GAAAAATGATCTGCCTTCCCCATCGGGGAATGGGTCCTACTCCTTGCGAA
GTAAGAATTCCTCCTTTTTCGTTTTACGTTTAGCGCTGTCTAGACACCAC
TGGTTCTGTACACACGAGACATAGATACCATAATGCATAGTGATGACACT
CGAACTACGCGGGACAGCATATAGCTCGTCGCTGGCGTAAAACCTCAGCC
TGAAAAATATAAACAGCTATTTGTAAAACCCACAGGAAAAAGTATGGAAA
TCACATGCTTGGTAAAACTGATTTCTGTGCATGTGATTCTGAAAAAAATC
ACAAGCGTGTGAAAATTCAAATCACAAGCCATCTTTTCTCGACTTAAATG
GGGTGTCTGACTAGATCTAAAATCAAAAATAGGATTTTTTGTCTTTCTCA
GAGAGAGAGGTTTAATACCCTAAAAGTAACTCACTTCTATTCTATTTAAC
AAGTGAGAAAAGATGGATTGTGAATTACATTTTCACACGCTTGTGATTTT
TTGCAGGATCACATGCTCGGAAATTGTACCCTGAGTATCAGAGGTTAAGT
TTTCAAAGAAAATAGTAACCTCTGAAGACAAATAATAAAAACTTTATCGC
GCATGTGTCAATTTAATCACTGTAGAAAAAATCAAAGATGAAGAGCAAAT
ATTACCATATTAATGTCTAGCAGACTGTATCAGTATGTAGTTTACTATTT
ACGAATTCCCCAGAAACCTCCAAGTGTAGTTGAAATGAGTTTAGTTCGAA
AGAAATATTTTACATGATCCCCAAATGTATAACTGCGTAATTACTAAACT
TTTAATTATGGAAATGTCACTTTAATTGAATCGAAATAATATAGACAGAC
TTTATGTTATGATTCTCTATCACTGACTCTTTTTACAAAGCATTGATGAC
TTTTTGTAAGCTGTGTTTTCAACGACGGGAATAAAAATATCGACTATGAC
GCTCATCCAAGATCTTGGATGGTCGTCATGGTCACTTTTGTCTTCGCTGA
TTGCGCGATGAATAGAATCTCGATTCGTCGGCACAGCGTAAATATATGAT
TTTGAGCTGTGCTTTTCACGGTACGGAAATTGGTTTTCACACGCTTGTGG
TTCACGGATTTTTTCCTGTGACCTAGTATGGCAAAACAATCAAAACAAAT
CAAAAATGCTCAAGTTTGCTTTCACCTATTACGCGAACTATTTGCTCATC
TTTTTCAGAGGACAAGGAATTTATCCATATGGGAAGGACACGCAATCAGA
ATCATCTTTAACTTCAATGATGCTGGTCAACCTAATCAATGTCTCTTCAT
TAAAGTCCCTGGAACACTTGTTTGTGAGTTTCTAGGCTTATTCTTTGTTT
CCATTTTTAAAACTTTATAATGTTAATTTCTCGGAGAATGATCTTTTTGT
TTTCGAATGAACAATTAAAAATCCACATTTTCTAGATAGCAATTTTCTTG
GTACACGTTTTATGTACTATATTTTACTCTAAAATCTGTAATTGCACAAA
ACTTCTATAGCAATAATTAAACTGCCCCAAACCAAAAGAAAGTAGTCAAA
CTCAAGTTTGATGATAGCTCCCCGCTTCGATGGTCATCTTGAATTTGAGC
AGAGTGGAGTTATGCTCTAAGCTAAGCTAAGCTATATATACCTCACCTAT
TATAGCTAAGCACTCGCCAGCTATAATAGGTTGTTCGCCGAAATTCAGGG
ACAAGTGGCATTTTCTGGGAAAGAGGGGTATTAAGAGGAAGAGCTGAAGC
CTATGACTTTATAAATTTGATTGTAATATGCAAAGAGCAAAACTCATGAT
TTAGTAGCTCGTTTTCAGACCCAGCAGTAATTACAGATATTGACGCATCG
AAAGCCAGCGACGTTTTCGTACCTCCCTCCGTCTTCATTCAGCCATCCTC
ATCATCGGCCACGTATTTCGATTTAACCACGACTACGACAAGTATTACCA
GTGACGTTTTCGTACCTCCCTCTGTCTTCATTCAACCGTCATCATCACCA
GTCACGTCTTTTGATTCAACCACGACTACGACAAGTATTACTGACTCATT
TATTCAACAAGCATCTACAACGACGGGTCTTGATAGTTATACGGGATACG
