TCONS_00066230 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066230
Unique NameTCONS_00066230
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066230 ID=TCONS_00066230|Name=TCONS_00066230|organism=Clytia hemisphaerica|type=transcript|length=1139bp
tgctccgCAAAGGTGGGGAGGGTGAAGCCTCTCCATTCCCGTTTCCGCCG
GGCCTGAAATCTGCAAGTAACCAATAACATAGAATCCCCTTGGAATAGGT
GTTCTGTATTAGGAAGTTTTATTTCCATGAcattcccttctcacagaccc
gatgaAGTCCTCTctcactgaaaaaattggcaaaaatattgtCCTCCGTG
AAAAATCATCCGTTCCATCCCAACTGATTGTTCTCACATTAAAACGATGA
AacttaaatccccagccataaaaaattttggaatatcAATCCTCTTCGAG
TTCATTAATTTTCTACCCcgactggctgaaaaaattagGAAGTTAGAAGG
TGTTGCTTCATGAGCTGACACAACGTTCATTTAATGTCCATACAACATCC
ATAAAAGGCTTTGTTCCAGCTGTATAACTAGCCTTTAAACCTCAACCATA
AAGTATTCAGTAGAATGCCAGACATTTCTCCTTTAGCCTGTATAccacaa
aatacaaaataagtTGTCCAACTGGAGACGCGACTAGTGCACATAATAAC
ACAAGTCCAACAGCGATTAGCGGCTGTTCTAAAAAATCCATTTTCGAATA
AACAACCCTCTTAGTTGCGTAACAATAAACTCCATTACATGCTCCGTACA
AAAGCATCAGTATGGATGGATATATAAAATGCAGCAATCTGATTGGTGTC
CGGCTAATCATGTGATCAACGAGAACCAATAAGAATGCAAGACCGTGACG
ATCACAGCGCAAGTACCATTGTAGAGCGTGCGATGATTGGTTCGAATCAA
ACAATAGGGTCCAGTAAACAAGGACAGTTAAAAATGCTAACGTCAGCACA
CTGGATGAAAGCATCCAATAGATTTTCAAAAACCACGTGACCTCACCAAT
AGTTTCTGATAAGAAAACTTCAGAATTCATTGACGGAAGCCGGTTATCTT
GTAGTCGTGCGTGATGTAAGTCACGTTTGGAGCCTCCGTGATCACGTTTA
GAACCTCTGTGATCACGTTTCGCACCCACACGCCTAACATTCTCTTCTAT
ATCCAATATAATAGAATCAACACTGTATTGACTATAAGCGCTGGTTTGAG
TCATAAGCTGGCTTGTACTACCGTTAACACTTGATGATG
Run BLAST on NCBI

transcript from alignment at scaffold_451:460138..461335-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066230 ID=TCONS_00066230|Name=TCONS_00066230|organism=Clytia hemisphaerica|type=transcript|length=1198bp|location=Sequence derived from alignment at scaffold_451:460138..461335- (Clytia hemisphaerica)
TGCTCCGCAAAGGTGGGGAGGGTGAAGCCTCTCCATTCCCGTTTCCGCCG
GGCCTGAAATCTGCAAGTAACCAATAACATAGAATCCCCTTGGAATAGGT
GTTCNGCCGGGCCTGAAATCTGCAAGTAGCCAATAACATAGAATCCCCTT
GGAATAGGTGTTCTGTATTAGGAAGTTTTATTTCCATGACATTCCCTTCT
CACAGACCCGATGAAGTCCTCTCTCACTGAAAAAATTGGCAAAAATATTG
TCCTCCGTGAAAAATCATCCGTTCCATCCCAACTGATTGTTCTCACATTA
AAACGATGAAACTTAAATCCCCAGCCATAAAAAATTTTGGAATATCAATC
CTCTTCGAGTTCATTAATTTTCTACCCCGACTGGCTGAAAAAATTAGGAA
GTTAGAAGGTGTTGCTTCATGAGCTGACACAACGTTCATTTAATGTCCAT
ACAACATCCATAAAAGGCTTTGTTCCAGCTGTATAACTAGCCTTTAAACC
TCAACCATAAAGTATTCAGTAGAATGCCAGACATTTCTCCTTTAGCCTGT
ATACCACAAAATACAAAATAAGTTGTCCAACTGGAGACGCGACTAGTGCA
CATAATAACACAAGTCCAACAGCGATTAGCGGCTGTTCTAAAAAATCCAT
TTTCGAATAAACAACCCTCTTAGTTGCGTAACAATAAACTCCATTACATG
CTCCGTACAAAAGCATCAGTATGGATGGATATATAAAATGCAGCAATCTG
ATTGGTGTCCGGCTAATCATGTGATCAACGAGAACCAATAAGAATGCAAG
ACCGTGACGATCACAGCGCAAGTACCATTGTAGAGCGTGCGATGATTGGT
TCGAATCAAACAATAGGGTCCAGTAAACAAGGACAGTTAAAAATGCTAAC
GTCAGCACACTGGATGAAAGCATCCAATAGATTTTCAAAAACCACGTGAC
CTCACCAATAGTTTCTGATAAGAAAACTTCAGAATTCATTGACGGAAGCC
GGTTATCTTGTAGTCGTGCGTGATGTAAGTCACGTTTGGAGCCTCCGTGA
TCACGTTTAGAACCTCTGTGATCACGTTTCGCACCCACACGCCTAACATT
CTCTTCTATATCCAATATAATAGAATCAACACTGTATTGACTATAAGCGC
TGGTTTGAGTCATAAGCTGGCTTGTACTACCGTTAACACTTGATGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041448XLOC_041448Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066230-exon-scaffold_451-1575043694:461238..461335TCONS_00066230-exon-scaffold_451-1575043694:461238..461335Clytia hemisphaericaexon
TCONS_00066230-exon-scaffold_451-1575043694:460138..461178TCONS_00066230-exon-scaffold_451-1575043694:460138..461178Clytia hemisphaericaexon
TCONS_00066230-exon-scaffold_451-1510915933:461238..461335TCONS_00066230-exon-scaffold_451-1510915933:461238..461335Clytia hemisphaericaexon
TCONS_00066230-exon-scaffold_451-1510915933:460138..461178TCONS_00066230-exon-scaffold_451-1510915933:460138..461178Clytia hemisphaericaexon
TCONS_00066230-exon-scaffold_451-1491911889:461238..461335TCONS_00066230-exon-scaffold_451-1491911889:461238..461335Clytia hemisphaericaexon
TCONS_00066230-exon-scaffold_451-1491911889:460138..461178TCONS_00066230-exon-scaffold_451-1491911889:460138..461178Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:460138..461335 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00767389	0	0.172773	0	0	0	0.371613	1.09675	0.473409	0.141727	0.700165	0.409975	0.119576	0.0757352	0	0.106666	0	0	0	0	0	0	0	0.119759	1.44129	0.557696	0	0.167476	0.144059	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top