|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066234 ID=TCONS_00066234|Name=TCONS_00066234|organism=Clytia hemisphaerica|type=transcript|length=4184bp
tgaagaagacatAAGGCCTGATGAAATGAGTTCATTTGTACCTTCTTCTT
TGAACACACAAAtgcataaaaacaaaatttctcattttatCAACAATATC
CCTGAACTGGATATTATTGGTATTGAACCAATCAATGAATTCAATACTCC
ATTTTTAGCTACTATGGCTTTTCCAACTCTATTTCCTGATGGCAAAGGTG
ATCCAACTAACCTTGCCTTGGAAAGAACTATAGCGTCTAATGAACTTGAA
AACTTTTCATTAAAGATTCGTCATTTACTCAAATTCTGTGATGTCAATGA
TGACAATTACTTCTATCGTTTTGCTGCACATCCTAGATTTGCCTACTGGG
CTTTCAACATATTGTATCGTAGAAGAATTTTGAGCAGGGGAAATTTGTAC
ATTAAAAGGAATCCAGGGGAAATGAATTTTACTTTGGATGAATTCAATGA
AATGTTAAACTCTAACTGTGCTAATGAATTGAtgaaaaaggtattttatt
aCACCAAAGATGTAAGTGGATCACGTTCTTTTTGGAACAAAGTACGAAAC
AATCTGACAGCAACAGTTAAACAAGTTGGggtatttacaatttttttcac
attttctaTGGCAGAGTTTCACTGGCCAGATCTTTTGAGTAAATTTAAAG
TAGATGTCAATGATGTGAATGGAATAAGAAAATTTATTACAGAGAATCCT
CATGTAGTAGACTATTACTTCACTGAGCGTACAAACAAATTTGTCAAGCA
TTGGCTTTATAATTTGCTAAAAGCTACATGGCACTGGTACAGGTTTGAAT
ATGCTTCTAGAGGTTCCATTCATTGTCATGGTGTTGCTAAACTAGAAGAC
GATCCAGGTTTGGTTGAATTAACAAATATTGCTCTGAAAGGTTACCTTGC
AtcgcaaaaattaaaatctgaGAATGTTGCTTTTCAGGAAAAAGAGTTGA
ATGAAATTATTGCTGAAGGTAGCCAGGCTGAGAAACAAGTGTGTGATTAT
GTTGATAAGCTTCTTTGTACTTGCAATCCTATGGAGGGAGAAAACTGGGT
CAAACCCCAGGTACATCCCTGTAAAGTGGATTATAGAAACTTAAATCCAG
AGGAAATGAGTACAGATTATGCCAATCTTGTTAACTCTGTCGAAAAACAT
CTTTGTAGTTCGGCATATTGTCTTCGGCAAAAAAATGATGACACAACATG
TCGATTTCACTTTCCTTTTGAAGTAAACGAGAAAACACATTTGGAATTTG
AAAAGGTGAAATCTAGAGATGGTGTTGAAAGGTTCAGAGCAAAAGTTGTA
ACTTCAAGAAATGACCCAAGAGTCAACAGGCACCAACGTGTTTTATTACA
AGGATGGAGAGCCAATGTTGATATCAGTGTAGTAGTTGATTACCACTCAT
GTGTTGAATATTTGACAAAGTATGCTTCTAAGCCAGAGAAGCTCAGTGAT
ATTACACAGGATGCGTTCACTCATGTGGCTTCAAAAGTAAACTCTGATAA
TTTTTCCCCAAGCTCTGCAATAAAGAAATTAATGATGAGATCGGTAGGTT
TACGTGATATGAGTGTTCAAGAGGTTTGCCATCAAATATTAGGATTGAAG
TATTACAGTAGTTCTTATGAAGTTTATTGCATGTCCTTAGATGGTTCTCG
ACAGGTTGAATTGGTTGATGGTGAAGTTAGTACAAAAAAATCTCACTTGG
ATATTTATGCATTTAGAGAGGACTACTCTTCTGATCCAAGGATTTCTGAG
ATGAATTTTATCCAATTTCATGCCAATTATGTTTTGGTCAATGAAGAGTT
GcataaaaggaaaaaagaagttGTAATCCGAACATTTCCTTCTTACTCAT
CTTCTCCAAATAGTATTCACTATAGTAAGTACTGCAAGTATAGTTTACTA
AAATATAAAGTATGGAGACATACTCCAAATTCAGCTTGGGGTGAAATAGA
TGCAACTGATGAAGGTTTTATTATGTGTTGGGCTACATTTCTACGATCAG