TTCCTACGACAAATGTTCAACCTACGGCATCATCGAAGGTGGGATATCTT
AAAAACTTCTGAAATAATCAATACCTAAATAAATATTTTATGTTTGTCTT
TTGAAAGATCATTTCAAGAACTTGACTTAGAAATACCTAGCTAGAGAGCT
GTTACCTTGCTATAGTATCTCAAAGTTATTGAGCTAGGAAAACGTCAATG
GACTTTTAAGCGACCGTAGCATGAAGGTAGAGCATCCAGCTACGGCACGC
AAGGCTGTGGGTTCGATCTTCAGCCGGGTCATACCAAAGATTCTCAAAAT
GGTACTTGGTGCCTCTCTGCTTGATGCTCAGCAAATAAAGAGACGAATCA
AGGGTAAGTGGAGAAATCCAGGTATAGGAGCGGCGCCCTCCCCTAGCTTT
GGGTAGACAGCTATACGAAAAGGGAGCCTTCGGGTCGCCCTGGACTGCAG
TCGCAAAATTACTTTACTTACTTCAAGGACTTTAGGCTCTAGAGATACAG
AACCGAACCGATCTTTATATTCTGATTAGAAAGTGTCATTAAAATGACAA
AGATTTAAAAAACATTTAAGCTTTAAGAAGAAGAAGAAAAAGAAGAAGAA
GAAGAGGAAGAAGAAGAAGAGCATAACTAGGCAGTAAAGCGACAATCACG
TACCCAGAGCCACTTATACTCTTTTATTTTACTGATACAATATTGTGAGC
ACCTTTTTGATAAAACGAGCTTTATTTTTCATGAATTTTGCCCTTATGTA
TAACAATGAAGTGAGAACAGTCGCTCTCATGCTGTCTTCTGACCAGCCAC
CAGAATCTTTATTTTTGAAATCAATGAATGAGCTATCAAAATGCTTTTTG
TTTTTAGGACACTTCAACATCTTCAATCACTACACCAAAAGTCCCAACGA
CCCCACCAAAAACAACTCCTTCACAAAAACCGTCAGTCGTTACACCAAAG
CTCCCAGCGACCCCACCAAAAACAACTCCTTCACAAGAACCACCAATCAC
CTCGGCACCAAACACTCCAACTCAACCGATCACAATCATACCAACAACTT
CGTTCCGTAATACAACCAGTCCGACAGAAGAACCACCCGTAGTGAATAAT
GCACCGGTTATCGCAGGAGTCACGACTTCGTTAGCTTTCTTGTTGGTATT
TTCGGCAGCTCTCTTCTACGTTCTGAGAAAAAAGTAAGTATCAAGATGTT
ACTGTTATCAAATTAGATACTCGAATATTGATAATACCATGGCTATAAAA
AGTCAGACTTCTCAAAAAGGCTAAATGTTCAGGTGACTCAATTTTGGTCA
ACTCCTCGTAATCCTAATCAAAACCTTTGTTATTTTGTTTCAGATTAAAG
AAGAGACAGACCGGTGAGTAATTTTTTCATTTATACGCATATAAGTCACA
AACTATTTATGGTCTTACACGGATGGATTTCCAAATGGTGCATATCATGT
CTATCTGTTTCTGCTTCATAGTCTTATGTTCCTATCATGTTGTAAAGTGT
TTGTAGCCTTACCCTTCCCACTATCATAGTCCTTTCCAGACGATCTTTTT
TATCGCCTCAAGAAGAAAAAAAACTTTTTATTTTACAAATTGTAGTTTCA
TGCCACATCTTTAGGCAACAAAAAGCTTCATATAATCTATCATTTTATGC
TTCATAGTCCTTCCAGAC Coding sequence (CDS) from alignment at scaffold_451:301647..305614- >TCONS_00066223 ID=TCONS_00066223|Name=TCONS_00066223|organism=Clytia hemisphaerica|type=CDS|length=3945bp|location=Sequence derived from alignment at scaffold_451:301647..305614- (Clytia hemisphaerica) TCCTTCCAGAGACACTTCAACATCTTCAATCACTACACCAAAAGTCCCAA CGACCCCACCAAAAACAACTCCTTCACAAAAACCGTCAGTCGTTACACCA