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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066248 ID=TCONS_00066248|Name=TCONS_00066248|organism=Clytia hemisphaerica|type=transcript|length=1450bpRun BLAST on NCBI protein sequence of TCONS_00066248-protein >TCONS_00066248-protein ID=TCONS_00066248-protein|Name=TCONS_00066248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp MKSTLFLFCFGFGLGHLVFTQDKTKESEQCPNGHCSDGEEHEKMKYTKKGRun BLAST on NCBI transcript from alignment at scaffold_451:994425..1013291- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066248 ID=TCONS_00066248|Name=TCONS_00066248|organism=Clytia hemisphaerica|type=transcript|length=18867bp|location=Sequence derived from alignment at scaffold_451:994425..1013291- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_451:994425..1013291- >TCONS_00066248 ID=TCONS_00066248|Name=TCONS_00066248|organism=Clytia hemisphaerica|type=CDS|length=13530bp|location=Sequence derived from alignment at scaffold_451:994425..1013291- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00066248 vs. Swiss-Prot (Human)
Match: PGLT1 (Protein O-glucosyltransferase 1 OS=Homo sapiens GN=POGLUT1 PE=1 SV=1) HSP 1 Score: 417.542 bits (1072), Expect = 4.994e-142 Identity = 193/361 (53.46%), Postives = 256/361 (70.91%), Query Frame = 3
Query: 360 KKGNKWQKYLDLIEKANKNYKECSTDDC--YRLQRRSDFKNWMERGISEELFVKAKERNIGVHYQVIDGKLYRQDHCIFESRCNGNEHFILKIIKHLPNMEFIINTHDWPKVRKWDE-NLPVFSFSKTPDERDILYPAWTFWEGGPAVWPIFPTGLGRWDLMSEALHKTAQKWTWDRKHSIAFFRGSRTSHERDPLILLSRDKPHIADARYTKNQSWRSKKDSLDMDPVEPVTMETHCHYKYLFNFRGVAASFRFKHLFLCKSLVFHVGKDWTEFFYGEMKPWVHFIPLSVDLKNIEELLEFARQNDEIAQQIMNRGHNFIIKHLRMTDIENYWLKTLKRYASLVKWEVKKDPKLKEILPK 1433
+ G+KW+ ++D I ++ +NY+ CS+ +C Y D + GIS ++ + R +G HYQ+ +LYR++ C+F SRC+G EHFIL++I LP+ME +IN D+P+V KW E +PVFSFSKT + DI+YPAWTFWEGGPAVWPI+PTGLGRWDL E L ++A +W W +K+S A+FRGSRTS ERDPLILLSR P + DA YTKNQ+W+S KD+L + V + HC YKYLFNFRGVAASFRFKHLFLC SLVFHVG +W EFFY ++KPWVH+IP+ DL N++ELL+F + ND++AQ+I RG FI HL+M DI YW L Y+ + + V + +I+PK
Sbjct: 27 ESGSKWKVFIDQINRSLENYEPCSSQNCSCYHGVIEEDLTPF-RGGISRKMMAEVVRRKLGTHYQITKNRLYRENDCMFPSRCSGVEHFILEVIGRLPDMEMVINVRDYPQVPKWMEPAIPVFSFSKTSEYHDIMYPAWTFWEGGPAVWPIYPTGLGRWDLFREDLVRSAAQWPWKKKNSTAYFRGSRTSPERDPLILLSRKNPKLVDAEYTKNQAWKSMKDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRFKHLFLCGSLVFHVGDEWLEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDVAQEIAERGSQFIRNHLQMDDITCYWENLLSEYSKFLSYNVTRRKGYDQIIPK 386 The following BLAST results are available for this feature:
BLAST of TCONS_00066248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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