ATGCTGCTGTTAGTGTTCCTAATCATTTAAGGGAATTAGAAACAATTGAA
AATGCTATGATGAGTAGAGAAACAGGTACCGATTCTCAGGACTCTGATTC
CGAAGATGATTCTGAAGTAATCAATGATGAGATAAGCAACTACAGAGAGG
AATGGATGTTTCTAGCAGATCATTTCTCAAATCCCCAACAAGAAGATAAT
TCGAGTGGTAGTGAAAATAGAACATATTGGCTGGATCAGTGTTCCCAGTA
TAATTCAATATCTAGATTAGAAATGCCTGCTTGGATAAATAGCAAAAAAG
CTACCTTAAGAATAGAAGGTCAACTGAATGACGAGGACACTGAATTACAG
AATGTCTTAAAACTAAATGATCAACAGCGTAAAGCATTTGAGATGGTAAG
GTGTCACATTAATAGTAACTCACAACTGTTGATGATAATTTTTGGAAAGG
CAGGTtgtggaaaaagttttttgattcaCAGACTTAGACATTTATTAGGA
GATGCACTCATCATTTCATCATTATTTGGACTTGCAGCTTATAGTGTAGG
AGGTAAAACTTTACATCACTTGTTGAGATTGCCTATCAAAGGCAAGTTTA
ACTCCGAACTTGAGGGCTCGTCATTGATACAACTTCAAGAAAGGCTAAAA
GGTATTAGGTACATTATAATTGATGAATATTCTGTAATTAATCGAACAGA
CTTAGCTTGGGTGAATCGGAGATGCAAACAAGCCACTGGAAAGTTTGATG
TGCCATTTGGAGGTATAAATATGATCTTGTCTGGAGACTTGGGACAACTT
CCTCCTGTGAAAGGACATCCTATTTATTACAACAATCCTAGAAATGAACT
TGAAGCTGAGGGATTTTTCGTTTATCAATTATTCAATACAGTTATTGAGC
TTACTGTGAATCAGCGCTCAGATGGAAGCAGTTCTCTTCAAAAAAGATTT
CGCAGCCTCTTGAGTAATGTTCGTGATGGTAATGTGAGCATAGATGATTG
GAAATTGTTACTGACACGTTCTGGACCTAGTATTAAAACTAACTTTTCAA
ATGCCTTGAAGTTGTCCTATGGAAATAAAGATGTTGCAGAAAACAATTTC
AAGGCCCTTGAAAAACTGAACCAACCGATAGCTAGAATTTCTGCTTTACA
CAATGACAAAAAAGCTGCAAAATGCTCTTTAGATGATATGGGTGGCTTGG
CACCTACTCTCCTTTTATCAGTTGGAGCTAGAGTAATGTTAATGAGAAAT
TTGTGGACTGAATCTGGTCTCTGTAATGGAGCCATGGGTACTGTTTGCAG
CATTGTTTTTAAGGATAATGAAACTCCACCATCTTTTCCAATAGCAGTGA
TTGTACAATTTGACCAATATTCAGGTCCAAGTTTTTCAGAATTACAACAG
AATTTGGTACCCATACCACCTATTGCAAATACATCTGACAGCCTAGGTAG
TAATTATGAAAGAATTCAGTTTCCCTTGCGATTGGCATGGTCAATAACTA
TACACAAGTCGCAAGGCCTTACTCTAGAACAAATGTCAATTGATCTTGGA
AAATCTGAACGAGCATCTGGACAATCTTATGTTGCTCTCTCAAGAGCAAA
GACTTTAGATAGTATTTATATTGAGCCAATGCCATATGAAAGATTGAAAT
CCTTAGCAAAAAGTAAAAGTTTGAAAAAGCGTTTGGATGAAGAAAGCAGA
TTACGTCAACTTGGTATGACAAAGTAATCAAATTAAAGTTTTTATTTACC
AGCCGTCTCCTCTAAATAGTTTGTATATAGATTTGCAGTTTTTGTGATTC
TTTCATTGTTTTTAAAAAAAGTAAAGGGGAAATGTGGATATTTTCCTGAA
AATTTGTTTATTTATCATTTTAGTTTCTTTTAATAACAAAAATTATCCTG
TATCTTTATTACAGTGGCAAAAGGTGACAGAAAGAGGAAGCAAACTGCTG
CTGATGCTAAGATGGATGACTTTGATGCATTAGCTAGCACTCAAAGTAAT
AACACCACCAAAAGTTCAAGTTCTTCTCCCAACGCCAGTGAAAGTTTGAA
TAACAATGAGACACCGGTGACTCCTAAAAAGCAGGCTGTTGAAGGGATGG
TCAATACACCATCACGTTTGTTTGGGTCTCCATCACTCTTGCCGTCCCCA