AAGCTCCCAGCGACCCCACCAAAAACAACTCCTTCACAAGAACCACCAAT CACCTCGGCACCAAACACTCCAACTCAACCGATCACAATCATACCAACAA CTTCGTTCCGTAATACAACCAGTCCGACAGAAGAACCACCCGTAGTGAAT AATGCACCGGTTATCGCAGGAGTCACGACTTCGTTAGCTTTCTTGTTGGT ATTTTCGGCAGCTCTCTTCTACGTTCTGAGAAAAAAACCCAGCAGTAATT ACAGATATTGACGCATCGAAAGCCAGCGACGTTTTCGTACCTCCCTCCGT CTTCATTCAGCCATCCTCATCATCGGCCACGTATTTCGATTTAACCACGA CTACGACAAGTATTACCAGTGACGTTTTCGTACCTCCCTCTGTCTTCATT CAACCGTCATCATCACCAGTCACGTCTTTTGATTCAACCACGACTACGAC AAGTATTACTGACTCATTTATTCAACAAGCATCTACAACGACGGGTCTTG ATAGTTATACGGGATACGTTCCTACGACAAATGTTCAACCTACGGCATCA TCGAAGAGGACAAGGAATTTATCCATATGGGAAGGACACGCAATCAGAAT CATCTTTAACTTCAATGATGCTGGTCAACCTAATCAATGTCTCTTCATTA AAGTCCCTGGAACACTTGTTTCAAGATAACTCTACTTTATCCTTCCAGAG ACACTTCAACATCTTCAATCACTACACCAAAAGTCCCAACGACCCCACCA AAAACAACTCCTTCACAAAAACCGTCAGTCGTTACACCAAAGCTCCCAGC GACCCCACCAAAAACAACTCCTTCACAAGAACCACCAATCACCTCGGCAC CAAACACTCCAACTCAACCGATCACAATCATACCAACAACTTCGTTCCGT AATACAACCAGTCCGACAGAAGAACCACCCGTAGTGAATAATGCACCGGT TATCGCAGGAGTCACGACTTCGTTAGCTTTCTTGTTGGTATTTTCGGCAG CTCTCTTCTACGTTCTGAGAAAAAAACCCAGCAGTAATTACAGATATTGA CGCATCGAAAGCCAGCGACGTTTTCGTACCTCCCTCCGTCTTCATTCAGC CATCCTCATCATCGGCCACGTATTTCGATTTAACCACGACTACGACAAGT ATTACCAGTGACGTTTTCGTACCTCCCTCTGTCTTCATTCAACCGTCATC ATCACCAGTCACGTCTTTTGATTCAACCACGACTACGACAAGTATTACTG ACTCATTTATTCAACAAGCATCTACAACGACGGGTCTTGATAGTTATACG GGATACGTTCCTACGACAAATGTTCAACCTACGGCATCATCGAAGAGGAC AAGGAATTTATCCATATGGGAAGGACACGCAATCAGAATCATCTTTAACT TCAATGATGCTGGTCAACCTAATCAATGTCTCTTCATTAAAGTCCCTGGA ACACTTGTTTCAAGATAACTCTACTTTATCCTTCCAGAGACACTTCAACA TCTTCAATCACTACACCAAAAGTCCCAACGACCCCACCAAAAACAACTCC TTCACAAAAACCGTCAGTCGTTACACCAAAGCTCCCAGCGACCCCACCAA AAACAACTCCTTCACAAGAACCACCAATCACCTCGGCACCAAACACTCCA ACTCAACCGATCACAATCATACCAACAACTTCGTTCCGTAATACAACCAG TCCGACAGAAGAACCACCCGTAGTGAATAATGCACCGGTTATCGCAGGAG TCACGACTTCGTTAGCTTTCTTGTTGGTATTTTCGGCAGCTCTCTTCTAC GTTCTGAGAAAAAAACCCAGCAGTAATTACAGATATTGACGCATCGAAAG CCAGCGACGTTTTCGTACCTCCCTCCGTCTTCATTCAGCCATCCTCATCA TCGGCCACGTATTTCGATTTAACCACGACTACGACAAGTATTACCAGTGA CGTTTTCGTACCTCCCTCTGTCTTCATTCAACCGTCATCATCACCAGTCA CGTCTTTTGATTCAACCACGACTACGACAAGTATTACTGACTCATTTATT CAACAAGCATCTACAACGACGGGTCTTGATAGTTATACGGGATACGTTCC