Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066228 ID=TCONS_00066228|Name=TCONS_00066228|organism=Clytia hemisphaerica|type=transcript|length=1248bpRun BLAST on NCBI protein sequence of TCONS_00066228-protein >TCONS_00066228-protein ID=TCONS_00066228-protein|Name=TCONS_00066228-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp MAPIVFAYWKIRGLAQSIRLLLGYTKTDFEDKHYECGEAPTFDRSCWYNVRun BLAST on NCBI transcript from alignment at scaffold_451:352144..363029- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066228 ID=TCONS_00066228|Name=TCONS_00066228|organism=Clytia hemisphaerica|type=transcript|length=10886bp|location=Sequence derived from alignment at scaffold_451:352144..363029- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_451:352144..363029- >TCONS_00066228 ID=TCONS_00066228|Name=TCONS_00066228|organism=Clytia hemisphaerica|type=CDS|length=6630bp|location=Sequence derived from alignment at scaffold_451:352144..363029- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066228 vs. Swiss-Prot (Human)
Match: GSTM3 (Glutathione S-transferase Mu 3 OS=Homo sapiens GN=GSTM3 PE=1 SV=3) HSP 1 Score: 218.009 bits (554), Expect = 1.123e-67 Identity = 106/216 (49.07%), Postives = 152/216 (70.37%), Query Frame = 1 Query: 49 APIVFAYWKIRGLAQSIRLLLGYTKTDFEDKHYECGEAPTFDRSCWYNVKETLGFDFPNLPYLIDGDVKITQSNAIHRYIARKNGMVGETDEERLQIDILENQLMDFRNDFVMMLYFTPPDLYENKRQEYIKRNKIFLGRLSKYLGDKTFFVGKKLTFVDFIIYELLDQHKLFEISMFEDCQNLLDFVSRFENIPEIMEFMSSEKFFKGPINNKDA 696 + +V YW IRGLA +IRLLL +T T +E+K Y CGEAP +DRS W +VK L DFPNLPYL+DG KITQSNAI RYIARK+ M GET+EE++++DI+ENQ+MDFR + + Y + +E + +Y++ L + S +LG ++F G+KLTFVDF+ Y++LDQ+++F+ ++ NL F+ RFE + +I ++ S++F K PINNK A Sbjct: 5 SSMVLGYWDIRGLAHAIRLLLEFTDTSYEEKRYTCGEAPDYDRSQWLDVKFKLDLDFPNLPYLLDGKNKITQSNAILRYIARKHNMCGETEEEKIRVDIIENQVMDFRTQLIRLCYSSD---HEKLKPQYLEELPGQLKQFSMFLGKFSWFAGEKLTFVDFLTYDILDQNRIFDPKCLDEFPNLKAFMCRFEALEKIAAYLQSDQFCKMPINNKMA 217 The following BLAST results are available for this feature:
BLAST of TCONS_00066228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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