AGATTTTCACCTTCCATTCCACCCAATGCCAGAG Run BLAST on NCBI transcript from alignment at scaffold_451:726572..730755- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066234 ID=TCONS_00066234|Name=TCONS_00066234|organism=Clytia hemisphaerica|type=transcript|length=4184bp|location=Sequence derived from alignment at scaffold_451:726572..730755- (Clytia hemisphaerica)
TGAAGAAGACATAAGGCCTGATGAAATGAGTTCATTTGTACCTTCTTCTT
TGAACACACAAATGCATAAAAACAAAATTTCTCATTTTATCAACAATATC
CCTGAACTGGATATTATTGGTATTGAACCAATCAATGAATTCAATACTCC
ATTTTTAGCTACTATGGCTTTTCCAACTCTATTTCCTGATGGCAAAGGTG
ATCCAACTAACCTTGCCTTGGAAAGAACTATAGCGTCTAATGAACTTGAA
AACTTTTCATTAAAGATTCGTCATTTACTCAAATTCTGTGATGTCAATGA
TGACAATTACTTCTATCGTTTTGCTGCACATCCTAGATTTGCCTACTGGG
CTTTCAACATATTGTATCGTAGAAGAATTTTGAGCAGGGGAAATTTGTAC
ATTAAAAGGAATCCAGGGGAAATGAATTTTACTTTGGATGAATTCAATGA
AATGTTAAACTCTAACTGTGCTAATGAATTGATGAAAAAGGTATTTTATT
ACACCAAAGATGTAAGTGGATCACGTTCTTTTTGGAACAAAGTACGAAAC
AATCTGACAGCAACAGTTAAACAAGTTGGGGTATTTACAATTTTTTTCAC
ATTTTCTATGGCAGAGTTTCACTGGCCAGATCTTTTGAGTAAATTTAAAG
TAGATGTCAATGATGTGAATGGAATAAGAAAATTTATTACAGAGAATCCT
CATGTAGTAGACTATTACTTCACTGAGCGTACAAACAAATTTGTCAAGCA
TTGGCTTTATAATTTGCTAAAAGCTACATGGCACTGGTACAGGTTTGAAT
ATGCTTCTAGAGGTTCCATTCATTGTCATGGTGTTGCTAAACTAGAAGAC
GATCCAGGTTTGGTTGAATTAACAAATATTGCTCTGAAAGGTTACCTTGC
ATCGCAAAAATTAAAATCTGAGAATGTTGCTTTTCAGGAAAAAGAGTTGA
ATGAAATTATTGCTGAAGGTAGCCAGGCTGAGAAACAAGTGTGTGATTAT
GTTGATAAGCTTCTTTGTACTTGCAATCCTATGGAGGGAGAAAACTGGGT
CAAACCCCAGGTACATCCCTGTAAAGTGGATTATAGAAACTTAAATCCAG
AGGAAATGAGTACAGATTATGCCAATCTTGTTAACTCTGTCGAAAAACAT
CTTTGTAGTTCGGCATATTGTCTTCGGCAAAAAAATGATGACACAACATG
TCGATTTCACTTTCCTTTTGAAGTAAACGAGAAAACACATTTGGAATTTG
AAAAGGTGAAATCTAGAGATGGTGTTGAAAGGTTCAGAGCAAAAGTTGTA
ACTTCAAGAAATGACCCAAGAGTCAACAGGCACCAACGTGTTTTATTACA
AGGATGGAGAGCCAATGTTGATATCAGTGTAGTAGTTGATTACCACTCAT
GTGTTGAATATTTGACAAAGTATGCTTCTAAGCCAGAGAAGCTCAGTGAT
ATTACACAGGATGCGTTCACTCATGTGGCTTCAAAAGTAAACTCTGATAA
TTTTTCCCCAAGCTCTGCAATAAAGAAATTAATGATGAGATCGGTAGGTT
TACGTGATATGAGTGTTCAAGAGGTTTGCCATCAAATATTAGGATTGAAG
TATTACAGTAGTTCTTATGAAGTTTATTGCATGTCCTTAGATGGTTCTCG
ACAGGTTGAATTGGTTGATGGTGAAGTTAGTACAAAAAAATCTCACTTGG
ATATTTATGCATTTAGAGAGGACTACTCTTCTGATCCAAGGATTTCTGAG
ATGAATTTTATCCAATTTCATGCCAATTATGTTTTGGTCAATGAAGAGTT
GCATAAAAGGAAAAAAGAAGTTGTAATCCGAACATTTCCTTCTTACTCAT