TACGACAAATGTTCAACCTACGGCATCATCGAAGAGGACAAGGAATTTAT CCATATGGGAAGGACACGCAATCAGAATCATCTTTAACTTCAATGATGCT GGTCAACCTAATCAATGTCTCTTCATTAAAGTCCCTGGAACACTTGTTTC AAGATAACTCTACTTTATCCTTCCAGAGACACTTCAACATCTTCAATCAC TACACCAAAAGTCCCAACGACCCCACCAAAAACAACTCCTTCACAAAAAC CGTCAGTCGTTACACCAAAGCTCCCAGCGACCCCACCAAAAACAACTCCT TCACAAGAACCACCAATCACCTCGGCACCAAACACTCCAACTCAACCGAT CACAATCATACCAACAACTTCGTTCCGTAATACAACCAGTCCGACAGAAG AACCACCCGTAGTGAATAATGCACCGGTTATCGCAGGAGTCACGACTTCG TTAGCTTTCTTGTTGGTATTTTCGGCAGCTCTCTTCTACGTTCTGAGAAA AAAACCCAGCAGTAATTACAGATATTGACGCATCGAAAGCCAGCGACGTT TTCGTACCTCCCTCCGTCTTCATTCAGCCATCCTCATCATCGGCCACGTA TTTCGATTTAACCACGACTACGACAAGTATTACCAGTGACGTTTTCGTAC CTCCCTCTGTCTTCATTCAACCGTCATCATCACCAGTCACGTCTTTTGAT TCAACCACGACTACGACAAGTATTACTGACTCATTTATTCAACAAGCATC TACAACGACGGGTCTTGATAGTTATACGGGATACGTTCCTACGACAAATG TTCAACCTACGGCATCATCGAAGAGGACAAGGAATTTATCCATATGGGAA GGACACGCAATCAGAATCATCTTTAACTTCAATGATGCTGGTCAACCTAA TCAATGTCTCTTCATTAAAGTCCCTGGAACACTTGTTTCAAGATAACTCT ACTTTATCCTTCCAGAGACACTTCAACATCTTCAATCACTACACCAAAAG TCCCAACGACCCCACCAAAAACAACTCCTTCACAAAAACCGTCAGTCGTT ACACCAAAGCTCCCAGCGACCCCACCAAAAACAACTCCTTCACAAGAACC ACCAATCACCTCGGCACCAAACACTCCAACTCAACCGATCACAATCATAC CAACAACTTCGTTCCGTAATACAACCAGTCCGACAGAAGAACCACCCGTA GTGAATAATGCACCGGTTATCGCAGGAGTCACGACTTCGTTAGCTTTCTT GTTGGTATTTTCGGCAGCTCTCTTCTACGTTCTGAGAAAAAAACCCAGCA GTAATTACAGATATTGACGCATCGAAAGCCAGCGACGTTTTCGTACCTCC CTCCGTCTTCATTCAGCCATCCTCATCATCGGCCACGTATTTCGATTTAA CCACGACTACGACAAGTATTACCAGTGACGTTTTCGTACCTCCCTCTGTC TTCATTCAACCGTCATCATCACCAGTCACGTCTTTTGATTCAACCACGAC TACGACAAGTATTACTGACTCATTTATTCAACAAGCATCTACAACGACGG GTCTTGATAGTTATACGGGATACGTTCCTACGACAAATGTTCAACCTACG GCATCATCGAAGAGGACAAGGAATTTATCCATATGGGAAGGACACGCAAT CAGAATCATCTTTAACTTCAATGATGCTGGTCAACCTAATCAATGTCTCT TCATTAAAGTCCCTGGAACACTTGTTTCAAGATAACTCTACTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00066223-exon-scaffold_451-1575043694:305597..305614 | TCONS_00066223-exon-scaffold_451-1575043694:305597..305614 | Clytia hemisphaerica | exon |
TCONS_00066223-exon-scaffold_451-1575043694:304092..304206 | TCONS_00066223-exon-scaffold_451-1575043694:304092..304206 | Clytia hemisphaerica | exon |