CTTCTCCAAATAGTATTCACTATAGTAAGTACTGCAAGTATAGTTTACTA
AAATATAAAGTATGGAGACATACTCCAAATTCAGCTTGGGGTGAAATAGA
TGCAACTGATGAAGGTTTTATTATGTGTTGGGCTACATTTCTACGATCAG
ATGCTGCTGTTAGTGTTCCTAATCATTTAAGGGAATTAGAAACAATTGAA
AATGCTATGATGAGTAGAGAAACAGGTACCGATTCTCAGGACTCTGATTC
CGAAGATGATTCTGAAGTAATCAATGATGAGATAAGCAACTACAGAGAGG
AATGGATGTTTCTAGCAGATCATTTCTCAAATCCCCAACAAGAAGATAAT
TCGAGTGGTAGTGAAAATAGAACATATTGGCTGGATCAGTGTTCCCAGTA
TAATTCAATATCTAGATTAGAAATGCCTGCTTGGATAAATAGCAAAAAAG
CTACCTTAAGAATAGAAGGTCAACTGAATGACGAGGACACTGAATTACAG
AATGTCTTAAAACTAAATGATCAACAGCGTAAAGCATTTGAGATGGTAAG
GTGTCACATTAATAGTAACTCACAACTGTTGATGATAATTTTTGGAAAGG
CAGGTTGTGGAAAAAGTTTTTTGATTCACAGACTTAGACATTTATTAGGA
GATGCACTCATCATTTCATCATTATTTGGACTTGCAGCTTATAGTGTAGG
AGGTAAAACTTTACATCACTTGTTGAGATTGCCTATCAAAGGCAAGTTTA
ACTCCGAACTTGAGGGCTCGTCATTGATACAACTTCAAGAAAGGCTAAAA
GGTATTAGGTACATTATAATTGATGAATATTCTGTAATTAATCGAACAGA
CTTAGCTTGGGTGAATCGGAGATGCAAACAAGCCACTGGAAAGTTTGATG
TGCCATTTGGAGGTATAAATATGATCTTGTCTGGAGACTTGGGACAACTT
CCTCCTGTGAAAGGACATCCTATTTATTACAACAATCCTAGAAATGAACT
TGAAGCTGAGGGATTTTTCGTTTATCAATTATTCAATACAGTTATTGAGC
TTACTGTGAATCAGCGCTCAGATGGAAGCAGTTCTCTTCAAAAAAGATTT
CGCAGCCTCTTGAGTAATGTTCGTGATGGTAATGTGAGCATAGATGATTG
GAAATTGTTACTGACACGTTCTGGACCTAGTATTAAAACTAACTTTTCAA
ATGCCTTGAAGTTGTCCTATGGAAATAAAGATGTTGCAGAAAACAATTTC
AAGGCCCTTGAAAAACTGAACCAACCGATAGCTAGAATTTCTGCTTTACA
CAATGACAAAAAAGCTGCAAAATGCTCTTTAGATGATATGGGTGGCTTGG
CACCTACTCTCCTTTTATCAGTTGGAGCTAGAGTAATGTTAATGAGAAAT
TTGTGGACTGAATCTGGTCTCTGTAATGGAGCCATGGGTACTGTTTGCAG
CATTGTTTTTAAGGATAATGAAACTCCACCATCTTTTCCAATAGCAGTGA
TTGTACAATTTGACCAATATTCAGGTCCAAGTTTTTCAGAATTACAACAG
AATTTGGTACCCATACCACCTATTGCAAATACATCTGACAGCCTAGGTAG
TAATTATGAAAGAATTCAGTTTCCCTTGCGATTGGCATGGTCAATAACTA
TACACAAGTCGCAAGGCCTTACTCTAGAACAAATGTCAATTGATCTTGGA
AAATCTGAACGAGCATCTGGACAATCTTATGTTGCTCTCTCAAGAGCAAA
GACTTTAGATAGTATTTATATTGAGCCAATGCCATATGAAAGATTGAAAT
CCTTAGCAAAAAGTAAAAGTTTGAAAAAGCGTTTGGATGAAGAAAGCAGA
TTACGTCAACTTGGTATGACAAAGTAATCAAATTAAAGTTTTTATTTACC
AGCCGTCTCCTCTAAATAGTTTGTATATAGATTTGCAGTTTTTGTGATTC
TTTCATTGTTTTTAAAAAAAGTAAAGGGGAAATGTGGATATTTTCCTGAA
AATTTGTTTATTTATCATTTTAGTTTCTTTTAATAACAAAAATTATCCTG
TATCTTTATTACAGTGGCAAAAGGTGACAGAAAGAGGAAGCAAACTGCTG
CTGATGCTAAGATGGATGACTTTGATGCATTAGCTAGCACTCAAAGTAAT
AACACCACCAAAAGTTCAAGTTCTTCTCCCAACGCCAGTGAAAGTTTGAA
TAACAATGAGACACCGGTGACTCCTAAAAAGCAGGCTGTTGAAGGGATGG
TCAATACACCATCACGTTTGTTTGGGTCTCCATCACTCTTGCCGTCCCCA
AGATTTTCACCTTCCATTCCACCCAATGCCAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066234-exon-scaffold_451-1575043694:726572..730755 | TCONS_00066234-exon-scaffold_451-1575043694:726572..730755 | Clytia hemisphaerica | exon |
| TCONS_00066234-exon-scaffold_451-1510915933:726572..730755 | TCONS_00066234-exon-scaffold_451-1510915933:726572..730755 | Clytia hemisphaerica | exon |
| TCONS_00066234-exon-scaffold_451-1491911889:726572..730755 | TCONS_00066234-exon-scaffold_451-1491911889:726572..730755 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:726572..730755 - |
Blast
BLAST of TCONS_00066234 vs. Swiss-Prot (Human)
Match: PIF1 (ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN=PIF1 PE=1 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 3.390e-33 Identity = 127/412 (30.83%), Postives = 201/412 (48.79%), Query Frame = 2
Query: 2444 GKAGCGKSFLIHR-LRHLLGDALIISSLFGLAAYSVGGKTLHHLLRLPIKGKFNSELEGSSLIQLQERLKGIRY-------IIIDEYSVINRTDLAWVNRRCKQATGKFDVPFGGINMILSGDLGQLPPV-KGHPIYYNNPRNELEAEGFFVYQLFNTVIELT-VNQRSDGSSSLQKRFRSLLSNVRDGNVSIDDWKLLLTRSGPSIKTNFSNALKLSYGNKDVAENNFKALEKLNQPIARISALHNDKKAAKCSLDDMGGLAPTLLLSVGARVMLMRNLWTESGLCNGAMGTVCSIVFKDNETPP-SFPIAV--IVQFDQYSGPSFSELQQNLVPIPPIANTSDSLGSNYERIQFPLRLAWSITIHKSQGLTLEQMSIDLGKSERASGQSYVALSRAKTLDSIYI---EPM 3631
G AG GKS+L+ R L L + ++ G+AA +GG TLH G + + + + L +R G+R ++IDE S++ DL +A + + PFGGI +I+ GD QLPPV KG PR +++ + + +ELT V +++D + F SLL VR G S + + L + + + A +L DVA N + L++L + R A+ ++ + A +LD ++ L L +GA+VML++NL GL NGA G V + P F V ++ D+++ + G R Q PL+LAW+++IHKSQG+TL+ + I LG+ ASGQ+YVALSRA++L + + +PM
Sbjct: 228 GSAGTGKSYLLKRILGSLPPTGTVATASTGVAACHIGGTTLHAF-----AGIGSGQAPLAQCVALAQR-PGVRQGWLNCQRLVIDEISMVE-ADLFDKLEAVARAVRQQNKPFGGIQLIICGDFLQLPPVTKGS----QPPRFCFQSKSW--KRCVPVTLELTKVWRQAD------QTFISLLQAVRLGRCSDEVTRQLQATASHKVGRDGIVATRLCTHQDDVALTNERRLQELPGKVHRFEAMDSNPELAS-TLDAQCPVSQLLQLKLGAQVMLVKNLSVSRGLVNGARGVVVGFEAEGRGLPQVRFLCGVTEVIHADRWT-------------------VQATGGQLLSRQQLPLQLAWAMSIHKSQGMTLDCVEISLGRVF-ASGQAYVALSRARSLQGLRVLDFDPM 599
The following BLAST results are available for this feature:
|