TCONS_00066223-exon-scaffold_451-1575043694:303277..303596 | TCONS_00066223-exon-scaffold_451-1575043694:303277..303596 | Clytia hemisphaerica | exon |
TCONS_00066223-exon-scaffold_451-1575043694:302132..302457 | TCONS_00066223-exon-scaffold_451-1575043694:302132..302457 | Clytia hemisphaerica | exon |
TCONS_00066223-exon-scaffold_451-1575043694:301647..301657 | TCONS_00066223-exon-scaffold_451-1575043694:301647..301657 | Clytia hemisphaerica | exon |
TCONS_00066223-exon-scaffold_451-1510915933:305597..305614 | TCONS_00066223-exon-scaffold_451-1510915933:305597..305614 | Clytia hemisphaerica | exon |
TCONS_00066223-exon-scaffold_451-1510915933:304092..304206 | TCONS_00066223-exon-scaffold_451-1510915933:304092..304206 | Clytia hemisphaerica | exon |
TCONS_00066223-exon-scaffold_451-1510915933:303277..303596 | TCONS_00066223-exon-scaffold_451-1510915933:303277..303596 | Clytia hemisphaerica | exon |
TCONS_00066223-exon-scaffold_451-1510915933:302132..302457 | TCONS_00066223-exon-scaffold_451-1510915933:302132..302457 | Clytia hemisphaerica | exon |
TCONS_00066223-exon-scaffold_451-1510915933:301647..301657 | TCONS_00066223-exon-scaffold_451-1510915933:301647..301657 | Clytia hemisphaerica | exon |
TCONS_00066223-exon-scaffold_451-1491911889:305597..305614 | TCONS_00066223-exon-scaffold_451-1491911889:305597..305614 | Clytia hemisphaerica | exon |
TCONS_00066223-exon-scaffold_451-1491911889:304092..304206 | TCONS_00066223-exon-scaffold_451-1491911889:304092..304206 | Clytia hemisphaerica | exon |
TCONS_00066223-exon-scaffold_451-1491911889:303277..303596 | TCONS_00066223-exon-scaffold_451-1491911889:303277..303596 | Clytia hemisphaerica | exon |
TCONS_00066223-exon-scaffold_451-1491911889:302132..302457 | TCONS_00066223-exon-scaffold_451-1491911889:302132..302457 | Clytia hemisphaerica | exon |
TCONS_00066223-exon-scaffold_451-1491911889:301647..301657 | TCONS_00066223-exon-scaffold_451-1491911889:301647..301657 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_451 | supercontig | scaffold_451:301647..305614 - |
Blast
The following BLAST results are available for this feature:
|